Mechanism of Cu/Pd-Catalyzed Decarboxylative Cross-Couplings: A DFT Investigation
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1 Mechanism of Cu/Pd-Catalyzed Decarboxylative Cross-Couplings: A DFT Investigation Andreas Fromm, a Christoph van Wüllen, b Dagmar Hackenberger a and Lukas J. Gooßen* a a Fachbereich Chemie Organische Chemie Technische Universität Kaiserslautern Erwin-Schrödinger-Straße Geb. 54, Kaiserslautern, Germany Fax: (+49) , goossen@chemie.uni-kl.de b Fachbereich Chemie Theoretische Chemie Technische Universität Kaiserslautern Erwin-Schrödinger-Straße Geb. 52, Kaiserslautern, Germany Fax: (+49) , vanwullen@chemie.uni-kl.de Supporting Information Computational details Experimental studies Energy profile of the anion exchange step without the potassium counter-ion Electronic energies (with and without solvation) and Gibbs energies including solvation at different temperatures and pressures Empirical dispersion corrections and final Gibbs energies including solvation and empirical dispersion corrections Optimized Cartesian coordinates (Å) from B3LYP/6-31+G(d) calculations Literature S2 S3 S4 S5-S6 S7-S8 S9-S128 S129-S130 S1
2 Computational details All calculations were performed with the Gaussian 03 1 or the Gaussian 09 2 program package and the B3LYP density functional. 3 For the geometry optimizations, the atoms C, H, Br, F, K, N, O and P were described by the 6-31+G(d) basis, 4 while for Cu and Pd a scalar-relativistic effective core potential 5 was used to replace 10 (Cu) or 28 (Pd) core electrons, together with the valence basis sets 5 in double zeta quality. Spherical d and f functions were used in all cases (5D, 7F). All geometries of minima and transition states were fully optimized. Transition states were located from a relaxed potential energy surface scan in which the reaction coordinate was kept fixed at different distances, while all other degrees of freedom were optimized. After this linear transit search, transition states were located using the STQN (synchronous transit-guided quasi-newton) method. 6 The nature of all important transition states were verified by following the intrinsic reaction coordinates. 7 Harmonic force constants were calculated for the optimized geometries to characterize the stationary points either as minima or saddle points. Additional single point energy calculation were performed on all structures employing the G(2d,p) basis 8 for the atoms C, H, Br, F, K, N, O and P. For Cu and Pd the d functions of the basis sets were slightly decontracted from [411] to [3111], and a single set of f functions (taken from the def2-tzvp basis sets, 9 f (Cu) = 2.233, f (Pd) = ) was added for both elements. Single point solvent calculations were performed with the same basis set at the optimized gas-phase geometries for all of the intermediates and transition states, using the conductor-like polarizable continuum model 10 (CPCM) of Gaussian 09, which is an implementation of the conductor-like screening solvation model 11 (COSMO). N-Methyl-2-pyrrolidone (NMP) was chosen as the solvent (EPS = 32.55). To calculate the zero-point vibrational energies, the harmonic frequencies calculated (with the small basis) were scaled with a factor of as suggested by Wong. 12 The thermal corrections to the Gibbs energy can be calculated from the partition function, which practically cannot be calculated exactly for polyatomic molecules. The approximation used in the Gaussian program uses the ideal gas, harmonic oscillator and rigid rotator approximation for the translational, vibrational and rotational part of the partition function. Since the ideal gas approximation is used for the reaction mixture, the total Gibbs energy is the sum of the Gibbs energies of all components, which behave as a gas confined to the volume of the reaction mixture, and the translational partition function of each component depends on its concentration in the solution. Note that in the Gaussian program one has to specify the concentration as a pressure, using the ideal gas law p i = RTn i / V where p i is the pressure, R the gas constant, T the absolute temperature, n i the molar quantity and V the reaction volume. Typical experiments, as modeled in our calculations, involve approximately 1 mmol starting material and product in a reaction volume of 2 ml, which corresponds to a pressure of Pa (18.2 atm) at a reaction temperature of 443 K. The amount of catalyst is lower by a factor of 20, so that we used a pressure of Pa (1 atm) for all species involving Cu and/or Pd. The reaction product CO 2, which has a low solubility in NMP at the elevated temperatures and largely leaves the reaction mixture, was considered as follows. The experimental solubility data of CO 2 in NMP 13 show that under the experimental conditions, the molar fraction of CO 2 / NMP is clearly less than 0.01, most likely about when extrapolating temperature and pressure, which also amounts to a CO 2 concentration in NMP that corresponds to a partial pressure of Pa (1 atm) for an ideal gas. Because of the ideal gas approximation, the Gibbs energy for a given temperature T and pressure p was computed from the results for p 0 = 1 atm as G(T,p) = G(T,p 0 ) + RT ln(p / p 0 ). Additionally, empirical dispersion corrections that are not included in density functionals were calculated with Grimme s D3 parameters. 14 All ball and stick models were rendered with GaussView S2
3 Experimental studies Genaral methods Reactions were performed in oven-dried glassware under a nitrogen atmosphere containing a Teflon-coated stirrer bar and dry septum. For the exclusion of atmospheric oxygen from the reaction media, three freeze-pump-thaw cycles were preformed before the reagents were mixed. Solvents were purified by standard procedures prior to use. Potassium carboxylates 7, the triflate and ligand L1 L4 17 were synthesized according to the literature procedures. All reactions were monitored by GC using n-tetradecane as an internal standard. Response factors of the products with regard to n- tetradecane were obtained experimentally by analyzing known quantities of the substances. GC analyses were carried out using an HP-5 capillary column (Phenyl Methyl Siloxane 30 m , 100/ /3) and a time program beginning with 2 min at 60 C followed by 30 C/min ramp to 300 C and then 3 min at this temperature. General procedure for the decarboxylation study (Scheme 7) An oven-dried vessel was charged with the carboxylic acid 22a or b (1.00 mmol), copper(i) oxide (10.7 mg, mmol), 1,10-phenanthroline (27.0 mg, 0.15 mmol), and the appropriate amount of potassium bromide (10) (0 or 1.00 mmol, see Scheme 8). After the vessel was flushed with alternating vacuum and nitrogen purge cycles, degassed NMP (1.5 ml), degassed quinoline (0.5 ml) and n-tetradecane (50 µl) were added via syringe. The resulting mixture was stirred at 170 C for 6 h. Then the reaction mixture was allowed to cool to room temperature and was diluted with ethyl acetate (2 ml). A sample of the reaction mixture (0.25 ml) was dissolved in ethyl acetate (2 ml), washed with a saturated solution of bicarbonate (2 ml), dried over MgSO 4, and analyzed by GC. General procedure for the decarboxylation study (Table 1) An oven-dried vessel was charged with the carboxylic acid 22a d (0.50 mmol), copper(i) oxide (3.61 mg, mmol), 1,10-phenanthroline (9.10 mg, 0.05 mmol). After the vessel was flushed with alternating vacuum and nitrogen purge cycles, degassed NMP (2 ml) was added via syringe. The resulting mixture was stirred at 100 C for the given time. Then the reaction mixture was allowed to cool to room temperature, n-tetradecane (50 µl) was added via syringe and the mixture was diluted with ethyl acetate (4 ml). A sample of the reaction mixture (0.25 ml) was dissolved in ethyl acetate (2 ml), washed with a saturated solution of bicarbonate (2 ml), dried over MgSO 4, and analyzed by GC. General procedure for the decarboxylative cross-couplings (Table 2; entries 1, 2, 4 7) Inside the glovebox an oven-dried vessel was charged with the potassium carboxylate 7c or d (0.5 mmol), copper(i) oxide (3.61 mg, mmol), 1,10-phenanthroline (9.10 mg, 0.05 mmol), palladium(ii) iodide (3.61 mg, 0.01 mmol) and the appropriate ligand (0.03 mmol). NMP (2.00 ml) and the triflate 31 (1.0 mmol) were added to this vial and the resulting mixture was stirred at 100 C for 24 h outside the glovebox under a dry atmosphere of nitrogen. Then the reaction mixture was allowed to cool to room temperature, n-tetradecane (50 µl) was added via syringe and the mixture was diluted with ethyl acetate (4 ml). A sample of the reaction mixture (0.25 ml) was dissolved in ethyl acetate (2 ml) and washed with with aqueous HCl (1 M, 2 ml). The organic phase was filtered through a plug of NaHCO 3 / MgSO 4 and analyzed by GC. General procedure for the decarboxylative cross-coupling (Table 2; entry 8) Inside the glovebox an oven-dried vessel was charged with the potassium carboxylate 7c (0.75 mmol), copper(i) oxide (3.61 mg, mmol), 1,10-phenanthroline (9.10 mg, 0.05 mmol), palladium(ii) acetylacetonate (4.57 mg, mmol) and L (12.3 mg, 0.03 mmol). NMP (4.00 ml) and the triflate 31 (0.5 mmol) were added to this vial and the resulting mixture was stirred at 100 C for 24 h outside the glovebox under a dry atmosphere of nitrogen. Then the reaction mixture was allowed to cool to room temperature, n-tetradecane (50 µl) was added via syringe and the mixture was diluted with ethyl acetate (4 ml). A sample of the reaction mixture (0.25 ml) was dissolved in ethyl acetate (2 ml) and washed with with aqueous HCl (1 M, 2 ml). The organic phase was filtered through a plug of NaHCO 3 / MgSO 4 and analyzed by GC. S3
4 Energy profile of the anion exchange step without the potassium counter-ion Relative Energy (kcal mol 1 ) [29 15] [15 33] DEtot (2-F) DEtot (4-F) DGsov (2-F) DGDGsov (4-F) Figure S1. B3LYP/6-31+G(d) Optimized structures for the anion exchange of the 2-fluorobenzoate anion and phenanthroline copper(i) bromide, hydrogens are omitted for clarity. Energy and solution Gibbs energy profiles overlaid for 2- and 4-fluorobenzoate. Color code: C: black, Br: brown, Cu: orange, F: turquoise, N: blue, O: red. S4
5 Electronic energies (with and without solvation) and Gibbs energies including solvation at different temperatures and pressures Table S1. Electronic energies (E tot ), electronic energies including solvation (E sov ) and Gibbs energies including solvation (G sov ) at different temperatures and pressures. All energies are given in hartree. Structure E tot E sov G sov (298 K, 1 atm) G sov (443 K, 1 atm) G sov (443 K, 18.2 atm) Number of imaginary frequencies 1a b a b a b a b a b a b a b a b a b a b a b a b a b a b a b a b [1a 2a] S5
6 [1b 2b] [12 24] [14a 28a] [14b 28b] [15a 16a] [15a 33a] [15b 16b] [15b 33b] [16b 25b] [19a 20a] [19b 20b] [20a 21a] [20b 21b] [24 13] [25a 26a] [25b 26b] [26a 14a] [26b 27] [27 14b] [28a 12a] [28b 12b] [29a 15a] [29b 15b] S6
7 Empirical dispersion corrections and final Gibbs energies including solvation and empirical dispersion corrections Table S2. Empirical dispersion corrections (E disp ) and final Gibbs energies including solvation at the temperature of 443 K at the given pressure and including empirical dispersion corrections (G sov ). All energies are given in hartree. Structure E disp G sov Pressure / atm Number of imaginary frequencies 1a b a b a b a b a b a b a b a b a b a b a b a b a b a b a b a b [1a 2a] [1b 2b] S7
8 [12 24] [14a 28a] [14b 28b] [15a 16a] [15a 33a] [15b 16b] [15b 33b] [16b 25b] [19a 20a] [19b 20b] [20a 21a] [20b 21b] [24 13] [25a 26a] [25b 26b] [26a 14a] [26b 27] [27 14b] [28a 12a] [28b 12b] [29a 15a] [29b 15b] S8
9 Optimized Cartesian coordinates (Å) from B3LYP/6-31+G(d) calculations Structure 1a S9
10 N C C C C C C C C C C C C N Cu O C O C C C C C C F H H H H H H H H H H H H S10
11 Structure 1b S11
12 N C C C C C C C C C C C C N Cu O C O C C C C C C F H H H H H H H H H H H H S12
13 Structure 2a S13
14 C C C C C C Cu N C C C C C C C C C C C C N F H H H H H H H H H H H H S14
15 Structure 2b S15
16 N C C C C C C C C C C C C N Cu C C C C C C F H H H H H H H H H H H H Structure 3 C O O S16
17 Structure 7a S17
18 C C O O K C C C C C H H H H F S18
19 Structure 7b S19
20 C C O O K C C C C C H H F H H S20
21 Structure 8 S21
22 Br C C C C C C H H H H H S22
23 Structure 9a S23
24 C C C C C C C F H H H H C C C C C H H H H H S24
25 Structure 9b S25
26 C C C C C C C H H F H H C C C C C H H H H H Structure 10 K Br S26
27 Structure 11 S27
28 C C N N C C C C H H C C H H C C H H C C H H Cu Br S28
29 Structure 12 C P C Pd Br C H H H H H H H H H S29
30 Structure 13 C P C Pd Br Br C C H H H H H H H H H C C C C C H H H H H S30
31 Structure 14a S31
32 C C C C C C Pd C P C Br C C H H H H H H H H H H H H H H C C C C C H H H H F S32
33 Structure 14b S33
34 C C C C C C Pd C P C Br C C H H H H H H H H H H H H H H C C C C C H H F H H S34
35 Structure 15a S35
36 N C C C C C C C C C C C C N Cu O C O C C C C C C F H H H H H H H H H H H H Br S36
37 Structure 15b S37
38 N C C C C C C C C C C C C N Cu O C O C C C C C C H H F H H H H H H H H H H Br S38
39 Structure 16a S39
40 N C C C C C C C C C C C C N Cu Br C H H H H H H H H C C C C C F H H H H S40
41 Structure 16b S41
42 N C C C C C C C C C C C C N Cu Br C H H H H H H H H C C C C C H H F H H S42
43 Structure 17a S43
44 C C C C C C C O F O H H H H S44
45 Structure 17b S45
46 C C O O C C C C C H H F H H S46
47 Structure 19a S47
48 C C C C C C C O H O K C N C C C C C C C C C C C N Cu Br F H H H H H H H H H H H S48
49 Structure 19b S49
50 N C C C C C C C C C C C C N Cu Br O C O C C C C C C F K H H H H H H H H H H H H S50
51 Structure 20a S51
52 N C C C C C C C C C C C C N Cu Br O C O C C C C C C F K H H H H H H H H H H H H S52
53 Structure 20b S53
54 C C C C C C C O F O Cu Br N C C C C C C C C C C C C N K H H H H H H H H H H H H S54
55 Structure 21a S55
56 C C C C C C C O F O Cu Br N C C C C C C C C C C C C N K H H H H H H H H H H H H S56
57 Structure 21b S57
58 C C C C C C C O F O Cu N C C C C C C C C C C C C N K Br H H H H H H H H H H H H S58
59 Structure 24 S59
60 C C C C C C Pd Br Br P C C C H H H H H H H H H H H H H H S60
61 Structure 25a Pd P Br C H H H C H H H C H S61
62 H H C Br Cu C C C C C C F H H H H N C C C C C H H H H H C C N C C C C C C C C C C H H H H H H H H S62
63 Structure 25b Pd P Br C H H H C H H H C H H H S63
64 C Br Cu C C C C C C H H F H H N C C C C C H H H H H C C N C C C C C C C C C C H H H H H H H H S64
65 Structure 26a C N C C C C C C C C C C C N Cu C C C C C C F Pd C S65
66 C C C C C P C Br C C Br H H H H H H H H H H H H H H H H H H H H H H H H H H S66
67 Structure 26b C N C C C C C C C C C C C S67
68 N Cu C C C C C C F Pd C C C C C C P C Br C C Br H H H H H H H H H H H H H H H H H H H H H H H H H H S68
69 Structure 27 S69
70 C C C N C C C C C C N C C C Cu Br Pd P C C C C C C C Br C C C C C C F C C H H H H H H H H H H H H H H H H H H H H H H S70
71 H H H H Structure 28a S71
72 C C C C C C C C C C C C F Pd P C Br C C H H H H H H H H H H H H H H H H H H S72
73 Structure 28b S73
74 C C C C C C C C C C C C Pd P C F Br C C H H H H H H H H H H H H H H H H H H S74
75 Structure 29a S75
76 C C C C C C C O F O C C C C N C C C C C C C C N Cu Br H H H H H H H H H H H H S76
77 Structure 29b S77
78 C C C C C C C O F O C C C C N C C C C C C C C N Cu Br H H H H H H H H H H H H S78
79 Structure 33a S79
80 N C C C C C C C C C C C C N Cu O C O C C C C C C F Br H H H H H H H H H H H H S80
81 Structure 33b S81
82 N C C C C C C C C C C C C N Cu O C O C C C C C C F Br H H H H H H H H H H H H S82
83 Structure [1a 2a] S83
84 C C C C C C C C C N C C C N Cu C C C C C C F C O O H H H H H H H H H H H H S84
85 Structure [1b 2b] S85
86 C C C C C C C C C N C C C N Cu C O C C C C C C F O H H H H H H H H H H H H S86
87 Structure [12 24] S87
88 C C C C C C Pd P C Br Br C C H H H H H H H H H H H H H H S88
89 Structure [14a 28a] C C C C C C Pd Br F C C C C C C P C C C H H H H H H H H H H H H H H H H H H S89
90 Structure [14b 28b] S90
91 C C C C C C Pd Br H C C C C C C P C C C H H H H H H H H H H H H H H H H F H S91
92 Structure [15a 16a] S92
93 C C C C C C C C C N C C C N Cu C C C C C C F C O O H H H H H H H H H H H H Br S93
94 Structure [15a 33a] S94
95 N C C C C C C C C C C C C N Cu O C O C C C C C C F Br H H H H H H H H H H H H S95
96 Structure [15b 16b] S96
97 C C C C C C C C C N C C C N Cu C O C C C C C C F O H H H H H H H H H H H H Br S97
98 Structure [15b 33b] S98
99 N C C C C C C C C C C C C N Cu O C O C C C C C C F Br H H H H H H H H H H H H S99
100 Structure [16b 25b] C C C C C C Pd S100
101 Br P C C C Br H H H H H H H H H H H H H H Br Cu C C C C C C F N C C C C C C C C C C C C N H H H H H H H H H H H H S101
102 Structure [19a 20a] S102
103 C C C C C C C O F O Cu Br N C C C C C C C C C C C C N K H H H H H H H H H H H H S103
104 Structure [19b 20b] S104
105 C C C C C C C O F O K Cu Br N C C C C C C C C C C C C N H H H H H H H H H H H H S105
106 Structure [20a 21a] S106
107 N C C C C C C C C C C C C N Cu O C O C C C C C C F K Br H H H H H H H H H H H H S107
108 Structure [20b 21b] S108
109 N C C C C C C C C C C C C N Cu O C O C C C C C C H K Br H F H H H H H H H H H H S109
110 Structure [24 13] C C C C C C Pd Br P C C C Br H H H H H H H H H H H H H H S110
111 Structure [25a 26a] C N C C C C C C C C C C C N Cu C C C C C C F Pd C C S111
112 C C C C P C Br C C Br H H H H H H H H H H H H H H H H H H H H H H H H H H S112
113 Structure [25b 26b] C N C C C C C C C C C C C N Cu C C C C C C H Pd C S113
114 C C C C C P C Br C C Br H H H H H H H H H H F H H H H H H H H H H H H H H H S114
115 Structure [26a 14a] C C C C C C S115
116 Pd Br C C C C C C Cu Br F N C C C C C C C C C N C C C P C C C H H H H H H H H H H H H H H H H H H H H H H H H H H S116
117 Structure [26b 27] C C C C C C Pd Br C C C C C S117
118 C Cu Br F N C C C C C C C C C N C C C P C C C H H H H H H H H H H H H H H H H H H H H H H H H H H S118
119 Structure [27 14b] C C C C C C Cu Pd S119
120 Br F N C C C C C C C C C C C C N Br P C C C C C C C C C H H H H H H H H H H H H H H H H H H H H H H H H H H S120
121 Structure [28a 12] S121
122 C C C C C C C C C C C C Pd Br F P C C C H H H H H H H H H H H H H H H H H H S122
123 Structure [28b 12] S123
124 C C C C C C C C C C C C Pd Br F P C C C H H H H H H H H H H H H H H H H H H S124
125 Structure [29a 15a] S125
126 C C C C C C C O F O Cu Br N C C C C C C C C C C C C N H H H H H H H H H H H H S126
127 Structure [29b 15b] S127
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