Ammonia oxidation by Nitrosomonas eutropha with NO 2 as oxidant is not inhibited by acetylene

Size: px
Start display at page:

Download "Ammonia oxidation by Nitrosomonas eutropha with NO 2 as oxidant is not inhibited by acetylene"

Transcription

1 Microbiology (2001), 147, Printed in Great Britain Ammonia oxidation by Nitrosomonas eutropha with NO 2 as oxidant is not inhibited by acetylene Ingo Schmidt, 1 Eberhard Bock 2 and Mike S. M. Jetten 1 Author for correspondence: Ingo Schmidt. Tel: Fax: i.schmidtsci.kun.nl 1 Department of Microbiology, University of Nijmegen, Toernooidveld 1, 6525 ED Nijmegen, The Netherlands 2 Institute for General Botany, Department of Microbiology, University of Hamburg, Ohnhorststraße 18, Hamburg, Germany The effect of acetylene ( 14 C 2 H 2 ) on aerobic and anaerobic ammonia oxidation by Nitrosomonas eutropha was investigated. Ammonia monooxygenase (AMO) was inhibited and a 27 kda polypeptide (AmoA) was labelled during aerobic ammonia oxidation. In contrast, anaerobic, NO 2 -dependent ammonia oxidation (NO 2 /N 2 O 4 as oxidant) was not affected by acetylene. Further studies gave evidence that the inhibition as well as the labelling reaction were O 2 - dependent. Cells pretreated with acetylene under oxic conditions were unable to oxidize ammonia with O 2 as oxidant. After these cell suspensions were supplemented with gaseous NO 2, ammonia oxidation activity of about 140 µmol NH M 4 (g protein)n1 h N1 was detectable under both oxic and anoxic conditions. A significantly reduced acetylene inhibition of the ammonia oxidation activity was observed for cells incubated in the presence of NO. This suggests that NO and acetylene compete for the same binding site on AMO. On the basis of these results a new hypothetical model of ammonia oxidation by N. eutropha was developed. Keywords: acetylene, nitrogen dioxide, C -labelling, NO - and O -dependent ammonia oxidation INTRODUCTION Nitrosomonas eutropha is a chemolithotrophic microorganism that obtains its energy for growth from aerobic or anaerobic ammonia oxidation. The main products are nitrite under oxic conditions and N, NO and nitrite under anoxic conditions (Rees & Nason, 1966; Schmidt & Bock, 1997). Aerobic (equation 1) and anaerobic ammonia oxidation (equation 2) are thought to be initiated by ammonia monooxygenase (AMO) which oxidizes ammonia to hydroxylamine. O and NO are assumed to be the oxidizing agents (Anderson & Hooper, 1983; Dua et al., 1979; Hyman & Wood, 1985; Hyman & Arp, 1993; Rees & Nason, 1966; Schmidt & Bock, 1997, 1998). At 25 C, about 70% of NO is in the dimeric form N O. There is evidence that N O instead of NO is used as oxidizing agent (Schmidt & Bock, 1998). NO 2H+2e NH OHH O (1) NN O 2H+2e NH OH2NOH O (2) Abbreviation: AMO, ammonia monooxygenase. The hydroxylamine resulting from ammonia oxidation is further oxidized to nitrite (equation 3) by hydroxylamine oxidoreductase (HAO) (Arciero & Hooper, 1993; Bergmann et al., 1994; Sayavedra-Soto et al., 1994). NH OHH O HNO 4H+4e (3) The four electrons derived from this reaction enter the AMO reaction (equations 1, 2), CO assimilation and the respiratory chain (Wood, 1986). The reducing equivalents are transferred to the terminal electron acceptors O (oxic conditions) or nitrite (anoxic conditions) (Wood, 1986; Schmidt & Bock, 1998). The reduction of nitrite under anoxic conditions leads to the formation of N, resulting in an N-loss of about 45%. Since AMO has not been characterized beyond cell-free studies (Schmidt & Bock, 1998; Suzuki & Kwok, 1970; Suzuki et al., 1981), much of what is known about the catalytic enzyme activity has been deduced from inhibitor studies using whole cells. Acetylene (C H ) even at low concentrations is a specific potent inhibitor of ammonia oxidation in Nitrosomonas (Anderson & Hooper, 1983; Dua et al., 1979; Hyman & Wood, 1985; Hyman et al., 1994; Hynes & Knowles, 1978). Acetylene SGM 2247

2 I. SCHMIDT, E. BOCK and M. S. M. JETTEN has no effect on hydroxylamine oxidation activity at concentrations sufficient to completely inactivate ammonia oxidation (Hynes & Knowles, 1978). Acetylene is known to inhibit several metalloenzymes (e.g. nitrogenase, methane monooxygenase). Hyman & Wood (1985) presented kinetic evidence that acetylene is a suicidal substrate for AMO. It was proposed that acetylene inactivates catalytically active AMO as a result of the attempted oxidation of the triple bond of acetylene. A reactive intermediate is generated that covalently binds to the active site of the AMO. The use of C H leads to a covalent modification of a 27 kda membrane-bound polypeptide (Hyman & Arp, 1992). After inactivation of AMO with acetylene, recovery of ammonia oxidation activity is dependent on de novo synthesis of a 27 kda polypeptide and additional polypeptides which only occurs in the presence of ammonia (Hyman & Arp, 1995). The main aim of this study was to provide evidence for the new hypothetical model of aerobic and anaerobic ammonia oxidation as described in this article. Clearly, the nitrogen oxides NO and NO are involved in the metabolism of ammonia oxidizers. The present study of the effect of acetylene on aerobic and anaerobic ammonia oxidation by N. eutropha provides data that N O is the obligatory substrate (oxidant) under both oxic and anoxic conditions. METHODS Organism. Cells of N. eutropha strain N904 (isolated from cattle manure) were grown and harvested as described previously (Schmidt & Bock, 1997). The strain is kept in the culture collection of the Institut fu r Allgemeine Botanik (University of Hamburg, Germany). Chemicals. Unlabelled acetylene gas was obtained from Messer Griesheim (Germany). C-labelled acetylene was prepared according to Hyman & Arp (1990), trapping C with DMSO. An aliquot of this solution was added to the cell suspensions. Control experiments were performed using acetylene-free DMSO. Medium and growth conditions. Precultures were grown aerobically in 1 l Erlenmeyer flasks containing 600 ml mineral medium (Schmidt & Bock, 1997). The cultures were grown for 2 3 weeks in the dark at 28 C without stirring or shaking. The purity of the cultures was checked by inoculation of organic liquid and agar-based media, containing (per litre distilled water): 1 g yeast extract, 1 g peptone, 2 g Casamino acids and 2 g beef extract. Furthermore, the cultures were examined by phase-contrast microscopy. With the absence of cell growth after 3 weeks incubation at 28 C under oxic and anoxic conditions and uniform cell composition the cultures were judged to be pure. Experimental design. All experiments were carried out as described previously using Clark-type Oxygen Electrode Units (DW1; Bachofer) as reaction vessels (vol. 10 ml) (Schmidt & Bock, 1997). The electrode unit was equipped with a gas flowthrough system, which was constantly flushed with different gas mixtures (100 ml min ). To study aerobic ammonia oxidation, N gas was supplied with 21% O, p.p.m. (vv) NO and p.p.m. (vv) acetylene. Anaerobic ammonia oxidation was examined in an N or He atmosphere supplied with p.p.m. (vv) NO and p.p.m. (vv) acetylene. The N gas contained a maximum of 100 p.p.b. oxygen (gas certificate by Messer Griesheim). During the experiments the cell suspension (5 ml, 510 cells ml ) was stirred (800 r.p.m.) to ensure efficient gas transfer with the atmosphere. NO consumption and NO production could be calculated on the basis of the different concentrations in the gas inlet and gas outlet. NO and NO were detected with a Chemiluminescence Analyser (Eco Physics). Control experiments were carried out with cell-free medium and heat-sterilized cell suspensions. In further control experiments, chloramphenicol (400 µg ml ) was added to prevent de novo synthesis of proteins. Hydroxylamine oxidation activities of N. eutropha cells were examined under the conditions described above, but ammonia was replaced by hydroxylamine as substrate (2 mm). Electrophoresis. SDS-PAGE was carried out with a Mini- Protean II Cell vertical gel electrophoresis chamber (Bio-Rad). Prior to loading, the samples (200 µg protein) were mixed with an equal volume of a mercaptoethanol solution (1%) with 2% SDS, 20% sucrose and 12% Tris at room temperature. The SDS-PAGE gel consisted of a 12% acrylamide resolving gel and a 4% stacking gel (every lane was loaded with 100 µg protein). The gels were stained with Coomassie brilliant blue. C H -labelled proteins were detected directly after electrophoresis by scintillation autography (fluorography) using X- ray films. The gels were dehydrated in DMSO, drenched in a solution of 2,5-diphenyloxazole (PPO) in DMSO, dried and exposed to X-ray film for 5 6 d (Bonner & Laskey, 1974). The molecular masses of the polypeptides were estimated by comparison with the R F values of molecular mass markers between 144 and 974 kda included in each gel. Analytical procedures. Measurement of NH+,N OH, NO, NO and NO was carried out as described previously (Schmidt & Bock, 1997). The protein concentration was determined according to Bradford (1976). RESULTS Effect of acetylene on aerobic and anaerobic ammonia oxidation by N. eutropha The initial experiments aimed at determining the inhibitory effect of acetylene on both aerobic and anaerobic ammonia oxidation by N. eutropha, i.e. the time-dependent change of ammonia oxidation activity in the presence of C, were monitored. During the experiment, the ammonia concentration was determined and the labelling of the 27 kda polypeptide (AmoA) with C was analysed. Cell suspensions (510 cells ml ) were incubated in gas-tight incubation chambers in three different atmospheres. First, an oxic atmosphere (air); second, an oxic atmosphere (air) supplied with 50 p.p.m. NO ; and third, an anoxic atmosphere (He) supplied with 50 p.p.m. NO. An aliquot of C DMSO solution was added to each cell suspension after 8 min (Fig. 1). The ammonia oxidation activities without added acetylene (0 8 min) were in the same order of magnitude as reported previously (Schmidt & Bock, 1997; Zart et al., 2000). 2248

3 Nitrosomonas eutropha ammonia oxidation 1800 Activity [Ìmol (g protein) 1 h 1 ] Time (min) Fig. 1. Ammonia oxidation activity of N. eutropha cells incubated with 14 C 2 H 2. An aliquot of the 14 C 2 H 2 /DMSO solution was added to each cell suspension after 8 min. The cell suspensions were incubated under different atmospheres: anoxic atmosphere with 50 p.p.m. NO 2 (); oxic atmosphere (21% O 2 ) with 50 p.p.m. NO 2 (); oxic atmosphere (21% O 2 ) without NO 2 (). Fig. 2. Time course of 14 C labelling of polypeptides during incubation of N. eutropha cells with 14 C 2 H 2. The position of the 30 kda molecular mass marker is shown on the left side of the fluorogram. Cells were incubated in an oxic atmosphere without NO 2 for 0, 6 and 12 min, respectively (lanes 1 3), in an oxic atmosphere with 50 p.p.m. NO 2 for 0, 6 and 12 min, respectively (lanes 4 6) or in an anoxic atmosphere with 50 p.p.m. NO 2 for 0 and 12 min, respectively (lanes 7 8). Under oxic conditions, activity was about 1425 µmol NH+ (g protein) h, under oxic conditions with 50 p.p.m. NO activity was 1655 µmol NH+ (g protein) h and under anoxic conditions with 50 p.p.m. NO it was 145 µmol NH+ (g protein) h. After 8 min acetylene was added. The ammonia oxidation activity of cell suspensions incubated under anoxic conditions in an He atmosphere with 50 p.p.m. NO was not influenced by acetylene (Fig. 1). The cells were not affected by the inhibitory effect of acetylene and their activity remained unchanged [145 µmol NH+ (g protein) h ]. When instead of NO small amounts of oxygen were added to the system (1% in the atmosphere), cells became completely inactive within 20 min. Under oxic conditions (air) without NO, ammonia oxidation activity disappeared completely within 12 min in a time-dependent process. After adding 50 p.p.m. NO, ammonia oxidation started again with an activity of about 127 µmol NH+ (g protein) h (not shown). When the experiment was started in an air atmosphere supplied with 50 p.p.m. NO, the addition of acetylene led to a significant decrease in ammonia oxidation activity from 1655 to about 130 µmol NH+ (g protein) h (Fig. 1). The remaining activity was nearly the same as under anoxic conditions [130 to 145 µmol NH+ (g protein) h ]. Obviously, acetylene did not affect ammonia oxidation with NO as oxidant. There was no effect of acetylene on the hydroxylamine oxidation activity under both oxic and anoxic conditions [about µmol N OH (g protein) h ]. Cell samples removed at the indicated times were analysed for labelling with C using SDS-PAGE and fluorography. The fluorogram (Fig. 2) shows that a polypeptide with a molecular mass of about 27 kda was labelled under oxic conditions. The presence of NO did not influence the labelling reaction. The level of label incorporation into the polypeptide increased in a timedependent process and corresponded to the decreasing ammonia oxidation activity. When cells were incubated under anoxic conditions, the 27 kda polypeptide was not labelled. After the addition of 1% oxygen to the atmosphere, labelling started immediately (data not shown). Influence of nitrogen oxides on ammonia oxidation of acetylene-treated N. eutropha cells Previous work showed that the supplementation of both NO and NO led to increasing nitrification activities of N. eutropha under oxic conditions (Zart et al., 2000). Since ammonia oxidation with NO as oxidizing agent was not influenced by acetylene, the influence of NO on acetylene-treated cells was investigated. The cells (510 cells ml ) were initially pretreated in an oxic atmosphere supplied with 500 p.p.m. acetylene (without NO x ) to inhibit aerobic O -dependent ammonia oxidation completely (15 min). The ammonia oxidation activity of these cells was determined under different conditions with regard to O, NO and NO concentrations. The mean values of eight experiments are given in Table 1. The results obtained with acetylene-treated cells show a strong correlation between ammonia oxidation and the presence of NO. As expected from previous experiments, N. eutropha cells were not able to oxidize ammonia under anoxic conditions (expt 1) in the absence of the oxidizing agent NO. Experiment 2, with cells incubated under oxic conditions without NO, 2249

4 I. SCHMIDT, E. BOCK and M. S. M. JETTEN Table 1. Comparison of the rates of various AMO-dependent activities after treatment of cells with acetylene The steady-state rates of ammonia, NO, NO and O consumption are expressed in µmol (g protein) h. Nitrogen oxides were added at a concentration of 50 p.p.m. Cells were pretreated with acetylene in an oxic atmosphere for 15 min., Substrate was not added to the gas atmosphere. Gas atmosphere NH+ 4 NO NO 2 O 2 1. Anoxic (He) 0 2. Oxic (air) AnoxicNO 1348 * AnoxicNO OxicNO * OxicNO * About 280 µmol NO (g protein) h was produced. About 15 p.p.m. NO was formed by the gas-phase oxidation of NO by O (2NOO 2NO ; Pires et al., 1994) and was detectable in the gas phase of these experiments. Table 2. Effect of NO on the inhibition of ammonia oxidation activity of N. eutropha by acetylene incubated in the presence of 100 p.p.m. O 2 Activity was determined after 15 min of acetylene exposure time. As a control, cells were incubated without acetylene. Activity is expressed as µmol NH+ (g protein) h. The standard deviation for 12 replicated experiments was6%. According to the Mann Whitney U-Test, the increasing ammonia oxidation activity with increasing NO concentrations up to 250 p.p.m. is highly significant (error rate of 0005). Without acetylene, the activity remained unchanged between 0 and 250 p.p.m. (error rate 0005). Reaction conditions NO concentration (p.p.m.) Activity in the presence of C Activity without C detectable between ammonia consumption and NO production. Although the cells did not oxidize ammonia under anoxic conditions with NO (expt 4), demonstrating that NO is not a suitable oxidant for ammonia oxidation, a low ammonia oxidation activity was detectable when NO was added under oxic conditions (expt 6). This result may reflect the fact that small amounts of NO (15 p.p.m.) were available to the cells (formed by the oxidation of NO by O ). Fig. 3. The effect of NO on 14 C labelling of polypeptides during incubation of ammonia-oxidizing N. eutropha cells with 14 C 2 H 2. The O 2 concentration was adjusted to 100 p.p.m. The position of the 30 kda molecular mass marker is shown on the left side of the fluorogram. Cells were incubated without NO for 0, 7 and 15 min, respectively (lanes 1 3) or in an atmosphere with 1000 p.p.m. NO for 0, 7 and 15 min, respectively (lanes 4 6). shows that the pretreatment with acetylene was successful and O -dependent ammonia oxidation was inactivated completely. If NO was added under both oxic and anoxic conditions (expts 3 and 5), N. eutropha cells oxidized ammonia. The ammonia oxidation activities of these acetylene-pretreated cells of 1348 µmol NH+ (g protein) h (anoxic) and µmol NH+ (g protein) h (oxic) were approximately the same as in non-treated cells [anoxic: 145 µmol NH+ (g protein) h ]. The ability of the cells to oxidize ammonia with NO as oxidant was not affected by acetylene treatment under both oxic and anoxic conditions. During NO -dependent ammonia oxidation, NO was consumed. Ammonia and NO were consumed in a ratio of approximately 1:2. The same ratio was In further experiments N. eutropha cells were incubated in the presence of C, the NO and NO concentration was respectively increased up to 1000 p.p.m. and the O concentration was adjusted to 100 p.p.m. The labelling kinetics of the 27 kda polypeptide and inactivation kinetics of the ammonia oxidation were monitored. A lower incorporation activity of C in the 27 kda polypeptide (Fig. 3) and a significantly reduced inhibition of ammonia oxidation activity (Table 2) was observed for cells which were incubated in a gas atmosphere with NO concentrations up to 250 p.p.m. When the atmosphere was supplied with NO concentrations between 300 and 1000 p.p.m., NO had an inhibitory effect on ammonia oxidation (Table 2, control without acetylene). The NO concentration did not affect the labelling and inactivation kinetics. Independent of the NO concentration after 15 min, no additional incorporation of C into the polypeptide was detected and aerobic ammonia oxidation was inhibited completely (data not shown). Influence of O 2 and ammonia concentrations on the inhibitory effect of acetylene O concentrations in the gas atmosphere were varied between 01, 02, 05, 1 and 5%, and ammonia concentrations varied between 02, 1, 5, 10, 50 mm. Acetylene (200 p.p.m.) was added to the gaseous phase above the 2250

5 Nitrosomonas eutropha ammonia oxidation Table 3. Effect of ammonia and O 2 concentrations on ammonia oxidation activity of N. eutropha cells incubated in the presence of acetylene Experiments were performed with cell suspensions of 510 cells ml. Activity is expressed as µmol NH+ (g protein) h. At 1 and 5% O no activity was detected at any ammonia concentration. The standard deviation for four replicated experiments was 8%. According to the Mann Whitney U- Test, the reduced inhibitory effect of acetylene on the ammonia oxidation activity under oxygen-limited conditions is highly significant (error rate of 0005). There is no significant relationship between ammonia concentration and ammonia oxidation activity (error rate of 005). Oxygen concentration (%) Ammonia concentration (mm) cell suspension. The ammonia oxidation activity was measured after 10 min incubation. Obviously, the rate of inhibition fell as the O concentration decreased (Table 3). In contrast to earlier reports (Hyman & Wood, 1985), statistical analysis did not show a significant protective effect of high ammonia concentrations against acetylene inhibition. DISCUSSION On the basis of the results presented above, a new hypothetical model of ammonia oxidation by N. eutropha was developed. A new complex role of nitrogen oxides on the metabolism of these organisms is proposed. The major aim of this study was to investigate the effects of acetylene on aerobic and anaerobic ammonia oxidation. An important observation from the experiments is that anaerobic ammonia oxidation with NO (N O ) as oxidant was not affected by acetylene. N. eutropha cells treated with acetylene oxidized ammonia even under oxic conditions if NO was available. The ammonia oxidation activity of acetylene-treated cells in the presence of NO was almost the same under both oxic and anoxic conditions. Ammonia oxidation was not detectable in the absence of NO. Therefore, it is possible to distinguish between NO -dependent and O - dependent ammonia oxidation. One of the most significant observations is that the 27 kda polypeptide of AMO was not labelled during anoxic NO -dependent ammonia oxidation. When O was added the labelling of this polypeptide started immediately. An influence of the ammonia concentration on the labelling reaction was not observed. It is interesting to note that not only is an active AMO (Hyman & Wood, 1985) necessary for labelling the 27 kda polypeptide, but also the presence of O. The results of this study clearly demonstrate that it is necessary to distinguish between NO -dependent and O -dependent ammonia oxidation. Further experiments were performed to give evidence of whether the potential oxidizing agents (O and N O ) competed for the same active site. If so, increasing NO concentrations should protect the 27 kda polypeptide against labelling with C H and should also protect ammonia oxidation against inhibition. Competition experiments showed that NO was able to protect neither the 27 kda polypeptide against labelling, nor AMO against inactivation. It is surprising that NO protected aerobic ammonia oxidation against the inhibitory effect of acetylene. The most plausible interpretation of these observations is that NO and acetylene compete for the same active site, while NO and NO act at different sites. The results of this study allowed a modified hypothetical model of ammonia oxidation in N. eutropha. Fig. 4(a c) shows the model for O - and NO -dependent ammonia oxidation. Experiments showed that anaerobic ammonia oxidation is dependent on the presence of the oxidizing agent N O (dimeric form of NO ). NO was produced in stoichiometric amounts and was released into the gas phase. According to these results, Fig. 4(a) was developed. When NO was added under anoxic conditions, ammonia was oxidized and hydroxylamine occurred as an intermediate, while NO was formed as an end product (see equation 4 below). Hydroxylamine is further oxidized to nitrite (Schmidt & Bock, 1998). Although NO is used as oxidizing agent, NO concentrations above 50 p.p.m. are toxic and inhibit ammonia oxidation (Schmidt & Bock, 1997). The situation is more complex under oxic conditions. In the presence of O, the NO produced can be oxidized to NO. Therefore, only small amounts of NO were detectable in the gas phase of N. eutropha cell suspensions. According to the model (Fig. 4b, equation 4), N O is the oxidizing agent under oxic conditions. Hydroxylamine and NO are produced as intermediates. While hydroxylamine is further oxidized to nitrite, NO is (re)oxidized to NO (N O ) (equation 5). NN O 2H+2e NH OH2NOH O (4) 2NOO 2NO (N O ) (5) NO 2H+2e NH OHH O (6) The sum of equations 4 and 5, given in equation 6, has been described before as the reaction of aerobic ammonia oxidation (Anderson & Hooper, 1983; Dua et al., 1979; Hyman & Wood, 1985; Hyman & Arp, 1993; Rees & Nason, 1966), but in agreement with the new hypothetical model, though the total consumption rates (ammonia, O ) and production rates (hydroxylamine as intermediate) remain unchanged, the mechanism of the reaction is different. Several lines of evidence suggest that this hypothetical model (Fig. 4a c) describes both oxic and anoxic ammonia oxidation by N. eutropha. First, NO (N O ) 2251

6 I. SCHMIDT, E. BOCK and M. S. M. JETTEN (a) (b) (c) Fig. 4. Hypothetical model of ammonia oxidation by N. eutropha (NO x cycle). (a) NO 2 -dependent ammonia oxidation under anoxic conditions, (b) aerobic ammonia oxidation and (c) NO 2 -dependent ammonia oxidation of acetylene-treated cells. Dotted lines: NO or NO 2 added to the gas atmosphere to act as substrates. is a suitable oxidizing agent under anoxic conditions, leading to the formation of NO. Second, the addition of NO or NO increases ammonia oxidation activity under oxic conditions (Zart & Bock, 1998). The addition of NO x (NO or NO ) may supply the NO x cycle with additional substrate (Fig. 4b), increasing the amount of oxidant available to the cells and finally increasing ammonia oxidation activity. Third, increasing NO concentrations protected the 27 kda polypeptide from labelling. This result indicates that NO and acetylene may compete for the same binding site at the 27 kda polypeptide. Furthermore, the 27 kda polypeptide was only labelled in the presence of O and only O - dependent ammonia oxidation was inhibited. NO - dependent ammonia oxidation was not affected. If acetylene binds in the presence of O at the NO-binding site, it may inactivate the NO oxidizing function of the AMO (Fig. 4c) as a result of the attempted oxidation of the acetylene triple bond. The mechanism as such was proposed earlier, but the ammonia-binding site was suspected to be the binding site for acetylene (Hyman & Arp, 1992). Inactivating the NO oxidizing function of the AMO leads to inhibition of aerobic O -dependent ammonia oxidation, because the enzyme is now unable to provide the AMO with NO (N O ). The lack of NO oxidizing activity could be compensated by the addition of NO. Under anoxic conditions NO is an end product, because O is not available, but under oxic conditions the acetylene-inhibited enzyme is necessary to produce stoichiometric amounts of NO. Without acetylene inhibition, NO is reoxidized to NO and is therefore not detectable in the gas atmosphere of the cell suspensions. Fourth, NO -dependent ammonia oxidation under anoxic conditions is not affected by acetylene. While AMO is active under these conditions, the 27 kda polypeptide is not labelled. Obviously, not only an active AMO, but also the presence of O is necessary for labelling. Summarizing, the model according to Fig. 4(a c) (ammonia oxidation with NO x cycle) explains the results of this study. N O is the oxidizing agent for ammonia oxidation. Besides hydroxylamine, NO is produced. Under oxic conditions NO is reoxidized to NO (N O ), again providing the AMO with the oxidizing agent (NO x cycle). Since detectable NO x concentrations were small, nitrogen oxides seem to cycle in the cell (possibly enzyme-bound) and, therefore, the total amount of NO x per cell is expected to be low. The addition of acetylene leads to an inhibition of ammonia oxidation. The cells restart ammonia oxidation when NO is added and NO is produced in stoichiometric amounts (ratio of NO consumption to NO production about 1:1). The stoichiometry of this reaction is the same that was observed for anaerobic NO -dependent ammonia oxidation. This hypothetical model is in good agreement with the described mechanisms of aerobic ammonia oxidation (Anderson & Hooper, 1983; Dua et al., 1979; Hyman & Wood, 1985; Hyman & Arp, 1993; Rees & Nason, 1966). According to the new model, O is used to oxidize NO. The product, NO, is then consumed during ammonia oxidation. The oxygen of hydroxylamine still originates from molecular oxygen, but is incorporated via NO. REFERENCES Anderson, K. K. & Hooper, A. B. (1983). O and O are each the source of one O in NO produced from N by Nitrosomonas; N-NMR evidence. FEBS Lett 164,

7 Nitrosomonas eutropha ammonia oxidation Arciero, D. M. & Hooper, A. B. (1993). Hydroxylamine oxidoreductase from Nitrosomonas europaea is a multimer of an octaheme subunit. J Biol Chem 268, Bergmann, D. J., Arciero, D. A. & Hooper, A. B. (1994). Organization of the hao gene cluster of Nitrosomonas europaea: genes for two tetraheme c cytochromes. J Bacteriol 176, Bonner, W. M. & Laskey, R. A. (1974). A film detection method for tritium-labelled proteins and nucleic acids in polyacrylamide gels. Eur J Biochem 46, Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Anal Biochem 72, Dua, R. D., Bhandari, B. & Nicholas, D. J. D. (1979). Stable isotope studies on the oxidation of ammonia to hydroxylamine by Nitrosomonas europaea. FEBS Lett 106, Hyman, M. R. & Arp, D. J. (1990). The small-scale production of [U-C]acetylene from BaCO : Application to labeling of ammonia monooxygenase in autotrophic nitrifying bacteria. Anal Biochem 190, Hyman, M. R. & Arp, D. J. (1992). C - and CO -labeling studies of the de novo synthesis of polypeptides by Nitrosomonas europaea during recovery from acetylene and light inactivation of ammonia monooxygenase. J Biol Chem 267, Hyman, M. R. & Arp, D. J. (1993). An electrophoretic study of the thermal-dependent and reductant-dependent aggregation of the 28 kda component of ammonia monooxygenase from Nitrosomonas europaea. Electrophoresis 14, Hyman, M. R. & Arp, D. J. (1995). Effects of ammonia on the de novo synthesis of polypeptides in cells of Nitrosomonas europaea denied ammonia as an energy source. J Biol Chem 177, Hyman, M. R. & Wood, P. M. (1985). Suicidal inactivation and labelling of ammonia monooxygenase by acetylene. Biochem J 227, Hyman, M. R., Page, C. L. & Arp, D. J. (1994). Oxidation of methyl fluoride and dimethyl ether by ammonia monooxygenase in Nitrosomonas europaea. Appl Environ Microbiol 60, Hynes, R. K. & Knowles, R. (1978). Inhibition by acetylene of ammonia oxidation in Nitrosomonas europaea. FEMS Microbiol Lett 4, Pires, M., Rossi, M. J. & Ross, D. S. (1994). Kinetic and mechanistic aspects of the NO oxidation by O in aqueous phase. Int J Chem Kinet 26, Rees, M. & Nason, A. (1966). Incorporation of atmospheric oxygen into nitrite formed during ammonia oxidation by Nitrosomonas europaea. Biochim Biophys Acta 113, Sayavedra-Soto, L. A., Hommes, N. G. & Arp, D. J. (1994). Characterization of the gene encoding hydroxylamine oxidoreductase in Nitrosomonas europaea. J Bacteriol 176, Schmidt, I. & Bock, E. (1997). Anaerobic ammonia oxidation with nitrogen dioxide by Nitrosomonas eutropha. Arch Microbiol 167, Schmidt, I. & Bock, E. (1998). Anaerobic ammonia oxidation by cell-free extracts of Nitrosomonas eutropha. Antonie Leeuwenhoek 73, Suzuki, I. & Kwok, S.-C. (1970). Cell-free ammonia oxidation by Nitrosomonas europaea extracts: Effects of polyamines, Mg+ and albumin. Biochem Biophys Res Commun 39, Suzuki, I., Kwok, S.-C., Dular, U. & Tsang, D. C. Y. (1981). Cell-free ammonia-oxidizing system of Nitrosomonas europaea: general conditions and properties. Can J Biochem 59, Wood, P. M. (1986). Nitrification as a bacterial energy source. In Nitrification, pp Edited by J. I. Prosser. Washington, DC: IRL Press. Zart, D. & Bock, E. (1998). High rate of aerobic nitrification and denitrification by Nitrosomonas eutropha grown in a fermentor with complete biomass retention in the presence of gaseous NO or NO. Arch Microbiol 169, Zart, D., Schmidt, I. & Bock, E. (2000). Significance of gaseous NO for ammonia oxidation by Nitrosomonas eutropha. Antonie Leeuwenhoek 77, Received 29 January 2001; revised 2 April 2001; accepted 26 April

Amino sugars 5-10% Purine and Pyrimidine Bases trace amounts. Undescribed Lots - non-protein N Crude proteins Lignin - N

Amino sugars 5-10% Purine and Pyrimidine Bases trace amounts. Undescribed Lots - non-protein N Crude proteins Lignin - N N in Soil Note: soil concentrations can be anywhere, depending on vegetation, land use, etc. But a substantial amount indeed most (ca. 99%) soil nitrogen is organic Free amino acids trace amounts Amino

More information

Activity-based protein profiling of ammonia monooxygenase in Nitrosomonas

Activity-based protein profiling of ammonia monooxygenase in Nitrosomonas AEM Accepted Manuscript Posted Online 29 January 2016 Appl. Environ. Microbiol. doi:10.1128/aem.03556-15 Copyright 2016, American Society for Microbiology. All Rights Reserved. 1 2 Activity-based protein

More information

A Level. A Level Biology. AQA, OCR, Edexcel. Photosynthesis, Respiration Succession and Nutrient Cycle Questions. Name: Total Marks: Page 1

A Level. A Level Biology. AQA, OCR, Edexcel. Photosynthesis, Respiration Succession and Nutrient Cycle Questions. Name: Total Marks: Page 1 AQA, OCR, Edexcel A Level A Level Biology Photosynthesis, Respiration Succession and Nutrient Cycle Questions Name: Total Marks: Page 1 Q1. The diagram shows the energy flow through a freshwater ecosystem.

More information

SDS-PAGE (Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis):

SDS-PAGE (Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis): SDS-PAGE (Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis): Aim: SDS-PAGE (Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis) is one of the common methods used in the molecular biology

More information

Oxidation of Ammonia by Methane-oxidizing Bacteria and the Effects of Ammonia on Methane Oxidation

Oxidation of Ammonia by Methane-oxidizing Bacteria and the Effects of Ammonia on Methane Oxidation Journal of General Microbiology (1g77), 100,407-412 Printed in Great Britain 407 Oxidation of Ammonia by Methane-oxidizing Bacteria and the Effects of Ammonia on Methane Oxidation By J. G. O'NEILL* AND

More information

Activity-based protein profiling (ABPP) is a well-established

Activity-based protein profiling (ABPP) is a well-established crossmark Activity-Based Protein Profiling of Ammonia Monooxygenase in Nitrosomonas europaea Kristen Bennett, a Natalie C. Sadler, b Aaron T. Wright, b Chris Yeager, c Michael R. Hyman a Department of

More information

EFFECT OF ph AND AMMONIUM IONS ON THE PERMEABILITY

EFFECT OF ph AND AMMONIUM IONS ON THE PERMEABILITY EFFECT OF ph AND AMMONIUM IONS ON THE PERMEABILITY OF BACILLUS PASTEURII W. R. WILEY AND J. L. STOKES Department of Bacteriology and Public Health, Washington State University, Pullman, Washington ABSTRACT

More information

Oxidation-Reduction (Redox) Reactions

Oxidation-Reduction (Redox) Reactions Oxidation-Reduction (Redox) Reactions Def n: Reactions in which one or more electrons is shifted from one element to another (In acid/base, gas transfer, and precipitation reactions discussed previously,

More information

Chapter 5. Partial purification of granule bound Pi-fA synthase

Chapter 5. Partial purification of granule bound Pi-fA synthase Chapter 5 Partial purification of granule bound Pi-fA synthase 5.1 INTRODUCTION The enzyme PHA synthase occurs inside the bacterial cells both, as soluble and granule bound form (Haywood et al., 1989).

More information

Investigating the Toxicity of Silver Ions to Chronically Exposed Nitrifying Bacteria

Investigating the Toxicity of Silver Ions to Chronically Exposed Nitrifying Bacteria Investigating the Toxicity of Silver Ions to Chronically Exposed Nitrifying Bacteria Issa El Haddad San Diego State University Summer 2012-Fall 2012 Dr. Tyler Radniecki Department of Civil, Construction,

More information

Gene expression profiles of Nitrosomonas europaea, an obligate chemolithotroph. Daniel Arp. Department of Botany and Plant Pathology.

Gene expression profiles of Nitrosomonas europaea, an obligate chemolithotroph. Daniel Arp. Department of Botany and Plant Pathology. Gene expression profiles of Nitrosomonas europaea, an obligate chemolithotroph. Daniel Arp. Department of Botany and Plant Pathology. Oregon State University, Corvallis OR. 97331 Technical report for product

More information

Title: Enhancement and evaluation of microbial degradation of endocrine disrupting compounds

Title: Enhancement and evaluation of microbial degradation of endocrine disrupting compounds Title: Enhancement and evaluation of microbial degradation of endocrine disrupting compounds Name: Sanghyun Kim, CVEN Graduate advisor: Robin Autenrieth Report to TWRI Introduction The presence of steroid

More information

Introduction Acetylcholinesterase (AChE) is one of the most important enzymes involved in nerve transmission. The enzyme is bound to cellular membrane

Introduction Acetylcholinesterase (AChE) is one of the most important enzymes involved in nerve transmission. The enzyme is bound to cellular membrane Cell Technology PROTOCOL acella - AChE * Bioluminescence Assay for Monitoring Acetylcholinesterase Activity *Patent Pending Contact Information Address Cell Technology Inc 950 Rengstorff Ave Suite D Mountain

More information

Electronic Supplementary Information for:

Electronic Supplementary Information for: Electronic Supplementary Material (ESI) for Energy & Environmental Science. This journal is The Royal Society of Chemistry 216 Electronic Supplementary Information for: Nitrogenase bioelectrocatalysis:

More information

Development of a key - enzyme based model for cometabolism a case study on cometabolism of trichloroethylene by methanotrohpic bacteria

Development of a key - enzyme based model for cometabolism a case study on cometabolism of trichloroethylene by methanotrohpic bacteria 20 5 2000 9 ACTA SCIEN TIAE CIRCUMSTAN TIAE Vol. 20,No. 5 Sep.,2000 :025322468 (2000)20520558205 :X172 :A 1, R. Bajpai 2 (1., 100084 ; 2. Dept. of Chemical Engineering, University of Missouri, Columbia,

More information

CHAPTER 3 Effect of heavy metals on E. coli

CHAPTER 3 Effect of heavy metals on E. coli CHAPTER 3 Effect of heavy metals on E. coli 3.1 CHAPTER INTRODUCTION Heavy metals are toxic and harmful to organisms. A number of bacteria develop processes which withstand the effects of these pollutants.

More information

Copyright WILEY-VCH Verlag GmbH, D Weinheim, Supporting Information for Angew. Chem. Int. Ed. Z 18050

Copyright WILEY-VCH Verlag GmbH, D Weinheim, Supporting Information for Angew. Chem. Int. Ed. Z 18050 Copyright WILEY-VCH Verlag GmbH, D-69451 Weinheim, 2001. Supporting Information for Angew. Chem. Int. Ed. Z 18050 Protein Affinity Labeling Mediated by Genetically Encoded Peptide Tags Frank Amini, Thomas

More information

nephridii were detected by detaching flasks from the manometers and analyzing samples of the culture fluid. Growth

nephridii were detected by detaching flasks from the manometers and analyzing samples of the culture fluid. Growth JOURNAL OF BACTERIOLOGY, Mar. 1970, p. 821-826 Copyright a 1970 American Society for Microbiology Vol. 101, No. 3 Printed in U.S.A. Production of Nitric Oxide and Nitrous Oxide During Denitrification by

More information

Production of baker s yeast by fermentation

Production of baker s yeast by fermentation Production of baker s yeast by fermentation 1 1. THEORY The primary task of bioengineering is to design and operate bioreactors with the best possible economic effect. Such optimization is not possible

More information

Correlation of Optical and EPR Signals with the P460 Heme of Hydroxylamine Oxidoreductase from Nitrosomonas europaea

Correlation of Optical and EPR Signals with the P460 Heme of Hydroxylamine Oxidoreductase from Nitrosomonas europaea Biochemistry 1998, 37, 523-529 523 Correlation of Optical and EPR Signals with the P460 Heme of Hydroxylamine Oxidoreductase from Nitrosomonas europaea David M. Arciero, Adina Golombek, Michael P. Hendrich,

More information

1. (rate of) {production of / energy incorporated into / eq} {biomass / organic material / organic molecules / tissue} ;

1. (rate of) {production of / energy incorporated into / eq} {biomass / organic material / organic molecules / tissue} ; 1(a)(i) 1. (rate of) {production of / energy incorporated into / eq} {biomass / organic material / organic molecules / tissue} ; 2. reference to {losses in respiration / GPP- R } ; 3. in {producers / plants

More information

Biological Chemistry and Metabolic Pathways

Biological Chemistry and Metabolic Pathways Biological Chemistry and Metabolic Pathways 1. Reaction a. Thermodynamics b. Kinetics 2. Enzyme a. Structure and Function b. Regulation of Activity c. Kinetics d. Inhibition 3. Metabolic Pathways a. REDOX

More information

9/25/2011. Outline. Overview: The Energy of Life. I. Forms of Energy II. Laws of Thermodynamics III. Energy and metabolism IV. ATP V.

9/25/2011. Outline. Overview: The Energy of Life. I. Forms of Energy II. Laws of Thermodynamics III. Energy and metabolism IV. ATP V. Chapter 8 Introduction to Metabolism Outline I. Forms of Energy II. Laws of Thermodynamics III. Energy and metabolism IV. ATP V. Enzymes Overview: The Energy of Life Figure 8.1 The living cell is a miniature

More information

INTRODUCTION bioactive compounds Pigmentation chromobacteria water soluble water insoluble

INTRODUCTION bioactive compounds Pigmentation chromobacteria water soluble water insoluble INTRODUCTION So far we have witnessed several useful applications of microbes including applications in food and the bioremediation of the environment. Besides consuming the desired substrate (oil) and

More information

Supramolecular stabilization of the acid tolerant L-arabinose isomerase from the food-grade Lactobacillus sakei

Supramolecular stabilization of the acid tolerant L-arabinose isomerase from the food-grade Lactobacillus sakei Supporting Information Supramolecular stabilization of the acid tolerant L-arabinose isomerase from the food-grade Lactobacillus sakei Said Jebors a, Yannick Tauran a, Nushin Aghajari b, Samira Boudebbouze

More information

Chemistry 40S Chemical Kinetics (This unit has been adapted from

Chemistry 40S Chemical Kinetics (This unit has been adapted from Chemistry 40S Chemical Kinetics (This unit has been adapted from https://bblearn.merlin.mb.ca) Name: 1 2 Lesson 1: Introduction to Kinetics Goals: Identify variables used to monitor reaction rate. Formulate

More information

Chapter 8: An Introduction to Metabolism. 1. Energy & Chemical Reactions 2. ATP 3. Enzymes & Metabolic Pathways

Chapter 8: An Introduction to Metabolism. 1. Energy & Chemical Reactions 2. ATP 3. Enzymes & Metabolic Pathways Chapter 8: An Introduction to Metabolism 1. Energy & Chemical Reactions 2. ATP 3. Enzymes & Metabolic Pathways 1. Energy & Chemical Reactions 2 Basic Forms of Energy Kinetic Energy (KE) energy in motion

More information

LAB. FACTORS INFLUENCING ENZYME ACTIVITY

LAB. FACTORS INFLUENCING ENZYME ACTIVITY AP Biology Date LAB. FACTORS INFLUENCING ENZYME ACTIVITY Background Enzymes are biological catalysts capable of speeding up chemical reactions by lowering activation energy. One benefit of enzyme catalysts

More information

bacteriologist has not sufficient chemical training or the time to

bacteriologist has not sufficient chemical training or the time to THE VAN SLYKE METHOD FOR THE DETERMINATION OF AMINO-ACID NITROGEN AS APPLIED TO THE STUDY OF BACTERIAL CULTURES R. W. LAMSON From the Department of Bacteriology and Immunity, Harvard Medical School Received

More information

Keywords: dimer dissociation, Streptomyces subtilisin inhibitor, rate constant

Keywords: dimer dissociation, Streptomyces subtilisin inhibitor, rate constant J. Biol. Macromol. 8(2), 38-47 (2008) Article Kinetic study on the dissociation of a dimeric protein, Streptomyces Subtilisin Inhibitor Keiko Momma 1,2, Ben ichiro Tonomura, and Keitaro Hiromi Department

More information

METHANE FORMATION; FERMENTATION OF ETHANOL IN THE ABSENCE OF CARBON DIOXIDE BY METHANOBACILLUS OMELIANSKII'

METHANE FORMATION; FERMENTATION OF ETHANOL IN THE ABSENCE OF CARBON DIOXIDE BY METHANOBACILLUS OMELIANSKII' METHANE FORMATION; FERMENTATION OF ETHANOL IN THE ABSENCE OF CARBON DIOXIDE BY METHANOBACILLUS OMELIANSKII' A. T. JOHNS2 AND H. A. BARKER Department of Biochemistry, University of California, Berkeley,

More information

C a h p a t p e t r e r 6 E z n y z m y e m s

C a h p a t p e t r e r 6 E z n y z m y e m s Chapter 6 Enzymes 4. Examples of enzymatic reactions acid-base catalysis: give and take protons covalent catalysis: a transient covalent bond is formed between the enzyme and the substrate metal ion catalysis:

More information

Prokaryotes Vs. Eukaryotes

Prokaryotes Vs. Eukaryotes The Microbial World Prokaryotes Vs. Eukaryotes Mircrobes of the Ocean Primary Producers Are the organisms that produce bio-mass from inorganic compounds (autotrophs). -Photosynthetic autotrophs Phytoplankton

More information

(Supplementary Information)

(Supplementary Information) (Supplementary Information) Peptidomimetic-based Multi-Domain Targeting Offers Critical Evaluation of Aβ Structure and Toxic Function Sunil Kumar 1*, Anja Henning-Knechtel 2, Mazin Magzoub 2, and Andrew

More information

BIOLOGY 10/11/2014. An Introduction to Metabolism. Outline. Overview: The Energy of Life

BIOLOGY 10/11/2014. An Introduction to Metabolism. Outline. Overview: The Energy of Life 8 An Introduction to Metabolism CAMPBELL BIOLOGY TENTH EDITION Reece Urry Cain Wasserman Minorsky Jackson Outline I. Forms of Energy II. Laws of Thermodynamics III. Energy and metabolism IV. ATP V. Enzymes

More information

Biophysics 490M Project

Biophysics 490M Project Biophysics 490M Project Dan Han Department of Biochemistry Structure Exploration of aa 3 -type Cytochrome c Oxidase from Rhodobacter sphaeroides I. Introduction: All organisms need energy to live. They

More information

Lecture 10: Cyclins, cyclin kinases and cell division

Lecture 10: Cyclins, cyclin kinases and cell division Chem*3560 Lecture 10: Cyclins, cyclin kinases and cell division The eukaryotic cell cycle Actively growing mammalian cells divide roughly every 24 hours, and follow a precise sequence of events know as

More information

An Introduction to Metabolism

An Introduction to Metabolism LECTURE PRESENTATIONS For CAMPBELL BIOLOGY, NINTH EDITION Jane B. Reece, Lisa A. Urry, Michael L. Cain, Steven A. Wasserman, Peter V. Minorsky, Robert B. Jackson Chapter 8 An Introduction to Metabolism

More information

Denitrification, Nitrate Reduction, and Oxygen Consumption in Coastal and Estuarine Sediments

Denitrification, Nitrate Reduction, and Oxygen Consumption in Coastal and Estuarine Sediments APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Mar. 1982, p. 648-653 99-224/82/3648-6$2./ Vol. 43, No. 3 Denitrification, Nitrate Reduction, and Oxygen Consumption in Coastal and Estuarine Sediments TAKASHI NISHIO,

More information

Using the shake culture technique, it was possible to separate a Methanosarcina

Using the shake culture technique, it was possible to separate a Methanosarcina STUDIES ON THE METHANE FERMENTATION IX. THE ORIGIN OF METHANE IN THE ACETATE AND METHANOL FERMENTATIONS BY METHANOSARCINA1 THRESSA C. STADTMAN2 AND H. A. BARKER Diviaion of Plant Biochemistry, University

More information

CHAPTER 2. Stoichiometry a nd and Bacterial Energetics

CHAPTER 2. Stoichiometry a nd and Bacterial Energetics CHAPTER 2. Stoichiometry and Bacterial Energetics 2. Stoichiometry and Bacterial Energetics Mass balance: the important concept in the engineering design of system for biological treatment Determine the

More information

Affinity labels for studying enzyme active sites. Irreversible Enzyme Inhibition. Inhibition of serine protease with DFP

Affinity labels for studying enzyme active sites. Irreversible Enzyme Inhibition. Inhibition of serine protease with DFP Irreversible Enzyme Inhibition Irreversible inhibitors form stable covalent bonds with the enzyme (e.g. alkylation or acylation of an active site side chain) There are many naturally-occurring and synthetic

More information

HYDROGEN. technique. uptake/co2 uptake, which according to equation (1) should equal 4, has

HYDROGEN. technique. uptake/co2 uptake, which according to equation (1) should equal 4, has 184 BA CTERIOLOG Y: H. A. BARKER PROC. N. A. S. STUDIES ON THE METHANE FERMENTATION. VI. THE IN- FLUENCE OF CARBON DIOXIDE CONCENTRATION ON THE RATE OF CARBON DIOXIDE REDUCTION BY MOLECULAR HYDROGEN By

More information

Recommended Procedures for Labeling. Labeling Proteins with Amine-Reactive ATTO-Labels (NHS-Esters) Introduction

Recommended Procedures for Labeling. Labeling Proteins with Amine-Reactive ATTO-Labels (NHS-Esters) Introduction Recommended Procedures for Labeling Introduction ATTO-TEC offers a large variety of high-quality dyes for labeling amino and thiol groups. ATTO reactive dyes cover the spectral region from 350 nm in the

More information

A catalase-peroxidase from a newly isolated thermoalkaliphilic Bacillus sp. with potential for the treatment of textile bleaching effluents

A catalase-peroxidase from a newly isolated thermoalkaliphilic Bacillus sp. with potential for the treatment of textile bleaching effluents A catalase-peroxidase from a newly isolated thermoalkaliphilic Bacillus sp. with potential for the treatment of textile bleaching effluents Marinka Gudelj, Gilbert Otto Fruhwirth, Andreas Paar, Fritz Lottspeich,

More information

SDS-polyacrylamide gel electrophoresis

SDS-polyacrylamide gel electrophoresis SDS-polyacrylamide gel electrophoresis Protein Isolation and Purification Protein purification is a series of processes intended to isolate one or a few proteins from a complex mixture, usually cells,

More information

An Introduction to Metabolism

An Introduction to Metabolism Chapter 8 An Introduction to Metabolism Edited by Shawn Lester PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley

More information

CHEMICAL OXIDATION. The use of oxidizing agents without the need of microorganisms for the reactions to proceed

CHEMICAL OXIDATION. The use of oxidizing agents without the need of microorganisms for the reactions to proceed CHEMICAL OXIDATION The use of oxidizing agents without the need of microorganisms for the reactions to proceed oxidizing agents : O 3, H 2 O 2, Cl 2 or HOCl or O 2 etc catalysts : ph, transition metals,

More information

Chapter 6. Ground Rules Of Metabolism

Chapter 6. Ground Rules Of Metabolism Chapter 6 Ground Rules Of Metabolism Alcohol Dehydrogenase An enzyme Breaks down ethanol and other toxic alcohols Allows humans to drink Metabolism Is the totality of an organism s chemical reactions Arises

More information

Supporting Information

Supporting Information Supporting Information Mechanistic Study of Alcohol Oxidation by the / /DMSO Catalyst System and Implications for the Development of Improved Aerobic Oxidation Catalysts Bradley A. Steinhoff, Shannon R.

More information

Kinetics. Chapter 14. Chemical Kinetics

Kinetics. Chapter 14. Chemical Kinetics Lecture Presentation Chapter 14 Yonsei University In kinetics we study the rate at which a chemical process occurs. Besides information about the speed at which reactions occur, kinetics also sheds light

More information

Bis sulfone Reagents. Figure 1.

Bis sulfone Reagents. Figure 1. Bis sulfone Reagents An intact IgG molecule has four accessible inter chain disulfide bonds that can be reduced to form eight free cysteine thiols, which can serve as sites for conjugation. The reaction

More information

Ch. 3 Metabolism and Enzymes

Ch. 3 Metabolism and Enzymes Ch. 3 Metabolism and Enzymes Originally prepared by Kim B. Foglia. Revised and adapted by Nhan A. Pham Flow of energy through life Life is built on chemical reactions that enable energy to flow through

More information

Protease Inhibitor Cocktail A (1 tablet / 7 10 ml, Roche Cat# ) Protease inhibitor Cocktail B (0.5ml per 250ml, Calbiochem Cat# )

Protease Inhibitor Cocktail A (1 tablet / 7 10 ml, Roche Cat# ) Protease inhibitor Cocktail B (0.5ml per 250ml, Calbiochem Cat# ) Protocol for Western Blotting Tissue/Cell Sample Preparation Lysis Buffer 1 (ph8.0) o 50mM Tris-Cl o 150mM NaCl o 1% v/v NP40 o protease inhibitor cocktail A/B Lysis Buffer 2 (RIPA) (ph 8.0) o 50mM Tris-Cl

More information

Supporting Information

Supporting Information Supporting Information Wiley-VCH 2008 69451 Weinheim, Germany Electronic Supporting Information A Highly Selective Luminescence Switch-on Probe to Histidine/Histidine-rich proteins and Its Application

More information

Effects of nanomaterial disposal on wastewater treatment microbial communities and toxicity implications

Effects of nanomaterial disposal on wastewater treatment microbial communities and toxicity implications 2013 Sustainable Nanotechnology Organization Conference Effects of nanomaterial disposal on wastewater treatment microbial communities and toxicity implications Yanjun Ma Jacob Metch, Eric Vejerano, Amy

More information

Supporting information. An improved photo-induced fluorogenic alkene-tetrazole reaction for protein labeling

Supporting information. An improved photo-induced fluorogenic alkene-tetrazole reaction for protein labeling Supporting information An improved photo-induced fluorogenic alkene-tetrazole reaction for protein labeling X. Shang, 1 R. Lai, 1,3 X. Song, 1 H. Li, 1,3 W. Niu, 2 and J. Guo 1 * 1. Department of Chemistry,

More information

Protein assay of SpectroArt 200

Protein assay of SpectroArt 200 Technical Bulletin 14 SpectroArt 200 12/01/2008 Protein assay of SpectroArt 200 MATERIAL BSA: Albumin, bovine serum (Sigma) PBS: BupH TM Phosphate Buffered Saline packs (PIERCE) Bradford assay: Bio-Rad

More information

Biochemical bases for energy transformations. Biochemical bases for energy transformations. Nutrition 202 Animal Energetics R. D.

Biochemical bases for energy transformations. Biochemical bases for energy transformations. Nutrition 202 Animal Energetics R. D. Biochemical bases for energy transformations Biochemical bases for energy transformations Nutrition 202 Animal Energetics R. D. Sainz Lecture 02 Energy originally from radiant sun energy Captured in chemical

More information

CHAPTER 8. An Introduction to Metabolism

CHAPTER 8. An Introduction to Metabolism CHAPTER 8 An Introduction to Metabolism WHAT YOU NEED TO KNOW: Examples of endergonic and exergonic reactions. The key role of ATP in energy coupling. That enzymes work by lowering the energy of activation.

More information

Oxidative Phosphorylation versus. Photophosphorylation

Oxidative Phosphorylation versus. Photophosphorylation Photosynthesis Oxidative Phosphorylation versus Photophosphorylation Oxidative Phosphorylation Electrons from the reduced cofactors NADH and FADH 2 are passed to proteins in the respiratory chain. In eukaryotes,

More information

3. Organic Geochemisty Organic Chemistry is the chemistry... of Carbon -Morrison and Boyd

3. Organic Geochemisty Organic Chemistry is the chemistry... of Carbon -Morrison and Boyd 3. Organic Geochemisty Organic Chemistry is the chemistry... of Carbon -Morrison and Boyd Definitions, Nomenclature Organic Compound Solubility Octanol-Water Partition Coefficient Organic Compound Sorption

More information

Acetylene Inhibition of Azotobacter vinelandii Hydrogenase: Acetylene Binds Tightly to the Large Subunit?

Acetylene Inhibition of Azotobacter vinelandii Hydrogenase: Acetylene Binds Tightly to the Large Subunit? 3158 Biochemistry 1992, 31, 3158-3165 Vermeglio, A., & Clayton, R. K. (1977) Biochim. Biophys. Acta 461, 159-165. Von Jagow, G., & Engle, W. D. (1981) FEBS Lett. 136, 19-24. Von Jagow, G., & Ohnishi, T.

More information

Student Manual for Aerobic Alcohol Oxidation Using a Copper(I)/TEMPO Catalyst System

Student Manual for Aerobic Alcohol Oxidation Using a Copper(I)/TEMPO Catalyst System Student Manual for Aerobic Alcohol Oxidation Using a Copper(I)/TEMPO Catalyst System icholas J. Hill, Jessica M. Hoover and Shannon S. Stahl* Department of Chemistry, University of Wisconsin-Madison, 1101

More information

Supporting Information. Simple Bacterial Detection and High-Throughput Drug Screening. Based on Graphene-Enzyme Complex

Supporting Information. Simple Bacterial Detection and High-Throughput Drug Screening. Based on Graphene-Enzyme Complex Supporting Information Simple Bacterial Detection and High-Throughput Drug Screening Based on Graphene-Enzyme Complex Juan-Li, Ling-Jie Wu, Shan-Shan Guo, Hua-E Fu, Guo-Nan Chen* and Huang-Hao Yang* The

More information

Biology Reading Assignment: Chapter 9 in textbook

Biology Reading Assignment: Chapter 9 in textbook Biology 205 5.10.06 Reading Assignment: Chapter 9 in textbook HTTP://WUNMR.WUSTL.EDU/EDUDEV/LABTUTORIALS/CYTOCHROMES/CYTOCHROMES.HTML What does a cell need to do? propagate itself (and its genetic program)

More information

Tentative Identification of Methanogenic Bacteria by Fluorescence Microscopy

Tentative Identification of Methanogenic Bacteria by Fluorescence Microscopy APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Mar. 1977, p. 713-717 Copyright (C 1977 American Society for Microbiology Vol. 33, No. 3 Printed in U.S.A. Tentative Identification of Methanogenic Bacteria by Fluorescence

More information

Catalysis. Catalytic nanoparticles have been used for centuries to facilitate desirable chemical reactions and to suppress unwanted byproducts.

Catalysis. Catalytic nanoparticles have been used for centuries to facilitate desirable chemical reactions and to suppress unwanted byproducts. Catalysis Catalytic nanoparticles have been used for centuries to facilitate desirable chemical reactions and to suppress unwanted byproducts. Gerhard Ertl received the 2007 Chemistry Nobel Prize for converting

More information

Biological Sciences 11 Spring Experiment 4. Protein crosslinking

Biological Sciences 11 Spring Experiment 4. Protein crosslinking Biological Sciences 11 Spring 2000 Experiment 4. Protein crosslinking = C - CH 2 - CH 2 - CH 2 - C = H H GA Cl - H 2 N N H 2 Cl - C - CH 2 - CH 2 - CH 2 - CH 2 - CH 2 - CH 2 - C DMS CH 3 CH 3 N - - C -

More information

Effect of Oxygen-Supply Rates on Growth

Effect of Oxygen-Supply Rates on Growth APPLIED MICROBIOLOGY, Jan., 1965 Vol. 13, No. 1 Copyright 1965 American Society for Microbiology Printed in U.S.A. Effect of Oxygen-Supply Rates on Growth of Escherichia coli II. Comparison of Results

More information

An Introduction to Metabolism

An Introduction to Metabolism CAMPBELL BIOLOGY IN FOCUS URRY CAIN WASSERMAN MINORSKY REECE 6 An Introduction to Metabolism Lecture Presentations by Kathleen Fitzpatrick and Nicole Tunbridge, Simon Fraser University SECOND EDITION The

More information

Supporting Information

Supporting Information Supporting Information Study of molecular conformation and activity-related properties of lipase immobilized onto core-shell structured polyacrylic acid-coated magnetic silica nanocomposite particles Parvaneh

More information

Anaerobic processes. Annual production of cells a -1 Mean generation time in sediments

Anaerobic processes. Annual production of cells a -1 Mean generation time in sediments Anaerobic processes Motivation Where are they? Number of prokaryotes on earth 4-6 * 10 30 Cells in open ocean 1.2 * 10 29 in marine sediments 3.5 * 10 30 in soil 2.6 * 10 29 sub-terrestrial 0.5 2.5 * 10

More information

1. Introduction 2. Materials and methods

1. Introduction 2. Materials and methods EFFECTS OF HEXACYANOFERRATE ON CYTOCHROME c OXIDASE Boel LANNE, Bo G. MALMSTRGM and Tore VANNGARD Institutionen fdr biokemi, ateborg! *rniversitet och Chalmers tekniskn hiigskola, Fack, S-402 20 GGteborg

More information

Photobleaching resistant polymer supported hexanuclear molybdenum. iodide cluster for photocatalytic oxygenations and photodynamic

Photobleaching resistant polymer supported hexanuclear molybdenum. iodide cluster for photocatalytic oxygenations and photodynamic Electronic Supplementary Material (ESI) for Journal of Materials Chemistry B. This journal is The Royal Society of Chemistry 2016 Supporting Information Photobleaching resistant polymer supported hexanuclear

More information

Studies on Basidiospore Development in Schizophyllum commune

Studies on Basidiospore Development in Schizophyllum commune Journal of General Microbiology (1976), 96,49-41 3 Printed in Great Britain 49 Studies on Basidiospore Development in Schizophyllum commune By SUSAN K. BROMBERG" AND MARVIN N. SCHWALB Department of Microbiology,

More information

This is an example of cellular respiration, which can be used to make beer and wine using different metabolic pathways For these reasons we call this

This is an example of cellular respiration, which can be used to make beer and wine using different metabolic pathways For these reasons we call this Chapter 6 Carvings from ancient Egypt show barley being crushed and mixed with water (left) and then put into closed vessels (centre) where airless conditions are suitable for the production of alcohol

More information

General Biology. The Energy of Life The living cell is a miniature factory where thousands of reactions occur; it converts energy in many ways

General Biology. The Energy of Life The living cell is a miniature factory where thousands of reactions occur; it converts energy in many ways Course No: BNG2003 Credits: 3.00 General Biology 5. An Introduction into Cell Metabolism The Energy of Life The living cell is a miniature factory where thousands of reactions occur; it converts energy

More information

The Chemistry of Life

The Chemistry of Life The Chemistry of Life Things you should be able to do 1. Describe how the unique properties of water support life on Earth. 2. Explain how carbon is uniquely suited to form biological macromolecules. 3.

More information

THE THIRD GENERAL TRANSPORT SYSTEM BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA T YPHIMURI UM KEIKO MATSUBARA, KUNIHARU OHNISHI, AND KAZUYOSHI KIRITANI

THE THIRD GENERAL TRANSPORT SYSTEM BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA T YPHIMURI UM KEIKO MATSUBARA, KUNIHARU OHNISHI, AND KAZUYOSHI KIRITANI J. Gen. Appl. Microbiol., 34, 183-189 (1988) THE THIRD GENERAL TRANSPORT SYSTEM BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA T YPHIMURI UM FOR KEIKO MATSUBARA, KUNIHARU OHNISHI, AND KAZUYOSHI KIRITANI Department

More information

An Introduction to Metabolism

An Introduction to Metabolism CAMPBELL BIOLOGY IN FOCUS Urry Cain Wasserman Minorsky Jackson Reece 6 An Introduction to Metabolism Lecture Presentations by Kathleen Fitzpatrick and Nicole Tunbridge Overview: The Energy of Life The

More information

MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question. 1)

MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question. 1) MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question. 1) 1) Which of the following statements about the atom A) It has 12 neutrons in its nucleus. B) It

More information

BA, BSc, and MSc Degree Examinations

BA, BSc, and MSc Degree Examinations Examination Candidate Number: Desk Number: BA, BSc, and MSc Degree Examinations 2017-8 Department : BIOLOGY Title of Exam: Molecular Biology and Biochemistry Part I Time Allowed: 1 hour and 30 minutes

More information

Lecture #8 9/21/01 Dr. Hirsh

Lecture #8 9/21/01 Dr. Hirsh Lecture #8 9/21/01 Dr. Hirsh Types of Energy Kinetic = energy of motion - force x distance Potential = stored energy In bonds, concentration gradients, electrical potential gradients, torsional tension

More information

Foundations in Microbiology Seventh Edition

Foundations in Microbiology Seventh Edition Lecture PowerPoint to accompany Foundations in Microbiology Seventh Edition Talaro Chapter 2 The Chemistry of Biology Copyright The McGraw-Hill Companies, Inc. Permission required for reproduction or display.

More information

Bio Chemical evolution

Bio Chemical evolution Bio Chemical evolution It is generally agreed by Astronomers, Geologist and Biologist that the earth is about 4.5 to 5 thousand million years old. This theory is the most accepted theory in the field of

More information

RESPIRATION AND FERMENTATION: AEROBIC AND ANAEROBIC OXIDATION OF ORGANIC MOLECULES. Bio 107 Week 6

RESPIRATION AND FERMENTATION: AEROBIC AND ANAEROBIC OXIDATION OF ORGANIC MOLECULES. Bio 107 Week 6 RESPIRATION AND FERMENTATION: AEROBIC AND ANAEROBIC OXIDATION OF ORGANIC MOLECULES Bio 107 Week 6 Procedure 7.2 Label test tubes well, including group name 1) Add solutions listed to small test tubes 2)

More information

BAE 820 Physical Principles of Environmental Systems

BAE 820 Physical Principles of Environmental Systems BAE 820 Physical Principles of Environmental Systems Catalysis of environmental reactions Dr. Zifei Liu Catalysis and catalysts Catalysis is the increase in the rate of a chemical reaction due to the participation

More information

MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question. Figure 2.1

MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question. Figure 2.1 Exam Name MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question. Figure 2.1 1) Which compound in Figure 2.1 is an ester? 1) A) a b c d e Answer: D 2) A scientist

More information

Which row in the chart below identifies the lettered substances in this process?

Which row in the chart below identifies the lettered substances in this process? 1. A biological process that occurs in both plants and animals is shown below. Which row in the chart below identifies the lettered substances in this process? A) 1 B) 2 C) 3 D) 4 2. All life depends on

More information

An Introduction to Metabolism

An Introduction to Metabolism Chapter 8 An Introduction to Metabolism Dr. Wendy Sera Houston Community College Biology 1406 Key Concepts in Chapter 8 1. An organism s metabolism transforms matter and energy, subject to the laws of

More information

SUPPORTING INFORMATION

SUPPORTING INFORMATION SUPPORTING INFORMATION Synthesis of Functionalized Thia Analogues of Phlorins and Covalently Linked Phlorin-Porphyrin Dyads Iti Gupta a, Roland Fröhlich b and Mangalampalli Ravikanth *a a Department of

More information

Bacillus anthracis. Clostridium botulinum Clostridium perfringens and other, but never Gram-negative microbes

Bacillus anthracis. Clostridium botulinum Clostridium perfringens and other, but never Gram-negative microbes SPORES (endospores) the spore is formed inside the parent vegetative cell hence the name endospores The spore is a dehydrated, multishelled structure that protects and allows the bacteria to exist in suspended

More information

CHEMISTRY HIGHER LEVEL

CHEMISTRY HIGHER LEVEL *P15* Pre-Leaving Certificate Examination, 2012 Triailscrúdú na hardteistiméireachta, 2012 CHEMISTRY HIGHER LEVEL TIME: 3 HOURS 400 MARKS Answer eight questions in all These must include at least two questions

More information

Sigma Xi Undergraduate Research Grant Proposal Analysis of the Oligomerization of Ɣ-Glutamylcysteine Ligase

Sigma Xi Undergraduate Research Grant Proposal Analysis of the Oligomerization of Ɣ-Glutamylcysteine Ligase Project Summary Sigma Xi Undergraduate Research Grant Proposal Analysis of the Oligomerization of Ɣ-Glutamylcysteine Ligase Gamma-glutamylcysteine ligase (Ɣ-GCL) catalyzes the rate limiting step in the

More information

Sample. Test Booklet. Subject: SC, Grade: HS MCAS 2007 HS Chemistry. - signup at to remove - Student name:

Sample. Test Booklet. Subject: SC, Grade: HS MCAS 2007 HS Chemistry. - signup at   to remove - Student name: Test Booklet Subject: SC, Grade: HS Student name: Author: Massachusetts District: Massachusetts Released Tests Printed: Thursday February 14, 2013 1 Which of the following Lewis dot structures represents

More information

Chapter 2 Basic Chemistry Outline

Chapter 2 Basic Chemistry Outline Chapter 2 Basic Chemistry Outline 1.0 COMPOSITION OF MATTER 1.1 Atom 1.2 Elements 1.21 Isotopes 1.22 Radioisotopes 1.3 Compounds 1.31 Compounds Formed by Ionic Bonding 1.32 Compounds Formed by Covalent

More information

Center for Cell Imaging Department of Cell Biology

Center for Cell Imaging Department of Cell Biology Center for Cell Imaging Department of Cell Biology Contents Preparation of Colloidal Gold Conjugates Coupling the Protein A to the Gold Particles Purification of the protein A-gold. Storage Influence of

More information

An Introduction to Metabolism

An Introduction to Metabolism Chapter 8 An Introduction to Metabolism PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions from

More information

Biogeochemical Cycles

Biogeochemical Cycles s. 16 2553 Hydrologic cycle cycle Carbon cycle Contents 2 Did you know? 3 (bio) (chemical) (geo;, ) biogeochemical cycles Biogeochemistry = the study of the exchange or flux of materials between living

More information