Pseudopotentials: design, testing, typical errors
|
|
- Vincent Harris
- 5 years ago
- Views:
Transcription
1 Pseudopotentials: design, testing, typical errors Kevin F. Garrity Part 3 National Institute of Standards and Technology (NIST) Uncertainty Quantification in Materials Modeling 2015
2 Testing Basis Sets What level of precision is possible?
3 Is this still typical? Not anymore. Historical published Si lattice constants with PBE. Graphic Kurt Lejaeghere et al
4 Older PSP s vs a difficult test Older HGH and TM sets perform very poorly (>2% error) BR set improved (0-2% latt. const. error) Still not very good. Bennet Phys. Proc (2012)
5 Upcoming work on DFT numerical accuracy Major effort to systematically calculate and compare 15 codes, 40 basis sets many only recently available Focused on elemental crystals With best basis sets / convergence, agreement 1-2 mev/ atom, lattice constant 0.1%, bulk modulus 4% (This is inter-code comparison, not with expt.)
6 Delta test Summarize difference in equation of state: Calculate 7-9 energy vs volume points, fit equation of state Good agreement 1-2 mev/atom Not only possible test, but a reasonable one. K. Lejaeghere et al, Crit. Rev. in Sol. State and Mat. Sci 39, 1-24 (2014)
7 Delta comparison matrix, all-electron Highest convergence settings Good agreement with each other Detailed settings will be published
8 Delta comparison matrix all-codes Recent PSP sets are accurate Only slightly worse than AE This is only elements Need to test compounds Accuracy is not only factor: Speed Compatibility Availability See also
9
10 Typical psps: Motivation my psp set Created ad hoc, often unpublished Only designed / tested for one material Testing not public Quality of public potentials unknown Difficult to reproduce previous work Duplication of effort Doesn t work for high throughput computing
11 1-3 PRL , PRL , PRL 110, See references in Nature Materials 12, (2013), Comp. Mater. Sci 50, 2295 (2011) First principles high-throughput computing Explore many materials to optimize a property At Rutgers Piezoelectrics, ferroelectric, antiferroelectrics 1-3 aflowlib.org, materials project, etc Attempting to calculate ICSD, search for thermoelectrics, etc (~17,000 compounds so far) Searches for stable binary and ternary compounds, photovoltaics, catalysts, battery materials, hydrogen storage, etc 4-5 Most use VASP proprietary
12 Challenges of high-throughput Run 1000's of calculations Need library of atoms Need soft potentials single cutoff Need high transferability Unusual chemical environments Cannot test environments individually
13 My PSP set GBRV pseudopotential library Compatible with Quantum Espresso Abinit jdft, Castep, etc Designed for high-throughput calculations Tested in many structures Fast and accurate K.F. Garrity, J.W. Bennett, K.M. Rabe and D. Vanderbilt, Comput. Mater. Sci. 81, 446 (2014)
14 Specifications of GBRV psp set Optimized for high-throughput Includes H to Bi (except noble gases, f-block) 40 Ryd plane wave-cutoff Accurate stresses Highly transferable Public testing data Reduce duplication of effort Open-source Can be used/improved by community Methodology Ultrasoft pseudopotentials / PAW
15 Ultrasoft potentials / PAWs Relax norm-conserving constraint Add 'missing' charge back later Allows for softer potentials Norm-conserving Oxygen Ultrasoft Oxygen Vanderbilt PRB 41, 7892 (1990)
16 Solid state tests crucial Testing Procedure Test trade-offs of speed / accuracy Compare to all-electron (AE), same approximations Many chemical environments Covalent, ionic, metallic Cubic for convenience
17 Libraries to test GBRV - QE Ultrasoft library for quantum espresso Abinit PAW library for abinit Low 40 Ryd PW cutoff JTH - Abinit PAW library Low 40 Ryd PW cutoff PSLIB - qe-forge.org/gf/project/pslibrary/ Quantum Espresso PAW library High PW cutoff Ryd Low PW cutoff 40 Ryd VASP - PAW library for VASP code PW cutoff Ryd Proprietary
18 Test1: fcc/bcc lattice constants Isolates each atom Metallic bonding
19 Test2: rock salt lattice constants Ionic bonding Note higher errors for other sets
20 Test3: perovskite lattice constants Ionic bonding Test +3, +4, +5 oxidation states
21 Test4: Half-heusler lattice constant Complicated covalent/ionic bonding Shorter bond lengths
22 Test5: zinc blende delta test Covalent bonding Shorter bond lengths
23 Testing Summary My potentials are good combination: 1) Speed 2) Accuracy 3) Transferability
24 Testing Summary My potentials are good combination: 1) Speed 2) Accuracy 3) Transferability
25 Testing Summary My potentials are good combination: 1) Speed 2) Accuracy 3) Transferability
26 Typical errors summary Expected accuracy For well-designed and efficient potentials In unknown chemical environment half-heusler error distribution 0.15% rms error lattice constant 1-2 mev/atom delta test 5% bulk modulus 90% within +/- 0.2% lattice constant Poorly tested potentials can be very bad. Especially but not exclusively older potentials
27 Designing pseudopotentials
28 Constructing Potentials Things to adjust: -r c -semicore/valence -nlcc, etc Ultrasoft Oxygen Testing is key: -Average psp goes though iterations
29 Start I want a psp Initial psp (similar atom) Guided by: Periodic trends Trial and error Adjust r c s Look at log deriv. Increase r c Remove semicore Solid State Tests Reduce r c Add Semicore Adjust local potential Extra projectors Too Hard Good? Yes! Bad Testing The End
30 Examples from code you will use Optimized norm-conserving Vanderbilt pseudopotentials D. R. Hamann, PRB (2013) Nice new code, much easier than back in my day. Supports multiple projects, optimization.
31 Si input file Atom name, Z 3 Core 2 valence 1s2s2p 3s3p
32 Atomic states: 1s 2 2s 2 2p 6 3s 2 3p 2 Si input file
33 Si input file Maximum angular momentum L=2 means d
34 r c for s,p,d Si input file
35 Si input file q target for s,p,d q 2 / 2 = E cut
36 Si input file
37 Number of projectors Energy of extra projector For s,p,d Si input file
38 Si graphical output v_pseudo
Pseudopotentials: design, testing, typical errors
Pseudopotentials: design, testing, typical errors Kevin F. Garrity National Institute of Standards and Technology (NIST) Uncertainty Quantification in Materials Modeling 2015 Parameter free calculations.
More informationPseudopotentials: design, testing, typical errors
Pseudopotentials: design, testing, typical errors Kevin F. Garrity Part 1 National Institute of Standards and Technology (NIST) Uncertainty Quantification in Materials Modeling 2015 Parameter free calculations.
More informationTheory of Pseudopotentials. Outline of Talk
Theory of Pseudopotentials David Vanderbilt Rutgers University Outline of Talk Introduction Motivation Basic Idea History and Terminology First-Principles Pseudopotentials Construction Scattering Properties
More informationarxiv: v3 [cond-mat.mtrl-sci] 16 Aug 2013
Pseudopotentials for high-throughput DFT calculations Kevin F. Garrity a, Joseph W. Bennett a, Karin M. Rabe a, David Vanderbilt a arxiv:1305.5973v3 [cond-mat.mtrl-sci] 16 Aug 2013 a Department of Physics
More informationPseudopotential methods for DFT calculations
Pseudopotential methods for DFT calculations Lorenzo Paulatto Scuola Internazionale Superiore di Studi Avanzati and CNR-INFM DEMOCRITOS National Simulation Center Tieste Italy July 9, 2008 Outline pseudopotential
More informationDFT in practice : Part II. Ersen Mete
pseudopotentials Department of Physics Balıkesir University, Balıkesir - Turkey August 13, 2009 - NanoDFT 09, İzmir Institute of Technology, İzmir Outline Pseudopotentials Basic Ideas Norm-conserving pseudopotentials
More informationThe Plane-Wave Pseudopotential Method
Hands-on Workshop on Density Functional Theory and Beyond: Computational Materials Science for Real Materials Trieste, August 6-15, 2013 The Plane-Wave Pseudopotential Method Ralph Gebauer ICTP, Trieste
More informationDFT EXERCISES. FELIPE CERVANTES SODI January 2006
DFT EXERCISES FELIPE CERVANTES SODI January 2006 http://www.csanyi.net/wiki/space/dftexercises Dr. Gábor Csányi 1 Hydrogen atom Place a single H atom in the middle of a largish unit cell (start with a
More informationYuan Ping 1,2,3*, Robert J. Nielsen 1,2, William A. Goddard III 1,2*
Supporting Information for the Reaction Mechanism with Free Energy Barriers at Constant Potentials for the Oxygen Evolution Reaction at the IrO2 (110) Surface Yuan Ping 1,2,3*, Robert J. Nielsen 1,2, William
More informationThe Plane-wave Pseudopotential Method
The Plane-wave Pseudopotential Method k(r) = X G c k,g e i(g+k) r Chris J Pickard Electrons in a Solid Nearly Free Electrons Nearly Free Electrons Nearly Free Electrons Electronic Structures Methods Empirical
More informationPatterns, Correlations, and Causality in Big Data of Materials: Analytics for Novel Materials Discovery
Patterns, Correlations, and Causality in Big Data of Materials: Analytics for Novel Materials Discovery From the periodic table of the elements to a chart (a map) of materials: Organize materials according
More informationRustam Z. Khaliullin University of Zürich
Rustam Z. Khaliullin University of Zürich Molecular dynamics (MD) MD is a computational method for simulating time evolution of a collection of interacting atoms by numerically integrating Newton s equation
More informationAn Introduction to OPIUM
An Introduction to OPIUM Andrew M Rappe Makineni Theoretical Laboratories Department of Chemistry University of Pennsylvania & Eric J Walter Center for Piezoelectrics by Design Department of Physics College
More information1. Hydrogen atom in a box
1. Hydrogen atom in a box Recall H atom problem, V(r) = -1/r e r exact answer solved by expanding in Gaussian basis set, had to solve secular matrix involving matrix elements of basis functions place atom
More informationUniform properties throughout! SOLUTE(S) - component(s) of a solution present in small amounts.
54 SOLUTIONS - a SOLUTION is a HOMOGENEOUS MIXTURE. Uniform properties throughout! - parts of a solution: SOLUTE(S) - component(s) of a solution present in small amounts. SOLVENT - the component of a solution
More informationPseudopotentials for hybrid density functionals and SCAN
Pseudopotentials for hybrid density functionals and SCAN Jing Yang, Liang Z. Tan, Julian Gebhardt, and Andrew M. Rappe Department of Chemistry University of Pennsylvania Why do we need pseudopotentials?
More informationPseudo potential exercises
Pseudo potential exercises Johan M. Carlsson Fritz-Haber-Institut der Max-Planck-Gesellschaft D-14195 Berlin Introduction Castep contains an "on the fly" OTF-pseudo potential generator that can be used
More informationPseudopotentials and Basis Sets. How to generate and test them
Pseudopotentials and Basis Sets How to generate and test them Pseudopotential idea Atomic Si Core electrons highly localized very depth energy are chemically inert 1s 2 2s 2 2p 6 3s 2 3p 2 Valence wave
More informationThe Linearized Augmented Planewave (LAPW) Method
The Linearized Augmented Planewave (LAPW) Method David J. Singh Oak Ridge National Laboratory E T [ ]=T s [ ]+E ei [ ]+E H [ ]+E xc [ ]+E ii {T s +V ks [,r]} I (r)= i i (r) Need tools that are reliable
More informationOpen-Source Pseudopotential Interface/Unification Module (OPIUM): The Basic Ins and Outs of Operation
Open-Source Pseudopotential Interface/Unification Module (OPIUM): The Basic Ins and Outs of Operation Irene K. Metz, Joseph W. Bennett and Sara E. Mason (Dated: May 31, 2018) Learning Objectives 1. Determine
More informationProjector augmented wave Implementation
Projector augmented wave Implementation Peter. E. Blöchl Institute for Theoretical Physics Clausthal University of Technology, Germany http://www.pt.tu-clausthal.de/atp/ 1 = Projector augmented wave +
More informationPseudopotentials for high-throughput DFT calculations
Pseudopotentials for high-throughput DFT calculations Kevin F. Garrity, 1, Joseph W. Bennett, 1 Karin M. Rabe, 1 and David Vanderbilt 1 1 Department of Physics & Astronomy, Rutgers University, Piscataway,
More informationLecture on First-principles Computations (14): The Linear Combination of Atomic Orbitals (LCAO) Method
Lecture on First-principles Computations (14): The Linear Combination of Atomic Orbitals (LCAO) Method 任新国 (Xinguo Ren) 中国科学技术大学量子信息重点实验室 Key Laboratory of Quantum Information, USTC Hefei, 2016.11.11 Recall:
More informationElectronic Structure Theory for Periodic Systems: The Concepts. Christian Ratsch
Electronic Structure Theory for Periodic Systems: The Concepts Christian Ratsch Institute for Pure and Applied Mathematics and Department of Mathematics, UCLA Motivation There are 10 20 atoms in 1 mm 3
More informationOutline. Introduction: graphene. Adsorption on graphene: - Chemisorption - Physisorption. Summary
Outline Introduction: graphene Adsorption on graphene: - Chemisorption - Physisorption Summary 1 Electronic band structure: Electronic properties K Γ M v F = 10 6 ms -1 = c/300 massless Dirac particles!
More informationIntroduction to Condensed Matter Physics
Introduction to Condensed Matter Physics Crystalline Solids - Introduction M.P. Vaughan Overview Overview of course Crystal solids Crystal structure Crystal symmetry The reciprocal lattice Band theory
More informationStructure of CoO(001) surface from DFT+U calculations
Structure of CoO(001) surface from DFT+U calculations B. Sitamtze Youmbi and F. Calvayrac Institut des Molécules et Matériaux du Mans (IMMM), UMR CNRS 6283 16 septembre 2013 Introduction Motivation Motivation
More informationThe solid state. Ga Ge As Se Br d 10 4s 2. Sn Xe 1.49 I Sb Te In d 10 5s 2. Pb 0.
Molecular shape The shapes of molecules: van t Hoff (1874): CH 4 tetrahedron Werner (1893): Pt(NH 3 ) 2 Cl 2 planar Lewis (1915): Electron pairs and octets Sidgwick and Powell (1940): Foundations of Valence
More informationHow do Elements Combine to Form Compounds?
How do Elements Combine to Form Compounds? ACTIVITY What is it made of? Compounds account for the huge variety of matter on Earth All the compounds that exist on Earth are built from elements 118 elements
More informationHardness Prediction and First Principle Study of Re-123(Re = Y, Eu, Pr, Gd) Superconductors
316 Bull. Korean Chem. Soc. 29, Vol. 3, No. 12 Weiwei Liu et al. DOI 1.512/bkcs.29.3.12.316 Hardness Prediction and First Principle Study of Re-123(Re = Y, Eu, Pr, Gd Superconductors Weiwei Liu,, Y. P.
More informationPlane waves, pseudopotentials and PAW. X. Gonze Université catholique de Louvain, Louvain-la-neuve, Belgium
Plane waves, pseudopotentials and PAW X. Gonze Université catholique de Louvain, Louvain-la-neuve, Belgium 1 Basic equations in DFT Solve self-consistently the Kohn-Sham equation H ψ n = ε n ψ n!!! ρ(r
More informationUniform properties throughout! SOLUTE(S) - component(s) of a solution present in small amounts.
37 SOLUTIONS - a SOLUTION is a HOMOGENEOUS MIXTURE. Uniform properties throughout! - parts of a solution: SOLUTE(S) - component(s) of a solution present in small amounts. SOLVENT - the component of a solution
More informationHow do Elements Combine to Form Compounds?
How do Elements Combine to Form Compounds? ACTIVITY What is it made of? Think about the calcium atom vs the calcium ion Compounds account for the huge variety of matter on Earth All the compounds that
More informationTable of Contents. Table of Contents Pseudopotentials and basis sets available in QuantumATK
Table of Contents Table of Contents Pseudopotentials and basis sets available in QuantumATK Pseudopotentials Basis sets Accuracy tests for elemental solids Accuracy tests for mixed solids Defect formation
More informationNorm-conserving pseudopotentials and basis sets in electronic structure calculations. Javier Junquera. Universidad de Cantabria
Norm-conserving pseudopotentials and basis sets in electronic structure calculations Javier Junquera Universidad de Cantabria Outline Pseudopotentials Why pseudopotential approach is useful Orthogonalized
More informationMustafa Uludogan 1, Tahir Cagin, William A. Goddard, III Materials and Process Simulation Center, Caltech, Pasadena, CA 91125, U.S.A.
Ab Initio Studies On Phase Behavior of Barium Titanate Mustafa Uludogan 1, Tahir Cagin, William A. Goddard, III Materials and Process Simulation Center, Caltech, Pasadena, CA 91125, U.S.A. 1 Physics Department,
More informationAll-Electron Path Integral Monte Carlo (PIMC) Simulations of Warm Dense Matter: Application to Water and Carbon Plasmas
All-Electron Path Integral Monte Carlo (PIMC) Simulations of Warm Dense Matter: Application to Water and Carbon Plasmas Kevin Driver and Burkhard Militzer Department of Earth and Planetary Science University
More informationUniform properties throughout! SOLUTE(S) - component(s) of a solution present in small amounts.
54 SOLUTIONS - a SOLUTION is a HOMOGENEOUS MIXTURE. Uniform properties throughout! - parts of a solution: SOLUTE(S) - component(s) of a solution present in small amounts. SOLVENT - the component of a solution
More informationA neural network representation of the potential energy surface in Si- and Si-Li systems
A neural network representation of the potential energy surface in Si- and Si-Li systems Brad Malone, Ekin Cubuk, and Efthimios Kaxiras The Problem The detailed simulation of many physical processes can
More informationUnit 1, Lesson 07: Introduction to Covalent Bonding and the Octet Rule
Unit 1, Lesson 07: Introduction to Covalent Bonding and the Octet Rule non-metals (except Noble gases) have high electronegativity and high ionization energy. They have a strong pull on new electrons if
More information[2]... [1]
1 Carbon and silicon are elements in Group IV. Both elements have macromolecular structures. (a) Diamond and graphite are two forms of the element carbon. (i) Explain why diamond is a very hard substance....
More informationAtomic Models for Anionic Ligand Passivation of Cation- Rich Surfaces of IV-VI, II-VI, and III-V Colloidal Quantum Dots
Electronic Supplementary Material (ESI) for ChemComm. This journal is The Royal Society of Chemistry 2016 Electronic Supplementary Information Atomic Models for Anionic Ligand Passivation of Cation- Rich
More informationQuantum anomalous Hall states on decorated magnetic surfaces
Quantum anomalous Hall states on decorated magnetic surfaces David Vanderbilt Rutgers University Kevin Garrity & D.V. Phys. Rev. Lett.110, 116802 (2013) Recently: Topological insulators (TR-invariant)
More informationAtomic orbitals of finite range as basis sets. Javier Junquera
Atomic orbitals of finite range as basis sets Javier Junquera Most important reference followed in this lecture in previous chapters: the many body problem reduced to a problem of independent particles
More informationProjector-Augmented Wave Method:
Projector-Augmented Wave Method: An introduction Peter E. Blöchl Clausthal University of Technology Germany http://www.pt.tu-clausthal.de/atp/ 23. Juli 2003 Why PAW all-electron wave functions (EFG s,
More informationSearching for functional oxides using high-throughput ab initio screening
11 th Korea-US Forum on Nanotechnology Searching for functional oxides using high-throughput ab initio screening Kanghoon Yim, Joohee Lee, Yong Youn, Kyu-hyun Lee, and Seungwu Han Materials Theory and
More informationSupplementary material. From cellulose to kerogen: molecular simulation. of a geological process
Electronic Supplementary Material (ESI) for Chemical Science. This journal is The Royal Society of Chemistry 2017 Supplementary material From cellulose to kerogen: molecular simulation of a geological
More informationThe Nature of the Interlayer Interaction in Bulk. and Few-Layer Phosphorus
Supporting Information for: The Nature of the Interlayer Interaction in Bulk and Few-Layer Phosphorus L. Shulenburger, A.D. Baczewski, Z. Zhu, J. Guan, and D. Tománek, Sandia National Laboratories, Albuquerque,
More informationGBRV phonon update and JTH/PSlibrary testing. Abstract
GBRV phonon update and /PSlibrary testing Kevin F. Garrity National Institute of Standards and Technology, Gaithersburg, MD 20899 (Dated: April 15, 2015) Abstract These notes contain a brief discussion
More informationChapter 6: Chemical Bonding
Chapter 6: Chemical Bonding Learning Objectives Describe the formation of ions by electron loss/gain to obtain the electronic configuration of a noble gas. Describe the formation of ionic bonds between
More informationUniform properties throughout! SOLUTE(S) - component(s) of a solution present in small amounts.
54 SOLUTIONS - a SOLUTION is a HOMOGENEOUS MIXTURE. Uniform properties throughout! - parts of a solution: SOLUTE(S) - component(s) of a solution present in small amounts. SOLVENT - the component of a solution
More informationPractical Guide to Density Functional Theory (DFT)
Practical Guide to Density Functional Theory (DFT) Brad Malone, Sadas Shankar Quick recap of where we left off last time BD Malone, S Shankar Therefore there is a direct one-to-one correspondence between
More informationNCSD HIGH SCHOOL CHEMISTRY SCOPE AND SEQUENCE
UNIT Atomic Structure & Properties Periodic Table Bonding Chemical Reactions Moles / Stoichiometry Acids and Bases 15 Days 11 Days 16 Days 16 Days 26 Days 9 Days S T A N D A R D S H.1P.1 Explain how atomic
More informationof its physical and chemical properties.
8.4 Molecular Shapes VSEPR Model The shape of a molecule determines many of its physical and chemical properties. Molecular l geometry (shape) can be determined with the Valence Shell Electron Pair Repulsion
More informationElements and the Periodic Table
CHAPTER 6 Elements and the Periodic Table 6.2 Properties of Groups of Elements There are millions and millions of different kinds of matter (compounds) composed of the same 92 elements. These elements
More informationTest Set for Materials Science and Engineering
Test Set for Materials Science and Engineering Igor Ying Zhang Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany 2015-07-20 FHI-aims workshop Definition of Test set
More informationequation of state and bulk modulus of AlP, AlAs and AlSb semiconductor compounds
PRAMANA c Indian Academy of Sciences Vol. 64, No. 1 journal of January 2005 physics pp. 153 158 Total energy, equation of state and bulk modulus of AlP, AlAs and AlSb semiconductors A R JIVANI, H J TRIVEDI,
More informationQuantum Monte Carlo Benchmarks Density Functionals: Si Defects
Quantum Monte Carlo Benchmarks Density Functionals: Si Defects K P Driver, W D Parker, R G Hennig, J W Wilkins (OSU) C J Umrigar (Cornell), R Martin, E Batista, B Uberuaga (LANL), J Heyd, G Scuseria (Rice)
More information3D topological insulators and half- Heusler compounds
3D topological insulators and half- Heusler compounds Ram Seshadri Materials Department, and Department of Chemistry and Biochemistry Materials Research Laboratory University of California, Santa Barbara
More informationIonic Bonding. Example: Atomic Radius: Na (r = 0.192nm) Cl (r = 0.099nm) Ionic Radius : Na (r = 0.095nm) Cl (r = 0.181nm)
Ionic Bonding Ion: an atom or molecule that gains or loses electrons (acquires an electrical charge). Atoms form cations (+charge), when they lose electrons, or anions (- charge), when they gain electrons.
More informationName: Date: Period: Study Guide: 8th grade - Chapter 8 Test, Elements and Chemical Bonds
Name: Date: Period: Study Guide: 8th grade - Chapter 8 Test, Elements and Chemical Bonds 1. Water is a covalent bond because. 2. Ionic bonds have the ability to. 3. When atoms gain or lose electrons, an
More informationChemical Bonding: Chemical Formulas OL
Name: Chemical Bonding 5. Chemical Bonding: Chemical Formulas Ionic Bonding Covalent Bonding Electronegativity Shapes of Molecules and Intermolecular Forces Objectives -understand that compounds can be
More informationAE Chemistry Midterm Study Guide
Name Date Define Chemistry AE Chemistry Midterm Study Guide Since chemistry studies matter what is the definition of matter. What is the Law of Conservation of Matter? What is energy, what are the two
More informationarxiv: v2 [cond-mat.mtrl-sci] 1 Oct 2013
Generation of Projector Augmented-Wave atomic data: a 71 elements validated table in the XML format arxiv:1309.7274v2 [cond-mat.mtrl-sci] 1 Oct 2013 François Jollet a, Marc Torrent a, Natalie Holzwarth
More informationChemistry Unit: Chemical Bonding (chapter 7 and 8) Notes
Name: Period: Due Date: 1-18-2019 / 100 Formative pts. Chemistry Unit: Chemical Bonding (chapter 7 and 8) Notes Topic-1: Review: 1. Valence electrons: The electrons in the outermost of an atom Valence
More informationOn-the-fly pseudopotential generation in CASTEP
On-the-fly pseudopotential generation in CASTEP Chris J. Pickard School of Physics and Astronomy, University of St Andrews St Andrews, KY16 9SS, United Kingdom September 13, 2006 A quick tutorial Default
More informationChemical bonding in solids from ab-initio Calculations
Chemical bonding in solids from ab-initio Calculations 1 Prof.P. Ravindran, Department of Physics, Central University of Tamil Nadu, India & Center for Materials Science and Nanotechnology, University
More information084f39de - Page 1. Name: 1) An example of a binary compound is A) potassium chlorate B) potassium chloride C) ammonium chloride D) ammonium chlorate
Name: 1) An example of a binary compound is A) potassium chlorate B) potassium chloride C) ammonium chloride D) ammonium chlorate 2) What is the chemical formula for nitrogen (I) oxide? NO 3) What is the
More informationBasis sets for SIESTA. Emilio Artacho. Nanogune, Ikerbasque & DIPC, San Sebastian, Spain Cavendish Laboratory, University of Cambridge
Basis sets for SIESTA Emilio Artacho Nanogune, Ikerbasque & DIPC, San Sebastian, Spain Cavendish Laboratory, University of Cambridge Solving: Basis set Expand in terms of a finite set of basis functions
More informationAIM: HOW TO FORM COVALENT BONDS
AIM: HOW TO FORM COVALENT BONDS DO NOW: EXPLAIN THE DIFFERENCE BETWEEN IONIC BONDING AND COVALENT BONDS. INCLUDE HOW THE PROPERTIES DIFFER IN SALTS AND MOLECULES, AND WHICH ELEMENTS ARE INVOLVED IN EACH
More informationReal and virtual screening for materials discovery through first principles calculations
Real and virtual screening for materials discovery through first principles calculations Isao Tanaka 1,2,3,4 1 Department of Materials Science and Engineering, Kyoto University, JAPAN 2 Elements Strategy
More informationCovalent Bonding H 2. Using Lewis-dot models, show how H2O molecules are covalently bonded in the box below.
Covalent Bonding COVALENT BONDS occur when atoms electrons. When atoms combine through the sharing of electrons, are formed. What is a common example of a covalently bonded molecule? When hydrogen atoms
More informationMODULE 2: QUANTUM MECHANICS. Practice: Quantum ESPRESSO
MODULE 2: QUANTUM MECHANICS Practice: Quantum ESPRESSO I. What is Quantum ESPRESSO? 2 DFT software PW-DFT, PP, US-PP, PAW http://www.quantum-espresso.org FREE PW-DFT, PP, PAW http://www.abinit.org FREE
More informationPotentials, periodicity
Potentials, periodicity Lecture 2 1/23/18 1 Survey responses 2 Topic requests DFT (10), Molecular dynamics (7), Monte Carlo (5) Machine Learning (4), High-throughput, Databases (4) NEB, phonons, Non-equilibrium
More informationSimulations of Li ion diffusion in the electrolyte material Li 3 PO 4
Simulations of Li ion diffusion in the electrolyte material Li 3 PO 4 a, b N. A. W. Holzwarth Wake Forest University, Winston-Salem, NC, USA Motivation Calculational methods Diffusion in crystalline material
More informationSTRUCTURAL AND MECHANICAL PROPERTIES OF AMORPHOUS SILICON: AB-INITIO AND CLASSICAL MOLECULAR DYNAMICS STUDY
STRUCTURAL AND MECHANICAL PROPERTIES OF AMORPHOUS SILICON: AB-INITIO AND CLASSICAL MOLECULAR DYNAMICS STUDY S. Hara, T. Kumagai, S. Izumi and S. Sakai Department of mechanical engineering, University of
More informationAll elements what to be STABLE (full or empty like the noble gases of group 18.) All except H and He want 8 valence electrons (Stable Octet!
SCIENCE FOUNDATIONS Chemical Bonds Remember from last chapter the number of VALENCE ELECTRONS (electrons in the outermost energy level) and OXIDATION NUMBER (ion each element becomes to get full or empty)
More information1 Construction of norm-conserving semi-local pseudopotentials for Si
1 Construction of norm-conserving semi-local pseudopotentials for Si As discussed in class, it is desirable to replace the effective interaction of the valence electrons with the ionic core, i.e. nucleus
More informationGroup 13: B, Al, Ga, In, Tl
Group 13: B, Al, Ga, In, Tl Much higher electronegativity than groups 1, 2, since one more proton in nucleus. Top member is unique: Boron, non-metal heavier members metals (valence e-s further from nucleus,
More informationUnique phenomena of tungsten associated with fusion reactor: uncertainties of stable hydrogen configuration tapped in tungsten vacancy
Unique phenomena of tungsten associated with fusion reactor: uncertainties of stable hydrogen configuration tapped in tungsten vacancy Kyushu University Kazuhito Ohsawa Technical Meeting of the International
More information362 Lecture 6 and 7. Spring 2017 Monday, Jan 30
362 Lecture 6 and 7 Spring 2017 Monday, Jan 30 Quantum Numbers n is the principal quantum number, indicates the size of the orbital, has all positive integer values of 1 to (infinity) l is the angular
More informationReactions continued. And chemical review!!
Reactions continued And chemical review!! Steps to find grams in chemical reaction Balance the equation to get molar ratios Find molar mass of the substances in question Find moles of the one given in
More informationSection 8.1 The Covalent Bond
Section 8.1 The Covalent Bond Apply the octet rule to atoms that form covalent bonds. Describe the formation of single, double, and triple covalent bonds. Contrast sigma and pi bonds. Relate the strength
More informationComputational Modeling Software and their applications
Computational Modeling Software and their applications June 21, 2011 Damilola Daramola Center for Electrochemical Engineering Research ABC s of electrochemistry Introduction Computational Modeling the
More informationProportions to find moles Correctly organized Example. Problem
Reactions continued And chemical review!! Steps to find grams in chemical Balance the equation to get molar ratios Find molar mass of the substances in question Find moles of the one given in grams Set
More informationFollowed by metals and inert gases - close-packed structures Deviations: BCC metals 'Ionic' compounds strive to follow the principles.
Reading: West 7 &8 Principles of Laves 1.Space Principle: Space is used most efficiently 2.Symmetry Principle: Highest possible symmetry is adopted 3.Connection Principle: There will be the most possible
More informationHomogeneous Electric and Magnetic Fields in Periodic Systems
Electric and Magnetic Fields in Periodic Systems Josef W. idepartment of Chemistry and Institute for Research in Materials Dalhousie University Halifax, Nova Scotia June 2012 1/24 Acknowledgments NSERC,
More informationMethod development at SUNCAT in general
Bayesian error estimation functionals and further method development at SUNCAT GPAW 2016 University of Jyväskylä June 8th, 2016 Johannes Voss vossj@stanford.edu Method development at SUNCAT in general
More informationS.No. Crystalline Solids Amorphous solids 1 Regular internal arrangement of irregular internal arrangement of particles
Classification of solids: Crystalline and Amorphous solids: S.No. Crystalline Solids Amorphous solids 1 Regular internal arrangement of irregular internal arrangement of particles particles 2 Sharp melting
More information6. Computational Design of Energy-related Materials
6. Computational Design of Energy-related Materials Contents 6.1 Atomistic Simulation Methods for Energy Materials 6.2 ab initio design of photovoltaic materials 6.3 Solid Ion Conductors for Fuel Cells
More informationCalculation and Analysis of the Dielectric Functions for BaTiO 3, PbTiO 3, and PbZrO 3
CHINESE JOURNAL OF PHYSICS VOL. 1, NO. 3 June 213 Calculation and Analysis of the Dielectric Functions for BaTiO 3, PbTiO 3, and PbZrO 3 Chao Zhang and Dashu Yu School of Physics & Electronic Information
More informationPart I. Multiple choice. Circle the correct answer for each problem. 3 points each
CEM 100 Name Exam 1 Summer 2010 Part I. Multiple choice. Circle the correct answer for each problem. 3 points each 1. The observation that 20 g of hydrogen gas always combines with 160 g of oxygen gas
More informationDefects in TiO 2 Crystals
, March 13-15, 2013, Hong Kong Defects in TiO 2 Crystals Richard Rivera, Arvids Stashans 1 Abstract-TiO 2 crystals, anatase and rutile, have been studied using Density Functional Theory (DFT) and the Generalized
More information9.The Periodic Table. The periodic table is a way of organising all of the elements in the universe. It gives us the following information:
9.The Periodic Table The periodic table is a way of organising all of the elements in the universe. It gives us the following information: Periods Groups Electrons and Valency Metal and Non-Metals Read
More informationTeoría del Funcional de la Densidad (Density Functional Theory)
Teoría del Funcional de la Densidad (Density Functional Theory) Motivation: limitations of the standard approach based on the wave function. The electronic density n(r) as the key variable: Functionals
More informationFacet engineered Ag 3 PO 4 for efficient water photooxidation
Supporting Information Facet engineered Ag 3 PO 4 for efficient water photooxidation David James Martin, Naoto Umezawa, Xiaowei Chen, Jinhua Ye and Junwang Tang* This file includes the following experimental/theoretical
More informationRemember the purpose of this reading assignment is to prepare you for class. Reading for familiarity not mastery is expected.
Remember the purpose of this reading assignment is to prepare you for class. Reading for familiarity not mastery is expected. After completing this reading assignment and reviewing the intro video you
More informationFirst-principles study of BiScO 3 1Àx - PbTiO 3 x piezoelectric alloys
First-principles study of BiScO 3 1Àx - PbTiO 3 x piezoelectric alloys Jorge Íñiguez, 1, * David Vanderbilt, 1 and L. Bellaiche 2 1 Department of Physics and Astronomy, Rutgers University, Piscataway,
More informationChapter 1 Chemical Bonding
Chapter 1 Chemical Bonding 1.1 Atoms, Electrons, and Orbitals Atoms are composed of + Protons positively charged mass = 1.6726 X 10-27 kg Neutrons neutral mass = 1.6750 X 10-27 kg Electrons negatively
More informationGeneration of Thermal Scattering Laws for YH 2 using Ab Initio Methods
Generation of Thermal Scattering Laws for YH 2 using Ab Initio Methods Michael L. Zerkle Bettis Atomic Power Laboratory WPEC SG42 Meeting May 18, 2015 May 18-19, 2015 WPEC SG42 Slide 1 Outline Motivation
More information