Potentiometric Titration of an Amino Acid. Introduction

Similar documents
Proteins: Characteristics and Properties of Amino Acids

A. Two of the common amino acids are analyzed. Amino acid X and amino acid Y both have an isoionic point in the range of

Amino Acids and Peptides

Content : Properties of amino acids.. Separation and Analysis of Amino Acids

Solutions In each case, the chirality center has the R configuration

Lab 3: The titration of amino acids

Chemistry Chapter 22

EXAM 1 Fall 2009 BCHS3304, SECTION # 21734, GENERAL BIOCHEMISTRY I Dr. Glen B Legge

CHMI 2227 EL. Biochemistry I. Test January Prof : Eric R. Gauthier, Ph.D.

INTRODUCTION. Amino acids occurring in nature have the general structure shown below:

Chemical Properties of Amino Acids

A Plausible Model Correlates Prebiotic Peptide Synthesis with. Primordial Genetic Code

1. Amino Acids and Peptides Structures and Properties

Content : Properties of amino acids.. Separation and Analysis of Amino Acids

Read more about Pauling and more scientists at: Profiles in Science, The National Library of Medicine, profiles.nlm.nih.gov

Exam III. Please read through each question carefully, and make sure you provide all of the requested information.

Studies Leading to the Development of a Highly Selective. Colorimetric and Fluorescent Chemosensor for Lysine

المرحلة الثانية- قسم علوم الحياة الجامعة المستنصرية

Properties of amino acids in proteins

Biochemistry Quiz Review 1I. 1. Of the 20 standard amino acids, only is not optically active. The reason is that its side chain.

Protein Structure Bioinformatics Introduction

CHEM J-9 June 2014

Lecture'18:'April'2,'2013

Using Higher Calculus to Study Biologically Important Molecules Julie C. Mitchell

Protein structure. Protein structure. Amino acid residue. Cell communication channel. Bioinformatics Methods

Titration curve of amino acids. BCH 312 [Practical]

Viewing and Analyzing Proteins, Ligands and their Complexes 2

CHEMISTRY ATAR COURSE DATA BOOKLET

As always, start with a fresh right-hand page, and write the title and purpose of lab 3. Include also your name, your lab partner s name and the date.

Chem(Bio) Week 6 Expt F: Amino Acid pka from potentiometry. Identification of an Amino Acid through Potentiometric Titration

Lecture 15: Realities of Genome Assembly Protein Sequencing

Exam I Answer Key: Summer 2006, Semester C

7.05 Spring 2004 February 27, Recitation #2

BENG 183 Trey Ideker. Protein Sequencing

Translation. A ribosome, mrna, and trna.

Practice Midterm Exam 200 points total 75 minutes Multiple Choice (3 pts each 30 pts total) Mark your answers in the space to the left:

Properties of Amino Acids

PROTEIN STRUCTURE AMINO ACIDS H R. Zwitterion (dipolar ion) CO 2 H. PEPTIDES Formal reactions showing formation of peptide bond by dehydration:

Periodic Table. 8/3/2006 MEDC 501 Fall

Principles of Biochemistry

Biochemistry. Biochemical Techniques. 01 Electrophoresis : Basic Concepts

Chapter 3 - Amino Acids

Biochemistry by Mary K. Campbell & Shawn O. Farrell 8th. Ed. 2016

Molecular Selective Binding of Basic Amino Acids by a Water-soluble Pillar[5]arene

SEQUENCE ALIGNMENT BACKGROUND: BIOINFORMATICS. Prokaryotes and Eukaryotes. DNA and RNA

BI/CH421 Biochemistry I Exam 1 09/29/2014

UNIT TWELVE. a, I _,o "' I I I. I I.P. l'o. H-c-c. I ~o I ~ I / H HI oh H...- I II I II 'oh. HO\HO~ I "-oh

Objectives To prepare a dilute solution of a weak acid. To prepare a buffer of a specific ph value.

Collision Cross Section: Ideal elastic hard sphere collision:

Partner: Alisa 1 March Preparation and Properties of Buffer Solutions

1-How can we distinguish between D-amino acid and L-amino acid?

Lecture 14 - Cells. Astronomy Winter Lecture 14 Cells: The Building Blocks of Life

NAME. EXAM I I. / 36 September 25, 2000 Biochemistry I II. / 26 BICH421/621 III. / 38 TOTAL /100

LS1a Fall 2014 Problem Set #2 Due Monday 10/6 at 6 pm in the drop boxes on the Science Center 2 nd Floor

ADSORPTION OF TWENTY BIO-AMINO ACIDS BY NATURAL ALLOPHANE AND IMOGOLITE

A) at equilibrium B) endergonic C) endothermic D) exergonic E) exothermic.

H + [ ] [ ] H + NH 3 NH 4. = poh + log HB +

Dental Biochemistry EXAM I

Determination of the K a Value and Molar Mass of an Unknown Weak Acid

BCH 4053 Exam I Review Spring 2017

PROTEIN SECONDARY STRUCTURE PREDICTION: AN APPLICATION OF CHOU-FASMAN ALGORITHM IN A HYPOTHETICAL PROTEIN OF SARS VIRUS

Protein Struktur (optional, flexible)

Problem Set 1

ph Measurement and its Applications

Section Week 3. Junaid Malek, M.D.

Chapter 4: Amino Acids

EXPERIMENT 5 ACID-BASE TITRATION

THE UNIVERSITY OF MANITOBA. PAPER NO: _1_ LOCATION: 173 Robert Schultz Theatre PAGE NO: 1 of 5 DEPARTMENT & COURSE NO: CHEM / MBIO 2770 TIME: 1 HOUR

In this laboratory exercise we will determine the percentage Acetic Acid (CH 3 CO 2 H) in Vinegar.

BIS Office Hours

12/6/12. Dr. Sanjeeva Srivastava IIT Bombay. Primary Structure. Secondary Structure. Tertiary Structure. Quaternary Structure.

Basic Principles of Protein Structures

Dental Biochemistry Exam The total number of unique tripeptides that can be produced using all of the common 20 amino acids is

Protein Struktur. Biologen und Chemiker dürfen mit Handys spielen (leise) go home, go to sleep. wake up at slide 39

ph Titration Curves You will need about 10 ml of ~6M NaOH solution and about 40 ml of each acid solution and about 1.5 grams of KHP.

CHM 152 updated May 2011 Lab 8: Titration curve of a Weak Acid

+ H 2 O Equation 1. + NaOH CO 2 Na

C CH 3 N C COOH. Write the structural formulas of all of the dipeptides that they could form with each other.

Range of Certified Values in Reference Materials. Range of Expanded Uncertainties as Disseminated. NMI Service

NH 2. Biochemistry I, Fall Term Sept 9, Lecture 5: Amino Acids & Peptides Assigned reading in Campbell: Chapter

Experiment #7. Titration of Vinegar

Protein Structure Marianne Øksnes Dalheim, PhD candidate Biopolymers, TBT4135, Autumn 2013

Using an Artificial Regulatory Network to Investigate Neural Computation

Next Step MCAT Super Review: Amino Acids

Near UV-Visible Electronic Absorption Originating from Charged

Separation of Large and Small Peptides by Supercritical Fluid Chromatography and Detection by Mass Spectrometry

Chapter 16: Applications of Aqueous Equilibrium Part 2. Acid-Base Titrations

O H 3 O 1 1 A. O 1 1 OH (K w

#13 ph-titration of Weak Acids with Strong Bases

Experiment 7: ACID-BASE TITRATION: STANDARDIZATION OF A SOLUTION

Chemistry 151 Last Updated Dec Lab 10: The Neutralizing Ability of an Antacid (Titrations, Pt II)

Background BIOCHEMISTRY LAB CHE-554. Experiment #1 Spectrophotometry

BSc and MSc Degree Examinations

Basic equations: effect of ph. Analyzing the ph dependence of enzymatic reactions may be useful: To understand the enzyme s function in the organism

Proteins and Amino Acids in Fine Particulate Matter in Rural. Guangzhou, Southern China: Seasonal Cycles, Sources, and. Atmospheric Processes

Water. Water participates in H-bonding with biomolecules.

Chemical Reactions: Titrations

QUESTION 1 Which two functional groups react to form the peptide link found in proteins?

CHAPTER 29 HW: AMINO ACIDS + PROTEINS

Understanding the shapes of acid-base titration curves AP Chemistry

Transcription:

NAME: Course: DATE Sign-Off: Performed: Potentiometric Titration of an Amino Acid Introduction In previous course-work, you explored the potentiometric titration of a weak acid (HOAc). In this experiment, you will explore the titration of an amino acid. The information you will obtain from this experiment will demonstrate the acidity of the carboxyl group (COOH), the alkalinity of the amino group (-NH 2 ) and the acid-base characteristics of the R-group -- if any on the amino acid, at all. Remember from lecture that amino acids under physiological conditions undergo double ionization and are called "zwitterions" -- twin ions. This term comes about from the deprotonation of the carboxyl group to the carboxylate ion (COO - ) and the protonation of the amino group to the ammonium ion (-NH 3 + ). R-groups, such as the imidazole ring, carboxyl group, amino group, guanidino group, will protonate or deprotonate depending upon their chemical characteristics and the of the solution in which they are solvated. The table, below, lists the pk values for some of the amino acids and the isoelectric point for these amino acids, as well: Name of Amino Acid pk COOH pk NH2 pk R pi Alanine (ala) 2.34 9.69 6.02 Arginine (arg) 2.17 9.04 12.48 10.76 Aspartic acid (asp) 2.09 9.82 3.86 2.98 Cysteine (cys) 1.71 10.78 8.33 9.56 Glutamic acid (glu) 2.19 9.67 4.25 3.22 Glycine (gly) 2.34 9.6 5.97 Histidine (his) 1.82 9.17 6.0 7.59 Isoleucine (ile) 2.32 9.75 6.04 Leucine (leu) 2.36 9.60 5.98 Lysine (lys) 2.18 8.95 10.53 9.74 Methionine (met) 2.20 9.05 5.63 Serine (ser) 2.21 9.15 5.68 Threonine (thr) 2.63 10.43 6.53 Tryptophan (trp) 2.35 9.33 5.84 Tyrosine (tyr) 2.20 9.11 10.07 9.59 Valine (val) 2.29 9.72 6.01 1

Remember that the calculation of the pi is to take the sum of the 2 closest pk values and divide them by 2. This is the point at which the amino acid is electrically neutral. There are some caveats to remember when titrating an amino acid: while this is an accepted technique among some analytical chemists, among biochemists it's not believed to be as accurate as something like HPLC or 2-D paper chromatography for amino acid identification. It is also important to remember that pk's within about 2 pk units will probably NOT be detected by this method, e.g., the 2 carboxyl groups on asp or glu or the 2 amines on lys may not be picked up. The purpose of this lab is for the student to observe the amphiprotic characteristics of amino acids and use a pre-fabb d Excel spreadsheet to demonstrate the zwitterionic characteristics of an amino acid. The techniques for determining the titration and first derivative curve are as per the potentiometric titration of a weak acid experiment that you performed in previous courses, i.e., carry that knowledge into this experiment. Materials and Methods Chemicals Equipment 1 M HCl Weighing boats 0.1 N NaOH Spatula Amino acid (assigned to each student) 4 and 7 buffers 1-calibrated Checker Electronic pan balance Buret and clamp Ring stand 2-125 ml Erlenmeyer flasks Method Mass out 2 samples of your amino acid such that they are not more than 0.1000 g, apiece. Record the amino acid and the masses in the table, below: Name of Amino Acid: Sample #1 mass (g) Sample #2 mass (g) Pour each sample into each of the pre-labeled Erlenmeyer flasks and dissolve the amino acid in about 25 ml of water. Obtain your checker and turn it on. Insert it into the amino acid solution and allow it to stabilize. Once it has stabilized, add enough 1 M HCl to it to adjust the of the solution to a of about 1 to 1.5. Record that and the volume of HCl added to get to that in the box below: Sample 1 after ml HCl added Sample 2 after ml HCl added = = Obtain your buret and titrating supplies. Clean and prepare the buret as in the past, remembering to put the 0.1 N NaOH in the buret. Remember, too, to read your buret from top down. Once you have this assembled, you are ready to begin titrating your sample. Read the following table carefully and record your readings at the volumes indicated. Note that this is very painstaking ands that readings are characteristically taken after the addition of every 0.5 ml 0.1 N NaOH. This is necessary for good first (and sometimes, second) derivative curves. You will perform this titration in duplicate. 2

TRIAL 1 0.0 15.0 30.0 0.5 15.5 30.5 1.0 16.0 31.0 1.5 16.5 31.5 2.0 17.0 32.0 2.5 17.5 32.5 3.0 18.0 33.0 3.5 18.5 33.5 4.0 19.0 34.0 4.5 19.5 34.5 5.0 20.0 35.0 5.5 20.5 35.5 6.0 21.0 36.0 6.5 21.5 36.5 7.0 22.0 37.0 7.5 22.5 37.5 8.0 23.0 38.0 8.5 23.5 38.5 9.0 24.0 39.0 9.5 24.5 39.5 10.0 25.0 40.0 10.5 25.5 40.5 11.0 26.0 41.0 11.5 26.5 41.5 12.0 27.0 42.0 12.5 27.5 42.5 13.0 28.0 43.0 13.5 28.5 43.5 14.0 29.0 44.0 14.5 29.5 44.5 3

TRIAL 2 0.0 15.0 30.0 0.5 15.5 30.5 1.0 16.0 31.0 1.5 16.5 31.5 2.0 17.0 32.0 2.5 17.5 32.5 3.0 18.0 33.0 3.5 18.5 33.5 4.0 19.0 34.0 4.5 19.5 34.5 5.0 20.0 35.0 5.5 20.5 35.5 6.0 21.0 36.0 6.5 21.5 36.5 7.0 22.0 37.0 7.5 22.5 37.5 8.0 23.0 38.0 8.5 23.5 38.5 9.0 24.0 39.0 9.5 24.5 39.5 10.0 25.0 40.0 10.5 25.5 40.5 11.0 26.0 41.0 11.5 26.5 41.5 12.0 27.0 42.0 12.5 27.5 42.5 13.0 28.0 43.0 13.5 28.5 43.5 14.0 29.0 44.0 14.5 29.5 44.5 4

Calculations Once you have completed your work and disposed of your waste as instructed, set up the titration curves and first-derivative curves as in the previous lab. To refresh your memory, here are two titration curves performed by former students usiong your equipment: Figure 1. Potentiometric titration of histidine. Figure 2. Potentiometric titration of a dicarboxylic amino acid. Note the closeness of the two endpoints in Figure 2. Be very observant as you do your analyses. To determine the pk COOH and pk NH2 of your amino acid, do the following: For pk COOH : find the first endpoint volume (from your first derivative curve) and divide that in half. Back determine the at that new (half) volume from your titration curve. Record both experimental pk COOH 's here: Sample 1 pk COOH Sample 2 pk COOH 5

For pk NH2 : find the first and second endpoint volumes from your first derivative curve. Find the halfway volume between the two. Back determine the pk NH2 at that volume from your titration curve. Record both experimental pk NH2 's here: Sample 1 pk NH2 Sample 2 pk NH2 Compare your values with those from the table of pk values at the beginning of the experiment: KNOWN Values Average Experimentally Determined pk COOH pk NH2 Questions You have plenty to do without the added aggravation of questions. Attach your graphs to the lab for turn-in. Sources Harris: Exploring Chemical Analysis, Second Edition. (W.H. Freeman and Co.: NY) 2001. Lehninger: Principles of Biochemistry. (Worth Publishers: NY, NY) 1982. This page built 10 August 2008, 1635 hours, PDT. 6