QTRAP and SelexION+- Improving the Sensitivity, Speed and Selectivity in Food, Clinical Research and Pharmaceutical Applications

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QTRAP 6500+ and SelexION+- Improving the Sensitivity, Speed and Selectivity in Food, Clinical Research and Pharmaceutical Applications Jianru Stahl-Zeng. Ph D Darmstadt, Germany

Agenda 6500 + LC/MS System Hardware Improvements 6500 + LC/MS System Features and Application Benefits Application Data Examples 2 2015 AB Sciex

The New SCIEX 6500 + Series with HED + Detector Technology Industry proven performance: IonDrive Turbo V ion source and QJet ion guide New -Sensitivity boost with new HED + detector technology in negative mode New -Enhanced SelexION performance with new jet injector DMS cell without compromising resolution New -Fast polarity switching speed (5 msec) New -Audible noise reduction 3 2015 AB Sciex

New Feature Benefit Application New HED + detector technology New jet injector DMS cell Neg Mode: Significant improvement in signal intensity Q3 fragment mass < 100 Da Increased transmission efficiency (up to 2X increase in signal intensity) Oligonucleotide quant in neg. mode with low mass Q3 fragments; Low M.Wt. biomarkers Compounds with poor MS/MS or non specific fragments- Steroids, Cyclic peptides Reduce matrix background & chemical interference Fast polarity switching speed 4 2015 AB Sciex As low as 5 msec Biomarker discovery and multi target quant with smrm pro algorithm

Technology Improvements

HED + Detector Technology Larger detection area New power supply High energy dynode at 15 kv improves sensitivity Enables faster polarity switching Floated design Ions in negative polarity directed straight into the detector This benefits low mass ions which are detected much more efficiently Contributes to significant signal gains in neg. mode Q3 fragment <100 Da and modest improvements in pos. mode 6 2015 AB Sciex

Sensitivity of 6500 + System in Positive Polarity 0.1 pg/ml Testosterone (with SelexION + Technology, 50 µl Injection) 7 2015 AB Sciex

Linearity of 6500 + System in Positive Polarity 0.1 to 100 pg/ml Testosterone (with SelexION + Technology) 0.1 to 5 pg/ml Accuracies: 92 to 109% %CV: 3.8% at 0.1 pg/ml 8 2015 AB Sciex

Linearity of 6500 + System in Positive Polarity 1 to 100,000 pg/ml Flurazepam (with SelexION + Technology) 1 to 1000 pg/ml 5 orders r > 0.9999 9 2015 AB Sciex

HED + Detector Technology in Negative Mode Capture more negative ions and increase ion conversion 6500 + In 6500 + negative ion mode, the ions are directed straight into the detector -500 V Use HED + to deflect the negative ions to the detector +5500 V Increase overall detector voltage to pull in negative ions +7000 V Larger detection area helps to capture wide spread of ions 10 2015 AB Sciex

Sensitivity of 6500 + System in Negative Polarity 1 ng/l (1 part-per-trillion) PFOA and PFOS (Linearity 0.5 to 5000 ng/l) PFOA 413/369 413/169 413/219 Quantifier (blue) Qualifier 1 (purple) Qualifier 2 (orange) PFOS 499/80 499/99 Quantifier (blue) Qualifier 1 (purple) 12 2015 AB Sciex

Sensitivity of 6500 + System in Negative Polarity 0.1 ng/ml (100 ppt) Monofluoroacetate (Linearity 0.05 1000 ng/ml) 77/57 (blue) 77/33 (purple) Internal standard 81/60 (blue) 81/35 (purple) Accuracies: 96.1 to 110.9% %CV: 4.99% at 0.1 pg/ml (n = 10) 14 2015 AB Sciex

Ultra Fast Polarity Switching of 6500 + System Multi-Pesticide Screening for ~300 Analytes with 5 msec Switching 552 MRM transitions Positive ESI Flufenacet CV = 4.37% Methoxyfenozide CV = 1.52% 58 MRM transitions Negative ESI 15 2015 AB Sciex

Multi-Pesticide Screening with 5 msec Polarity Switching Pesticide Standard and Sample Extracts (Positive Polarity) 1 ng/ml Tomato (10x) Cucumber (10x) Banana (10x) Strawberry (10x) Lemon (10x) Arugula (20x) 16 2015 AB Sciex

Multi-Pesticide Screening with 5 msec Polarity Switching Pesticide Standard and Sample Extracts (Negative Polarity) 1 ng/ml Tomato (10x) Cucumber (10x) Banana (10x) Strawberry (10x) Lemon (10x) Arugula (10x) 17 2015 AB Sciex

New Jet Injector SelexION + Technology

Lens Lens New Jet Injector SelexION + Technology New DMS Cell Design Increase ion transmission by 2X Additional lens increases ion velocities into the cell Reduces transit time through detrimental fringing field Only available on 6500 + Platform DMS Electrode 1 DMS Electrode 2 DMS Electrode 1 Continually driving selectivity improvements DMS Electrode 2 19 2015 AB Sciex

Alprazolam Buprenorphine Clenbuterol Methamphetamine Alprazolam Buprenorphine Clenbuterol Methamphetamine Alprazolam Buprenorphine Clenbuterol Methamphetamine Rel. Peak Area Rel. Peak Area Rel. Peak Area SelexION + Performance Improvements 2X Increase in transmission efficiency with new jet injector 20 18 16 14 12 10 8 6 4 2 0 Resolution Gas = Low SelexION SelexION+ 30 25 20 15 10 5 0 Resolution Gas = Off SelexION SelexION+ 60 50 40 30 20 10 0 Resolution Gas = Open SelexION SelexION+ 20 2015 AB Sciex ~ 2X increase in signal intensity in all DMS resolution settings

Cyclic Peptides & Peptides with Poor MS/MS Fragmentation Poor MS/MS-cyclic peptide Non specific product ions- low mass Q3 fragments Somatostatin Cyclic Peptide C76H104N18O19S2 1636.7Da +2 charge- m/z 819.7 21 2015 AB Sciex

Somatostatin Product Ion Spectrum Product of Q1 819.7 Da Poor MS/MS-cyclic peptide Non specific product ions- low mass Q3 fragments Best approach parent to parent quantification but limited by huge background noise 22 2015 AB Sciex

SelexION + Multiple Ion Monitoring (MIM) Assay Interferences Parent No fragmentation in collision cell Parent Interferences SelexION + Technology Parent Ion Transmission Parent Ion Transmission Reduce Background Noise Eliminate interferences and achieve cleaner background with SelexION + MIM Assay 23 2015 AB Sciex

6500 + SelexION + MIM Assay-Somatostatin Cyclic Peptide Quant A) Blank Plasma-With SelexION + in MIM B) Blank Plasma-Without SelexION + in MIM Mode Mode MIM- 819.7/819.7 MIM- 819.7/819.7 Low background noise with SelexION + High background noise without SelexION + Approx. 10X reduction in background noise with SelexION + MIM Assay 24 2015 AB Sciex

6500 + SelexION + Somatostatin Cyclic Peptide Quant Data A) Blank Plasma-Somatostatin DMS MIM B) 50 pg/ml LOQ in Rat Plasma-Somatostatin DMS MIM S/N 9.6 Accuracy 102.7% % CV 5.8 No. Inj. 5 MIM- 819.7/819.7 MIM- 819.7/819.7 25 2015 AB Sciex

6500 + SelexION + Somatostatin Cyclic Peptide Quant Data Somatostatin SelexION + MIM Assay in Rat Plasma A) Calibration Curve: 0.05 ng/ml-2500 ng/ml R= 0.9934 B) GLP Level accuracy: 88.9%-110.2%; Precision: <9% 26 2015 AB Sciex

6500+ SelexION + Robustness Data in Crashed Plasma: 4000 Injections Repeatability of 4000 injections (crashed human plasma (1:3) diluted 1:2) 3.00 Methamphetamine 2.7 %CV Clenbuterol 2.8 %CV Peak Area Ratio 2.50 Alprazolam 3.5% CV Buprenorphine 7.8 %CV 2.00 1.50 1.00 0.50 0.00 0 27 2015 AB Sciex 500 1000 1500 2000 2500 Number of Injections 3000 3500 4000

6500 + SelexION + Robustness Data in Crashed Plasma: 4000 Injections 1 st Injection 1000 th Injection 2000 th Injection 3000 th Injection 4000 th Injection Buprenorphine - % CV- 7.8 Clenbuterol- %CV-2.8 Proven Performance for Robust and Rugged Bioanalytical Assays 28 2015 AB Sciex

Detection of Somatostatin with and without SelexION + 6500 + with DMS 6500 + DMS removed 100 pg/ml Somatostatin, a cyclic peptide with poor MS/MS fragmentation is acquired using MIM (819.7/ 819.7) assay in rat plasma showing high background noise limiting the S/N ratio and LOQ Highly reduced background noise enabling desirable LOQ of 100 pg/ml using new SelexION + jet injector on 6500 + System (S/N ratio = 12, accuracy = 101% and %CV < 10% ) 29 2015 AB Sciex

Audible Noise Reduction Active (source exhaust modifications) Source exhaust flow minimized to match gas load Passive (quieter tubing) Eliminate whistling noise Quieter system operation Noticeable under most source conditions No impact on sensitivity Decreased audible noise for a more comfortable work environment 30 2015 AB Sciex

The New SCIEX 6500 + Series with HED + Detector Technology Industry proven performance: IonDrive Turbo V ion source and QJet ion guide Sensitivity boost with new HED + detector technology Enhanced SelexION performance with new jet injector DMS cell without compromising resolution Fast polarity switching speed (5 msec) Audible noise reduction 31 2015 AB Sciex

Acknowledgements Sylvie Beaudet Tom Biesenthal Bruce Collings Bradley Schneider Andre Schreiber Michael Jarvis Shaw Xia Elliot Jones Steve Taylor Heather Hughes Tony Romanelli Kelli Jonakin Tanya Gamble Gary Impey 32 2015 AB Sciex

Trademarks/Licensing For Research Use Only. Not for use in diagnostic procedures. 2015 AB Sciex. The trademarks mentioned herein are the property of AB Sciex Pte. Ltd. or their respective owners. AB SCIEX is being used under license. 33 2015 AB Sciex