Linking electronic and molecular structure: Insight into aqueous chloride solvation. Supplementary Information

Similar documents
Supporting Information

Electronic Supplementary Information

A. MP2 - Inclusion of counterpoise in the optimisation step

Modeling Ultrafast Deactivation in Oligothiophenes via Nonadiabatic Dynamics

List of Figures Page Figure No. Figure Caption No. Figure 1.1.

Supporting Information for. Predicting the Stability of Fullerene Allotropes Throughout the Periodic Table MA 02139

Contrasting the optical properties of the different isomers of. oligophenylene

Current address: Department of Chemistry, Hong Kong Baptist University, Kowloon Tong, Hong Kong,

Electronic band structure, sx-lda, Hybrid DFT, LDA+U and all that. Keith Refson STFC Rutherford Appleton Laboratory

Practical 1: Structure and electronic properties of organic molecules. B/ Structure, electronic and vibrational properties of the water molecule

Periodic Trends in Properties of Homonuclear

Role of Charge Transfer in the Structure and Dynamics of the Hydrated Proton

Supporting Information

MD simulation: output

Weyl semimetal phase in the non-centrosymmetric compound TaAs

Supporting Information

CHEM6085: Density Functional Theory

Supplementary Information

Supporting Online Materials: Nature of proton. transport in a water-filled carbon nanotube and in. liquid water

CCSD(T) benchmarks of non-equilibrium water clusters: the importance of monomer deformation

CHEMISTRY 362 Descriptive Inorganic Chemistry. M. Y. Darensbourg. Examination II March 29, Name:

General Physical Chemistry II

Pseudopotentials for hybrid density functionals and SCAN

Nonadiabatic dynamics simulations of singlet fission in 2,5-bis(fluorene-9-ylidene)-2,5-dihydrothiophene crystals. Supporting Information.

Atomic Models for Anionic Ligand Passivation of Cation- Rich Surfaces of IV-VI, II-VI, and III-V Colloidal Quantum Dots

Supporting Information for Ultra-narrow metallic armchair graphene nanoribbons

Lec20 Fri 3mar17

ALE 19. Classification of Solids

CHEM1901/ J-5 June 2013

130 points on 6 pages + a useful page 7

Infrared spectra of small biomolecules from first-principle molecular dynamics simulations and effective normal mode analysis

Experiment Section Fig. S1 Fig. S2

Supporting Information

Charge transfer in Carbon Nanotubes (?)

Decomposition of Fluoroethylene Carbonate. Additive and Glue Effect of Lithium Fluoride. Products for Solid Electrolyte Interphase: An

Density Functional Theory

Chemistry 4A Midterm Exam 2 Version B October 17, 2008 Professor Pines Closed Book, 50 minutes, 125 points 5 pages total (including cover)

Supplementary Information

Chem 11 Unit 4 POLARITY, MOLECULE SHAPE, and BEHAVIOUR

Excited State Intramolecular Proton Transfer in Julolidine Derivatives: an ab initio Study Electronic Supplementary Information (ESI)

Organic Chemistry. Review Information for Unit 1. Atomic Structure MO Theory Chemical Bonds

Journal of Computational Methods in Molecular Design, 2013, 3 (1):1-8. Scholars Research Library (

Supporting Information

Chemistry 4560/5560 Molecular Modeling Fall 2014

LUMO + 1 LUMO. Tómas Arnar Guðmundsson Report 2 Reikniefnafræði G

Supporting Information. Photophysics of Threaded sp-carbon Chains: The Polyyne is a Sink for Singlet and Triplet Excitation

1. Ionic bonding - chemical bond resulting from the attraction of positive and negative ions

Chapter 4. Glutamic Acid in Solution - Correlations

Lecture B2 VSEPR Theory

Molecular Dynamics Simulation Study of the Ionic Mobility of OH Using the OSS2 Model

Kirkwood-Buff Integrals for Aqueous Urea Solutions Based upon the Quantum Chemical Electrostatic Potential and Interaction Energies

Specific Ion Solvtion in Ethylene Carbonate and Propylene Carbonate

CHE3935. Lecture 4 Quantum Mechanical Simulation Methods Continued

Explaining the apparent arbitrariness of the LDA-1/2 self-energy. correction method applied to purely covalent systems

ELEMENTARY BAND THEORY

How Partial Atomic Charges and Bonding. Orbitals Affect the Reactivity of Aluminum

Supplementary information Silver (I) as DNA glue: Ag + - mediated guanine pairing revealed by removing Watson- Crick constraints

Supplementary Material

Electronic Supplementary Information

Formation and characterization of a. molecule-metal-molecule bridge in real space SUPPORTING INFORMATION

Quantum chemical studies of the physics around the metal-insulator transition in (EDO- TTF)2PF6 Linker, Gerrit

Supplementary Figure 1. ToF-SIMS data obtained for the Au(111) surface after the sublimation of the Cu-BCOD (mass 889 a.u.). During the sublimation

Electronegativity is a very useful concept for the explanation or understanding of chemical reactivity throughout the periodic table.

Lec20 Wed 1mar17 update 3mar 10am

Supplementary Information for Electronic signature of the instantaneous asymmetry in the first coordination shell in liquid water

Supplementary Material. Physisorption of Hydrophobic and Hydrophilic 1-alkyl-3- methylimidazolium Ionic Liquids on the Graphite Plate Surface

Self-Consistent Implementation of Self-Interaction Corrected DFT and of the Exact Exchange Functionals in Plane-Wave DFT

Hyeyoung Shin a, Tod A. Pascal ab, William A. Goddard III abc*, and Hyungjun Kim a* Korea

Lecture 4: Band theory

Walter Kohn was awarded with the Nobel Prize in Chemistry in 1998 for his development of the density functional theory.

Electronic Supplementary Information (ESI): First Principles Study of Photo-oxidation Degradation Mechanisms in P3HT for Organic Solar Cells

Example: H 2 O (the car file)

Ilya A. Shkrob,*, William J. Glover, Ross E. Larsen, and Benjamin J. Schwartz*,

Intermolecular Forces & Condensed Phases

Supporting Information

Intermolecular Forces in Density Functional Theory

What factors affect whether something is a solid, liquid or gas? What actually happens (breaks) when you melt various types of solids?

Calculations of band structures

The samples used in these calculations were arranged as perfect diamond crystal of

Topological edge states in a high-temperature superconductor FeSe/SrTiO 3 (001) film

IB Chemistry HL Notes according to official criteria/checkpoints. IB Chemistry. Year 2016 Mark 7.00 Pages 58 Published Jan 11, 2017

Supplementary Information

Molecules in strong magnetic fields

Ch. 9 NOTES ~ Chemical Bonding NOTE: Vocabulary terms are in boldface and underlined. Supporting details are in italics.

Supporting information. The role of halide ions in the anisotropic growth. of gold nanoparticles: a microscopic, atomistic.

PBS: FROM SOLIDS TO CLUSTERS

Valence bond theory accounts, at least qualitatively, for the stability of the covalent bond in terms of overlapping atomic orbitals.

Electrons and Molecular Forces

Exercise 1: Structure and dipole moment of a small molecule

Spectroscopy of the Cyano Radical in an Aqueous Environment

Ionic Bonding. Example: Atomic Radius: Na (r = 0.192nm) Cl (r = 0.099nm) Ionic Radius : Na (r = 0.095nm) Cl (r = 0.181nm)

Ab initio Molecular Dynamics Born Oppenheimer and beyond

Vibronic quantum dynamics of exciton relaxation/trapping in molecular aggregates

Structure of Cement Phases from ab initio Modeling Crystalline C-S-HC

1. Draw the molecular geometry and indicate any deviations from ideal VSEPR coordination angles. Give the point group for each molecule.

CHAPTER 6. ELECTRONIC AND MAGNETIC STRUCTURE OF ZINC-BLENDE TYPE CaX (X = P, As and Sb) COMPOUNDS

Chapter 3. Crystal Binding

READING. Review of Intermolecular Forces & Liquids (Chapter 12) Ion-Ion Forces. Ion-Dipole Energies

Yuan Ping 1,2,3*, Robert J. Nielsen 1,2, William A. Goddard III 1,2*

Molecular Geometry. Dr. Williamson s Molecular Geometry Notes. VSEPR: Definition of Terms. Dr. V.M. Williamson Texas A & M University Student Version

Transcription:

Linking electronic and molecular structure: Insight into aqueous chloride solvation Ling Ge, Leonardo Bernasconi, and Patricia Hunt Department of Chemistry, Imperial College London, London SW7 2AZ, United Kingdom STFC Rutherford Appleton Laboratory, Didcot, Oxfordshire OX11 0QX, United Kingdom Supplementary Information

Brief Discussion of the EMO Method. The EMO method interprets the time evolution of the electronic and molecular structure of both solute and solvent. Briefly, the EMO method for analysing the electronic structure of solutes and solvents starts by considering the Kohn-Sham Hamiltonian and energy eigenvalues obtained from the ab-initio MD. Orbitals obtained by diagonalising the Kohn-Sham Hamiltonian in an extended system have a Bloch form, and are therefore delocalised over the whole space. In a molecular liquid, the Kohn-Sham orbital energies are welldefined, however, they do not necessarily yield information about the local electronic structure of individual solvent molecules, Figure S1(a). This makes it difficult to analyse interactions between an ion and the solvating solvent molecules. Maximally localised Wannier orbitals are local to atomic (or bond) centers. However, the Hamiltonian in the Wannier basis is no longer diagonal, and thus there is no unique energy eigenvalue that can be associated with each orbital, Figure S1(c). An intermediate representation where orbitals are local to a molecule, but are delocalised within the molecule has been developed. The EMOs are obtained by assigning Wannier orbitals to a specific molecule, and block-diagonalising the Wannier Hamiltonian within the molecular subspace, Figure S1(b). Figure S1: Schematic representation of the structure of the DFT Hamiltonian in the (a) Kohn-Sham, (b) EMO and (c) Wannier representation for a pure liquid water atomic configuration obtained from a CPMD simulation at 298 K.

Each Wannier orbital is unambiguously associated with an atom and hence with a particular molecule. The EMOs are obtained by diagonalising blocks of the Wannier Hamiltonian within each molecular subspace and represent the electronic structure of individual solute and solvent molecules within the liquid. Each element of the EMO Hamiltonian matrix contributes either to a diagonal molecular block or to an off-diagonal intermolecular block, Figure S2. In a diagonal block all the Wannier orbitals are located on the same molecule and after diagonalisation these elements are interpreted as the effective energy" of the EMOs ( xi ). After diagonalisation small but finite elements remain in the off-diagonal blocks, representing electronic coupling ( xi,yj ) between the two molecules, where x y are molecule indices and i, j are orbital indices. Figure S2: Representation of the EMO Hamiltonian matrix.

Figure S3: Molecular orbital diagram for an isolated water molecular with C 2v symmetry.

Energy (in ev) Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics The EMO approach is sufficiently general to be used on gas-phase systems, as well as condensed (periodic) systems. Figure S4 is an illustrative example of the application of the EMO method to a simple gas-phase (Cl - + H2O) cluster. EMO Decomposition for (H2O + Cl - ) 0 EMO of water Kohn-Sham EMO of Cl - -5-10 βh2o,4=0.14 1b2 βh2o,3=0.70 3a1 βh2o,2=0.68 1b1 p 1b2 3a1+p (bonding) 1b1+p (small) 3p βcl,4=0.14 βcl,3=0.15 βcl,2=0.98-15 s 3s βcl,1=0.37-20 -25 βh2o,1 =0.41 2a1 2a1-30 Figure S4: EMO decomposition of the Kohn-Sham MOs of (H2O + Cl ) in gas phase. The middle panel shows the Kohn-Sham energy levels and MOs. The left and right panels show the Cl and H 2 O effective energy levels and MOs, respectively, which resemble those of a Cl and H 2 O in the gas phase.

Table S1. EMO beta parameters derived from the PBE calculations (on the three selected structures identified in the text). BLYP and PBE give almost identical results (BLYP results presented in Table 3 of the paper). PBE low Cl - HOMO 5(c) level Cl - HOMO 5(b) high Cl - HOMO 5(a) 1stshell-Cl 0.178 0.205 0.136 bulk-cl 0.003 0.004 0.004 1stshell-bulk 0.014 0.014 0.013 bulk 0.017 0.017 0.017 Figure S5: EMO orbital energies compared for BLYP and PBE. Calculations carried out on the three selected snap-shots identified in the main text of the paper. BLYP and PBE give almost identical results.

Figure S6: β as a function of Cl-O distance, the circles are the BLYP results reported in Figure 7 from the main text, the BPE data are the open triangles, diamonds and squares as identified in the legend. The PBE results are almost identical to the BLYP results. Figure S7: Electronic structure of gas phase H 2 O+Cl - (B3LYP/BLYP/MP2) BLYP and B3LYP underestimate the gap between the 3-fold degenerate HOMO level (Cl HOMO) and HOMO-1 (water HOMO).

Figure S8: O-O radial distribution function. Figure S9: O-H radial distribution function.

Table S2: Kohn-Sham HOMO Energy and EMO α parameters for the structures shown in Figure 5 of the main article. Table S3: EMO β parameters for the water molecules within the first solvation shell of the structures shown in Figure 5 of the main article.

Table S4: Association energies ΔE for (H 2 O) 2 and (H 2 O + Cl - ) System ΔE opt ΔE ZPE ΔE BSSE ΔE (H 2 O) 2-31.5 13.9 8.0-9.6 H 2 O + Cl - -74.6 7.9 10.7-56.0 Table S5: Conformer energies of the MP2/cc-pVTZ optimized structures of the [Cl(H 2 O) 5 ] - and [Cl(H 2 O) 6 ] - clusters. oop=out-of-plane, ip=in-plane System Final coordination ΔE MP2 ΔE MP2+ZPE ΔG MP2 [Cl(H 2 O) 5 ] - 4 H-bonding 5.4 2.6 4.3 5 H-bonding 0.0 0.0 0.0 [Cl(H 2 O) 6 ] - 6 H-bonding 15.9 11.1 0.0 4 H-bonding (oop) 0.0 0.0 4.0 4 H-bonding (ip) 21.3 17.2 14.9 3 H-bonding 14.4 11.1 9.2 Table S6: Conformer energies of the B3LYP/cc-pVTZ optimized structures of the [Cl(H 2 O) 5 ] - and [Cl(H 2 O) 6 ] - clusters. oop=out-of-plane, ip=in-plane System Final coordination ΔE B3LYP ΔE B3LYP+ZPE ΔG B3LYP [Cl(H 2 O) 5 ] - 4 H-bonding 3.6 2.5 0.0 5 H-bonding 0.0 0.0 15.3 [Cl(H 2 O) 6 ] - 6 H-bonding 13.3 9.7 0.0 4 H-bonding (oop) 0.0 0.0 5.6 3 H-bonding (ip) 14.5 10.6 8.4 3 H-bonding (oop) 4.6 2.0 4.4

Table S7: HOMO and LUMO levels of the MP2/cc-pVTZ optimized structures of the [Cl(H 2 O) 5 ] - and [Cl(H 2 O) 6 ] - clusters, VBE is the valence band edge of the water component. oop=out-of-plane, ip=in-plane System Final coordination water VBE HOMO LUMO ΔE homolumo gap ΔE VBEhomo gap [Cl(H 2 O) 5 ] - 4 H-bonding -9.18-6.90 7.22 14.12 2.28 5 H-bonding -9.76-6.81 8.00 14.81 2.95 [Cl(H 2 O) 6 ] - 6 H-bonding -10.05-7.55 7.71 15.26 2.50 4 H-bonding (oop) -9.76-7.04 7.59 14.63 2.72 4 H-bonding (ip) -9.83-6.98 7.03 14.01 2.85 3 H-bonding -9.63-6.61 7.26 13.87 3.02 Table S8: HOMO and LUMO levels of the B3LYP/cc-pVTZ optimized structures of the [Cl(H 2 O) 5 ] - and [Cl(H 2 O) 6 ] - clusters, VBE is the valence band edge of the water component. System Final coordination water VBE HOMO LUMO ΔE homolumo gap ΔE VBEhomo gap [Cl(H 2 O) 5 ] - 4 H-bonding -4.00-3.29 3.94 7.33 0.71 5 H-bonding -4.66-3.00 4.45 7.45 1.66 [Cl(H 2 O) 6 ] - 6 H-bonding -5.00-3.89 4.08 7.97 1.11 4 H-bonding (oop) -4.75-3.40 3.97 7.37 1.35 3 H-bonding (ip) -4.52-3.20 3.81 7.01 1.32 3 H-bonding (oop) -4.64-3.03 3.96 6.99 1.61

(a) (b) Figure S10: [Cl(H 2 O) 5 ] - (a) 4 H-bonding and 1 local water molecule and (b) 5 H- bonding and no local water molecules (a) (b) Figure S11: [Cl(H 2 O) 6 ] - two configurations with 4 H-bonding and two local water molecules (a) (b) Figure S12: [Cl(H 2 O) 6 ] - (a) 3 H-bonding and 3 local water molecules and (b) 6 H- bonding and no local water molecules

Figure S13: Cartoon showing the free reorientation of water dipole moment for a coordinated water molecule.

Figure S14: Time evolution of Cl-O distances along the CPMD simulation (31.56 ps; extended simulation) of aqueous chloride (63H 2 O+Cl - ). Each line represents a water molecule. Only distances corresponding to the water molecules that belong to the first solvation shell at any time along the simulation are displayed.

Figure S15 Time evolution of Cl-O distances along the Car-Parrinello simulation (31.56 ps; extended simulation) of aqueous chloride (63H2O+Cl ). The dashed line represents the first solvation shell radius (first minimum of the Cl-O RDF), and the dotted line represents the second solvation shell distance (second minimum of the Cl-O RDF). (a) representing water molecules always in bulk, (b) representing category (i), (c) representing category (ii), and (d) representing category (iii).

Figure S16: Time evolution around the Cl anion. H atoms within the Cl-H cutoff are grey, O atoms within the Cl-O cut-off are red, O atoms between 5.00 Å and the Cl-O cut-off are yellow, other water molecules as "lines". (a) shows the start of the segment, (b) shows the full segment (sampled from 600 steps), the arrow indicates a water molecule that has moved from outside the Cl-O boundary to within it, and also started to H-bond with the Cl. (c) shows the polar nature of the first solvation shell with the H-bonding water molecules collected on one side, and the "local" water molecules on the other side at a longer distance but still within the Cl-O cut-off. (d) shows the movement of H- bound water molecules, more localised and focused than that of the "local" water molecules.