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SUPPORTING INFORMATION FOR Controlling non-specific protein adsorption in a plugbased microfluidic system by controlling interfacial chemistry using fluorous-phase surfactants. L. Spencer Roach, Helen Song, and Rustem F. Ismagilov* Department of Chemistry, University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637 ABSTRACT: This supporting information section contains the details of the R f OEG extraction and the four figures that were mentioned within the primary article. R f -OEG Extraction. In a typical preparation, Zonyl FSO-100 (2 ml) was shaken vigorously in FC-3283 (10 ml). The resulting heterogenous mixture was filtered through a tightly packed cotton plug. The filtrate was extracted once with water (10 ml), yielding an emulsion. The emulsion was centrifuged to separate the fluorous phase. The fluorous phase was decanted and stored at 2 C in the dark for later use. Zonyl FSO-100 (DuPont, Wilmington, DE) is a mixture of perfluorinated alkanes capped with oligoethylene 1

glycol groups having the general structure CF 3 (CF 2 ) m (CH 2 CH 2 O) n H. Electrospray mass spectrometry showed that the aqueous extraction removed water-soluble species with large values of n. Furthermore, the fluorous extract contained a mixture of species with m = 5, 7, and 9, and 11 with n = 3, 4, and 5. The average molecular weight of R f -OEG was determined by MS to be 557 g mol -1. 1 H NMR was used to determine the concentration of FSO in fluorous solution. Fluorous FSO extract (200 µl), 1H,1Hperfluorooctylamine (20 µl, Lancaster Synthesis, Lancashire, UK), and FC-3283 (1000 µl) were combined in an NMR tube. Integration of the peaks gave the concentration of R f -OEG in the original fluorous extract as ~2 mg ml -1. We could not exclude contamination of the surfactant by the corresponding 1H,1H,2H,2H-perfluoroalcohols (which should be less surface active than R f -OEG and should not affect surface properties significantly). The extract was further diluted with FC-3283 prior to use in a 1:4 (v/v) ratio, so the experimental concentration of R f -OEG in fluorocarbon oil was ~0.5 mg ml -1. To check for remaining aqueous solubility of FSO, an aliquot of the original filtrate was extracted twice. The 1 H NMR spectrum gave integrations that were identical to those observed in a singly extracted FSO solution, indicating that not a significant amount of the surfactant was removed by the second aqueous extraction. Figure S-1 shows drop tensiometry measurements for alkaline phosphatase at interfaces that presented one of the three following surfactants: R f -COOH, R f -CH 2 CH 2 OH, or R f -OEG. Figure S-2 shows the Selwyn s plots for alkaline phosphatase kinetics measured within a microfluidic device for plugs formed with one of the following three surfactants: R f -COOH, R f -CH 2 CH 2 OH, or R f - OEG. Figure S-3 shows tensiometry data for variable concentrations of fibrinogen at an interface that presents the R f -COOH surfactant. Figure S-4 shows tensiometry data for 1 mg ml -1 fibrinogen at a pure fluorocarbon oil interface. 2

Figure S-1. Graphs of surface tension versus time for AP at interfaces that presented one of the following surfactants: R f -COOH ( ), R f -CH 2 CH 2 OH ( ) and R f -OEG ( ). Open symbols indicate (Buffer)/(Surfactant+FC) control droplets, closed symbols indicate (Buffer+AP)/(Surfactant+FC) test droplets. For all surfactants, the surface tension of the test droplet matched the surface tension of the control droplet. Therefore, we concluded that AP does not adsorb at interfaces that presented any one of the three surfactants. AP concentration was 10 µg ml -1 in 1M DEA buffer. Surface Tension (mn m -1 ) 45 40 35 30 25 20 15 0 50 100 Time (sec) 150 3

Selwyn s test is performed by taking the kinetic data for [P] versus t (Figure S-2 a,c) and re-plotting it as [P] versus [E] 0 t (Figure S-2 b,d) at the same substrate concentration, where [P] is the timedependent product concentration, [E] 0 is the initial enzyme concentration and t is time. If there is no enzyme denaturation, then all the kinetic curves within the [P] versus [E] 0 t plot should superimpose on one another. Data were analyzed for three substrate concentrations. Enzyme concentration was varied at each substrate concentration. For AP, Selwyn plots indicated that all kinetic curves for R f - COOH did not superimpose with the fit curves. However, there was only a slight deviation for both w = 150 µm (Figure S-2b) and w = 50 µm (Figure S-2d). Figure S-2. Selwyn s test for adsorption with alkaline phosphatase (AP). AP kinetics was measured within microfluidic devices for w = 150 µm (a, b) and w = 50 µm (c, d) for three different surfactants: R f -COOH ( ), R f -CH 2 CH 2 OH ( ) and R f -OEG ( ). (a, c) Kinetics was measured for 2 µm fluorescein diphosphate (FDP) in DEA buffer at ph = 10 and AP concentration was varied from 0.05 µm, 0.1 µm to 0.2 µm. Black dashed lines show fluorimeter data at the same concentrations and solid black curves represent expected kinetic curves for fully active AP, where k cat /K M = 0.75 µm -1 s -1. In (b, d), Selwyn plots are shown, where kinetic data from (a, c) were plotted for product concentration versus [E] 0 t for the same substrate concentration, where [E] 0 is the initial enzyme concentration and t is time. In Selwyn plots, all kinetic curves for (Buffer+AP)/(R f -COOH+FC) do not superimpose with the black fit curves. Kinetic curves for (Buffer+AP)/(R f -CH 2 CHOH+FC) superimpose with the black fit curves only when w = 50 µm but not when w = 150 µm. However, all kinetic curves for (Buffer+AP)/(R f -OEG+FC) superimpose with the black fit curves. 4

Figure S-3. Variable concentrations of fibrinogen adsorbing at an interface presenting the R f -COOH surfactant. More concentrated fibrinogen solutions absorb faster than less concentrated solutions, but all reach the same equilibrium surface tension. Surface Tension (mn m -1 ) 45 40 35 30 25 20 15 10 1 Buffer 1 µg ml -1 Fibrinogen 10 µg ml -1 Fibrinogen 100 µg ml -1 Fibrinogen 2 4 6 8 2 4 6 8 2 4 6 8 10 100 Time (sec) 5

Figure S-4. Adsorption of 1 mg ml -1 fibrinogen in PBS buffer to a pure fluorocarbon oil interface. 6