Lecture #9 Redfield theory of NMR relaxation

Similar documents
Problem Set #6 BioE 326B/Rad 226B

Lecture #6 Chemical Exchange

Lecture #6 NMR in Hilbert Space

Lecture #8 Redfield theory of NMR relaxation

Prob (solution by Michael Fisher) 1

Introduction to NMR Product Operators. C. Griesinger. Max Planck Institute for Biophysical Chemistry. Am Faßberg 11. D Göttingen.

8 NMR Interactions: Dipolar Coupling

Physikalische Chemie IV (Magnetische Resonanz) HS Solution Set 2. Hand out: Hand in:

Tutorial Session - Exercises. Problem 1: Dipolar Interaction in Water Moleclues

Solution Set 3. Hand out : i d dt. Ψ(t) = Ĥ Ψ(t) + and

16.1. PROBLEM SET I 197

Lecture #7 In Vivo Water

NMR Dynamics and Relaxation

Phys 622 Problems Chapter 5

MR Fundamentals. 26 October Mitglied der Helmholtz-Gemeinschaft

0 + E (1) and the first correction to the ground state energy is given by

Chem 3502/4502 Physical Chemistry II (Quantum Mechanics) 3 Credits Spring Semester 2006 Christopher J. Cramer. Lecture 20, March 8, 2006

C/CS/Phy191 Problem Set 6 Solutions 3/23/05

Physics 221A Fall 2005 Homework 11 Due Thursday, November 17, 2005

Rotational motion of a rigid body spinning around a rotational axis ˆn;

Relaxation. Ravinder Reddy

4 Quantum Mechanical Description of NMR

Chm 331 Fall 2015, Exercise Set 4 NMR Review Problems

Physics 115C Homework 2

MATH325 - QUANTUM MECHANICS - SOLUTION SHEET 11

BCMB/CHEM Spin Operators and QM Applications

Introduction to Relaxation Theory James Keeler

Principles of Nuclear Magnetic Resonance in One and Two Dimensions

Quantum Mechanics II Lecture 11 ( David Ritchie

Massachusetts Institute of Technology Physics Department

20 The Hydrogen Atom. Ze2 r R (20.1) H( r, R) = h2 2m 2 r h2 2M 2 R

Chapter 4. Q. A hydrogen atom starts out in the following linear combination of the stationary. (ψ ψ 21 1 ). (1)

Homework assignment 3: due Thursday, 10/26/2017

PRACTICAL ASPECTS OF NMR RELAXATION STUDIES OF BIOMOLECULAR DYNAMICS

NMR Relaxation and Molecular Dynamics

Biophysical Chemistry: NMR Spectroscopy

Slow symmetric exchange

Spin Relaxation and NOEs BCMB/CHEM 8190

8.05 Quantum Physics II, Fall 2011 FINAL EXAM Thursday December 22, 9:00 am -12:00 You have 3 hours.

Rotational Brownian motion; Fluorescence correlation spectroscpy; Photobleaching and FRET. David A. Case Rutgers, Spring 2009

Control of Spin Systems

CHAPTER 5 DIPOLAR COHERENCE TRANSFER IN THE PRESENCE OF CHEMICAL SHIFT FOR UNORIENTED AND ORIENTED HOMONUCLEAR TWO SPIN-½ SOLID STATE SYSTEMS

Problem 1: Spin 1 2. particles (10 points)

1 Time-Dependent Two-State Systems: Rabi Oscillations

Problem Set 2 Due Tuesday, September 27, ; p : 0. (b) Construct a representation using five d orbitals that sit on the origin as a basis: 1

Concepts and Methods of 2D Infrared Spectroscopy. Peter Hamm and Martin T. Zanni. Answer Keys: Chapter 5

26 Group Theory Basics

PhD in Theoretical Particle Physics Academic Year 2017/2018

1.6. Quantum mechanical description of the hydrogen atom

IV. Electronic Spectroscopy, Angular Momentum, and Magnetic Resonance

Matrices and Deformation

Nuclear Magnetic Resonance Spectroscopy

T 1, T 2, NOE (reminder)

Fun With Carbon Monoxide. p. 1/2

Problem Set 2 Due Thursday, October 1, & & & & # % (b) Construct a representation using five d orbitals that sit on the origin as a basis:

1 Measurement and expectation values

Spin-Boson Model. A simple Open Quantum System. M. Miller F. Tschirsich. Quantum Mechanics on Macroscopic Scales Theory of Condensed Matter July 2012

Longitudinal relaxation in dipole-coupled homonuclear three-spin systems: Distinct correlations and odd spectral densities

QUANTUM MECHANICS I PHYS 516. Solutions to Problem Set # 5

NOTES ON LINEAR ALGEBRA CLASS HANDOUT

MASSACHUSETTS INSTITUTE OF TECHNOLOGY 5.76 Modern Topics in Physical Chemistry Spring, Problem Set #2

Spin Dynamics Basics of Nuclear Magnetic Resonance. Malcolm H. Levitt

Addition of Angular Momenta

Introduction to quantum information processing

PRACTICAL ASPECTS OF NMR RELAXATION STUDIES OF BIOMOLECULAR DYNAMICS

Physics 4022 Notes on Density Matrices

Problem Set No. 3: Canonical Quantization Due Date: Wednesday October 19, 2018, 5:00 pm. 1 Spin waves in a quantum Heisenberg antiferromagnet

Chimica Inorganica 3

1 Recall what is Spin

Quantum Physics II (8.05) Fall 2002 Assignment 12 and Study Aid

5.61 Physical Chemistry Lecture #36 Page

PHYS Quantum Mechanics I - Fall 2011 Problem Set 7 Solutions

5.61 Physical Chemistry Lecture #35+ Page 1

PROTEIN NMR SPECTROSCOPY

Lecture 10. Central potential

Solid-state NMR and proteins : basic concepts (a pictorial introduction) Barth van Rossum,

Sommerfeld (1920) noted energy levels of Li deduced from spectroscopy looked like H, with slight adjustment of principal quantum number:

An introduction to Solid State NMR and its Interactions

d 3 r d 3 vf( r, v) = N (2) = CV C = n where n N/V is the total number of molecules per unit volume. Hence e βmv2 /2 d 3 rd 3 v (5)

Physics 342 Lecture 26. Angular Momentum. Lecture 26. Physics 342 Quantum Mechanics I

Lecture 6. A More Quantitative Description of Pulsed NMR: Product Operator Formalism.

Advanced Quantum Mechanics

Quantum Physics III (8.06) Spring 2007 FINAL EXAMINATION Monday May 21, 9:00 am You have 3 hours.

We now turn to our first quantum mechanical problems that represent real, as

Angular Momentum set II

St Hugh s 2 nd Year: Quantum Mechanics II. Reading. Topics. The following sources are recommended for this tutorial:

Quantum Theory of Angular Momentum and Atomic Structure

NANOSCALE SCIENCE & TECHNOLOGY

Columbia University Department of Physics QUALIFYING EXAMINATION

Rad 226b/BioE 326b In Vivo MR: Relaxation Theory and Contrast Mechanisms

Quantum Many Body Theory

Solutions to chapter 4 problems

CHEMISTRY 333 Fall 2006 Exam 3, in class

Lecture 2: Open quantum systems

Review of paradigms QM. Read McIntyre Ch. 1, 2, 3.1, , , 7, 8

B2.III Revision notes: quantum physics

Advanced Quantum Mechanics

Quantum Mechanics (Draft 2010 Nov.)

Physics 351 Wednesday, January 14, 2015

Quantum Physics III (8.06) Spring 2008 Final Exam Solutions

Transcription:

Lecture 9 Redfield theory of NMR relaxation Topics Redfield theory recap Relaxation supermatrix Dipolar coupling revisited Scalar relaxation of the st kind Handouts and Reading assignments van de Ven, Chapters 6.2. Kowalewski, Chapter 4. Abragam Chapter VIII.C, pp 289-305, 955.

Redfield theory We ended the last lecture with the following master equation dσ dt = iĥ 0 σ Γ σ σ B ( ) and we were happy! relaxation superoperator 2

Redfield theory The relaxation superoperator was defined as: - spectral density functions: J q e q - correlation functions: G q 0 ( ) = G q τ ( τ ) = F q ( t )F q t τ Γ = J ( q e ) q  q  q q ( )e ie qτ dτ. ( ) H 0 eigenoperators Recipe:. Given 3. Plug and chug. Ĥ ( t) = Ĥ0 + ( Ĥ t). Random functions of time 2. Express t as a linear combination of eigenoperators of Ĥ Ĥ ( ) Ĥ 0, ( t) = F q ( t)  q. q But how do we compute T or T 2? 3

The Relaxation Supermatrix Rather than directly solving the master equation, we often just want to calculate the time dependence of particular coherences, e.g. Î x, Î y, or Î z. Express the density operator in the product operator basis σ = j C j C j C = Tr( σ C )! σ =! I x S x! 2I z S z C j { 2 Two-spin case E, I x, S x, I y, S y,,2 I z S z } vector in a 6-D coherence (Liouville) space Rewrite the master equation as a vector/matrix equation: 4

The Relaxation Supermatrix Rewrite the master equation as a matrix equation: Γ R Supermatrix with elements R jk = Tr Ĉ j ΓĈ k! If we reorder σ to first list populations, then singlequantum terms, then doublequantum terms,... - Relaxation supermatrix, R, is block diagonal (secular approx). - Cross relaxation only occurs for coherences with degenerate eigenvalues of Ĥ 0. trace ( ) = Ĉ j Γ Ĉk Notation used in van de Ven. Don t confuse with expected value. H 0 eigenvalue 0 ±(ω I -ω S ) ±ω I, ±ω S From Problem Set, these eigenvalues are the transition frequencies, i.e. sums and differences of the system energy levels ±(ω I +ω S ) 5

Calculating Relaxation Times Rewrite the master equation in terms of the operator coefficients: d dt Ĉ j = i Ĉ j Ĥ 0 Ĉ k Ĉ k Ĉ k Ĉk k ( ) Ĉ j Γ Ĉ k B ( Rotations Relaxation Examples T,I = Îz Γ Îz T,S = Ŝz Γ Ŝz T,cross = Îz Γ Ŝz T 2,I = Î x Γ Î x = Î y Γ Î y we just need to compute some (a bunch) of commutators. 6

Relaxation due to a random field (or hints for Problem Set 5) Consider a Hamiltonian of the form Ĥ = Ĥ0 + Ĥ t ( ) = γb 0 Î z γδb( t)îz with ΔB t ( ) = 0 ΔB( t)δb t τ ( ) = B 2 e τ τ c Noting that Ĥ 0 Î z = 0 Îz Eigenvalue Eigenoperator ( ) = γδb ( t) J 0 ( ω) = γ 2 B 2 τ c then  0 = Îz, F 0 t, and T 2 = Î x Γ = J ( q e ) q  q  q q Γ Î x = J 0 ( 0)B 2 Î z Î z +ω 2 τ c 2 Assumed to be normalized = γ 2 B 2 τ c Tr( Î Î x z Î z Î ) = γ 2 x B 2 τ c Tr( iî Î x z Î ) = γ 2 y B 2 τ c Tr( Î xî ) x Hence: T 2 = γ 2 B 2 τ C T =? 7

Dipolar Coupling Revisited The complete dipolar coupling Hamiltonian is given by Ĥ dipole = γ Iγ S! µ 0! I Ŝ! 3 r 3 4π r (! Î r)(! Ŝ! r)! ( 2 This can be written as: Ĥ D ( t) = γ Iγ S! µ 0 r 3 4π q F q ( t) Âq where! r where vector from spin I to spin S With tumbling, both θ and φ are functions of time.  0 = ( 6 2ÎzŜz 2 Î+Ŝ ) 2 Î Ŝ+  ± = ± 2  ±2 = 2 αŜ± ( Î ± Ŝ z + ) ÎzŜ± and F 0 (t) = 2 3 ( 3cos 2 θ ) F ± (t) = ±3sinθ cosθe iφ F ±2 (t) = 3 2 sin2 θe 2iφ Hey! These look like rank 2 spherical harmonics.

Dipolar Coupling Revisited Noting the following are eigenoperators of (see Problem Set ) H 0 Eigenoperator Eigenvalue Î z Ŝ z Î + Ŝ + 0 ( ω I +ω S ) Î Ŝ Î + Ŝ ω I +ω S ( ω I ω S ) Together with F q * F q = 6 5 Î Ŝ + ω I ω S Î + Ŝ z ω I Î Ŝ z ω I Î z Ŝ + ω S Î z Ŝ ω S We can now compute Γ.

Dipolar coupling superoperator Case : unlike spins, after much algebra Γ = 4 γ 2 ( Iγ 2 S! 2 * ) 2J 0 0r 6 + * + ( ) ÎzŜz Î z Ŝ z 4 J ( ω ω I S ) + 3 2 J ( ω +ω I S ) + 3 2 J ω I ( ) Î xŝz Î x Ŝ z+ Î y Ŝ z Î y Ŝ z 4 J ( ω ω I S ) 3 2 J ( ω +ω I S ) Î xŝx + 3 2 J ω S Î xŝx Î x Ŝ x+ Î y Ŝ y ( ) ÎzŜx Î y Ŝ y+ Î y Ŝ y Î y Ŝ y+ Î x Ŝ y Î z Ŝ x+ Î z Ŝ y Î x Ŝ x Î x Ŝ y Î x Ŝ y+ Î y Ŝ x Î z Ŝ y Î y Ŝ x Î y Ŝ x Î y Ŝ x Î x Ŝ y Note: Î z Ŝ z Î z Ŝ z

Dipolar coupling superoperator Before calculating a bunch of commutators, we should note that there are multiple terms of the form C q Ĉ q, and this can make things easier C q Ĉ q Ĉ p = 0 if Ĉ q Ĉ p = 0 Ĉ p if Ĉ q Ĉ p 0 Remember all product operators cyclically commute. Terms of the form C q Ĉ r give rise to cross relaxation Example: Î x Ŝ y Î y Ŝ x Î z = 4 Ŝz

Dipolar coupling unlike Spins Calculating T 2. Let q = µ 2 0 γ 2 I γ 2 S! 2 6π 2 0r 6 ΓÎ = q 2J 0 x ( ( ) + J ω 2 ( I ω S ) + 3J ( ω I +ω S ) + 2 3 J ( ω I ) + 3J ( ω S ))Î x T 2,I = Î x Γ Î x = q 4J 0 2 ( ( ) + J ( ω I ω S ) + 6J ( ω I +ω S ) + 3J ( ω I ) + 6J ( ω S )) Let s calculate T. ΓÎz = q ( J ( ω I ω S ) + 6J ( ω I +ω S ) + 3J ( ω I ))Îz + J ω I ω S T,I = Îz Γ Îz ( ( ) + 6J ( ω I +ω S ) + 3J ( ω I )) = q J ω I ω S And the cross relaxation term is: T,IS = Ŝz Γ Îz ( ( ) J ( ω I ω S )) = q 6J ω I +ω S ( ( ) 6J ( ω I +ω S ))Ŝz

Dipolar coupling like spins Case 2: The equation for spins with the same (or nearly the same) chemical shift, ~ω 0, is even longer due to cross terms between Î z Ŝ z and Î ± Ŝ. Γ = see van de Ven p. 355 T = q 3J(ω 0 )+2J(2ω 0 ) ( ) But now there is also transverse cross relaxation between spins I and S. T 2,I = Î x Γ Î x = q 5J 0 2 ( ( ) + 9J ( ω 0 ) + 6J ( 2ω 0 )) T 2,IS = Ŝx Γ Î x = q 2J 0 ( ( ) + 3J ( ω 0 )) This effect is exploited in some spin lock experiments.

Summary of Redfield theory dσ dt = iĥ 0 σ Γ σ σ B ( ) Relaxation arises from perturbations having energy at the transition frequencies. That is, if the eigenvalues of Ĥ 0 (= energies of the system/!) are e, e 2, etc. Then, the spectral density function is probed as frequencies ±(e i e j ). Cross relaxation only occurs between coherences with the same transition frequencies. Although Redfield theory may seem much more complicated than the Solomon equations for dipolar relaxation, it is actually very useful. For example, T and T 2 due to chemical shift anisotropy or scalar relaxation of the st and 2 nd kind are readily calculated. 4

Example: Scalar relaxation of the st kind Consider a J-coupled spin pair with the following Hamiltonian: ( ) Ĥ = Ĥ0 + Ĥ = ω I Î z ω S Ŝ z + 2π J ÎzŜz + Î xŝx + Î yŝy We would normally expect a doublet from the I spin, however chemical exchange by the S spin can become a relaxation mechanism. Under exchange, with an exchange time of τ ex, the coupling constant between the I spin and a spin S i becomes a random function of time. Rewriting the perturbing Hamiltonian:! where A 2 i = A i ( t) A i t +τ Ĥ A 2 = 4π 2 J 2 0 otherwise ( t) = A i ( t)!! I S if I and S i are on the same molecule ( ) = A 2 e τ τ ex = probability the I and S i spins are on the same molecule at time t + τ, given that they are at time t.

Example: Scalar relaxation of the st kind Thus we have: Ĥ 0 = ω I Î z ω S Ŝ z and Ĥ t Noting the eigenoperators and corresponding eigenvalues of Ĥ 0 Eigenoperator Eigenvalue Î z Ŝ z 0 Î + Ŝ ( ω I ω S ) Î Ŝ + ω I ω S Written as a sum of eigenoperators of, the perturbing Hamiltonian becomes Ĥ H 0 ( ) = A i ( t) ÎzŜz + Î xŝx + Î yŝy ( t) = A i ( t)îzŝz + A 2 i ( t)î+ŝ + A 2 i ( t)î Ŝ+ ( ). All we need now is the spectral density function, which we ll denote J ex ( ω). Let P i be the probability spins I and S i are on the same molecule, then J ex ( ω) = P i A i ( t) A i ( t +τ ) cosωτ dτ. i 0 Assume the I spin is always coupled to some S spin, i.e. P i = J ex ( ω) = A 2 τ ex +ω 2 2 τ ex i

Example: Scalar relaxation of the st kind Hence: Γ = A 2 J ex ( 0)ÎzŜz Î z Ŝ z+ 4 A 2 J ex ( ω I ω S )Î+Ŝ Î + Ŝ + 4 A 2 J ex ( ω I ω S )Î Ŝ+ Î Ŝ + From which it follows T,I = Îz ( ) Γ Îz = 2A S S + 2 3 τ ex + ( ω I ω S ) 2 2 τ ex = 8π 2 J 2 S( S +) 3 τ ex + ( ω I ω S ) 2 2 τ ex T 2,I = Î x Γ Î x = Î y ( ) = Note: the S(S+)/3 factor comes from Tr Ŝp 2 S(S +), p = product operator 3 where S = spin of the unpaired electron system or nucleus. ( ) Γ Î y = Γ Î+ Î + = 4π 2 J 2 S S + 3 τ ex + τ ex + ( ω I ω S ) 2 2 τ ex For those who complete the homework, we note that these equations have the same form as scalar relaxation of the 2 nd kind with the correlation time given by τ ex instead of T,S and T 2,S.

Next Lecture: Redfield theory- Examples 8