Awanish Kumar, Anjeeta Rani and Pannuru Venkatesu* Department of Chemistry, University of Delhi, Delhi

Similar documents
FLUORESCENCE STUDY ON TRYPTOPHAN POTASSIUM IODIDE INTERACTION

1. Use the Data for RNAse to estimate:

MCB100A/Chem130 MidTerm Exam 2 April 4, 2013

Thermodynamic Stability of Hoogsteen and Watson-Crick. Base Pairs in the Presence of Histone H3-Mimicking Peptide

MCB100A/Chem130 MidTerm Exam 2 April 4, 2013

Macromolecule Stability Curves

CHAPTER 6 ENZYME KINETICS AND THERMAL INACTIVATION OF POLYPHENOL OXIDASE

Thermodynamics of Borax Dissolution

reduction kj/mol

Physical Chemistry Advanced laboratory course. Excimer formation

Exp.3 Determination of the Thermodynamic functions for the Borax Solution

Full file at

Supplementary Figures

Biological Thermodynamics

A. K. R. Junker et al 1 Investigating subtle 4f vs. 5f...

A Single Outer Sphere Mutation Stabilizes apo- Mn Superoxide Dismutase by 35 C and. Disfavors Mn Binding.

Unit 12. Thermochemistry

Ch. 19 Entropy and Free Energy: Spontaneous Change

BIOC : Homework 1 Due 10/10

Correlating enzyme density, conformation and activity on nanoparticle. surface for high functional bio-nanocomposite

Isothermal experiments characterize time-dependent aggregation and unfolding

Gibbs Free Energy. Evaluating spontaneity

A Simple Fluorescein Derived Colorimetric and Fluorescent off - on Sensor For The Detection of Hypochlorite

Basics of Thermodynamics: Easy learning by Dr. Anjana Sen

3. Solutions W = N!/(N A!N B!) (3.1) Using Stirling s approximation ln(n!) = NlnN N: ΔS mix = k (N A lnn + N B lnn N A lnn A N B lnn B ) (3.

arxiv:cond-mat/ v1 7 Jul 2000

= (-22) = +2kJ /mol

Effect of the Single and Double Chain Surfactant Cobalt(III) Complexes on Their Hydrophobicity, Micelle Formation,

Effect of Guanidine Hydrochloride on the Thermal Stability of Hen Egg White Lysozyme

Cholera Toxin Invasion

Lecture 21 (11/3/17) Protein Stability, Folding, and Dynamics Hydrophobic effect drives protein folding

CH 223 Sample Exam Exam II Name: Lab Section:

Exam 2 Solutions. for a gas obeying the equation of state. Z = PV m RT = 1 + BP + CP 2,

Investigation of Cation Binding and Sensing by new Crown Ether core substituted Naphthalene Diimide systems

Chapter 1. Topic: Overview of basic principles

A rule of seven in Watson-Crick base-pairing of mismatched sequences

BAE 820 Physical Principles of Environmental Systems

Supporting Information

Thermal protein unfolding by differential scanning calorimetry and circular dichroism spectroscopy Two-state model versus sequential unfolding

Applications of Free Energy. NC State University

Electronic Supporting Information (ESI) Aqueous Ionic Liquids and Deep Eutectic Solvents. for Cellulosic Biomass Pretreatment and Saccharification

Lecture 2 and 3: Review of forces (ctd.) and elementary statistical mechanics. Contributions to protein stability

FST 123 Problem Set 3 Spring, V o at [S] 0 = 10 mm (mm/min)

Lecture 27 Thermodynamics: Enthalpy, Gibbs Free Energy and Equilibrium Constants

Supporting Information

EXAM 1 Fall 2009 BCHS3304, SECTION # 21734, GENERAL BIOCHEMISTRY I Dr. Glen B Legge

Chemistry 123: Physical and Organic Chemistry Topic 2: Thermochemistry S H 2 = S H 2 R ln P H2 P NH

AP CHEMISTRY 2007 SCORING GUIDELINES (Form B)

Novel fluorescent cationic benzothiazole dye response to G-quadruplex aptamer as a novel K + sensor

SCORING. The exam consists of 5 questions totaling 100 points as broken down in this table:

Microcalorimetric techniques

Lecture Notes 1: Physical Equilibria Vapor Pressure

Biology Chemistry & Physics of Biomolecules. Examination #1. Proteins Module. September 29, Answer Key

a) Write the reaction that occurs (pay attention to and label ends correctly) 5 AGCTG CAGCT > 5 AGCTG 3 3 TCGAC 5

Chemistry 425 September 29, 2010 Exam 1 Solutions

Why Proteins Fold. How Proteins Fold? e - ΔG/kT. Protein Folding, Nonbonding Forces, and Free Energy

Chemistry 122 Wrap-Up Review Kundell

A colorimetric and fluorescent turn-on sensor for pyrophosphate. anion based on dicyanomethylene-4h-chromene framework

J- vs. H-type assembly: pentamethine cyanine (Cy5) as near IR chiroptical. reporter

Second Law of Thermodynamics

Chem 112 Dr. Kevin Moore

Cold denaturation of staphylococcal nuclease (protein stability/calorimetry)

Supporting Information

Class XI Chapter 6 Thermodynamics Chemistry

Protein Folding In Vitro*

The Second Law of Thermodynamics (Chapter 4)

Supporting Information

Second law of thermodynamics

CHM 112 Chapter 16 Thermodynamics Study Guide

Supporting Information for:

Gibb s Free Energy. This value represents the maximum amount of useful work (non PV-work) that can be obtained by a system.

Chem 401 Unit 1 (Kinetics & Thermo) Review

THE THERMODYNAMICS OF POTASSIUM NITRATE DISSOLVING IN WATER 1

5th CCPN Matt Crump. Thermodynamic quantities derived from protein dynamics

Supporting Text Z = 2Γ 2+ + Γ + Γ [1]

Other Cells. Hormones. Viruses. Toxins. Cell. Bacteria

Chemistry 102 Spring 2016 Discussion #12, Chapter 17 Student name TA name Section. Things you should know when you leave Discussion today: ( G o f

Problem Set. Assigned October 18, 2013 Due Friday, October 25, Please show all work for credit

Worksheet 5.2. Chapter 5: Energetics fast facts

Exam Thermodynamics 12 April 2018

Chapter 5. Simple Mixtures Fall Semester Physical Chemistry 1 (CHM2201)

UC Berkeley. Chem 130A. Spring nd Exam. March 10, 2004 Instructor: John Kuriyan

Chapter 10 Liquids, Solids and Phase Changes

OCR Chemistry A H432

Microcalorimetry for the Life Sciences

Chirascan 6-Cell Peltier Cell Holder: Rapid Optimisation of Buffer Conditions for Stabilising Protein Therapeutics

The energy of oxidation of 11 g glucose = kj = kg/m 2 s 2

General Chemistry revisited

Saturday Study Session 1 3 rd Class Student Handout Thermochemistry

Free energy, electrostatics, and the hydrophobic effect

7/19/2011. Models of Solution. State of Equilibrium. State of Equilibrium Chemical Reaction

Thermodynamic Studies of Some Symmetrical Electrolyte s Solution in Aqueous-Organic Solvent Mixtures

General Chemistry I Concepts

Disorder and Entropy. Disorder and Entropy

Chapter 19 Chemical Thermodynamics Entropy and free energy

This is an author-deposited version published in: Eprints ID: 5748

Recap of Lecture #13: Thermodynamics III

Thermodynamics. Entropy and its Applications. Lecture 11. NC State University

Thermodynamics. For the process to occur under adiabatic conditions, the correct condition is: (iii) q = 0. (iv) = 0

For more info visit

Transcription:

Electronic Supplementary Material (ESI) for New Journal of Chemistry. This journal is The Royal Society of Chemistry and the Centre National de la Recherche Scientifique 2014 Supplimentary Informations A comparative study of the Hofmeister series of anions of the ionic salts and ionic liquids on the stability of α-chymotrypsin Awanish Kumar, Anjeeta Rani and Pannuru Venkatesu* Department of Chemistry, University of Delhi, Delhi 110 007. Table 1S. Transition temperature ( ), enthalpy change (ΔH) and heat capacity change (ΔC p ) determined by fluorescence spectroscopy and calculated Gibbs free energy changes (ΔG u ) in unfolding state at 25 0 C for the α-chymotrypsin (CT) in various concentrations of ionic liquids (ILs) a. Sample ( º C) ΔH ΔG u ΔC p K -1 Pure CT in buffer 53.1 69.50 3.03 2.36 0.01 M [Bmim][SCN] 52.1 69.24 2.44 2.92 0.02 M [Bmim][SCN] 49.4 65.40 2.03 3.09 0.03 M [Bmim][SCN] 47.9 50.43 1.69 2.22 0.04 M [Bmim][SCN] 45.0 39.09 1.51 1.52 0.01 M [Bmim][HSO 4 ] 52.6 44.48 1.35 2.14 0.02 M [Bmim][HSO 4 ] 51.4 38.34 1.39 1.58 0.03 M [Bmim][HSO 4 ] 45.5 37.86 1.78 1.23 0.04 M [Bmim][HSO 4 ] 42.0 35.57 2.03 0.96 0.01 M [Bmim][Cl] 57.6 94.24 4.725 2.74 0.02 M [Bmim][Cl] 55.5 89.58 4.22 2.79 0.03 M [Bmim][Cl] 54.6 85.95 3.94 2.77 0.04 M [Bmim][Cl] 54.0 83.25 3.74 2.74 0.01 M [Bmim][Br] 58.3 71.10 3.63 2.02 0.02 M [Bmim][Br] 57.2 71.09 3.52 2.09 0.03 M [Bmim][Br] 56.9 69.40 3.41 2.10 0.04 M [Bmim][Br] 54.0 69.73 3.13 2.29 0.01 M [Bmim][CH 3 COO] 59.6 83.74 4.43 2.29 0.02 M [Bmim][CH 3 COO] 56.4 82.03 3.97 2.48 0.03 M [Bmim][CH 3 COO] 55.8 79.03 3.76 2.44 0.04 M [Bmim][CH 3 COO] 55.5 76.16 3.59 2.37 0.01 M [Bmim][I] 49.6 43.78 1.45 1.95 0.02 M [Bmim][I] 46.8 45.74 1.41 2.17 0.03 M [Bmim][I] 42.0 35.33 1.55 1.22 0.04 M [Bmim][I] 34.0 21.08 2.31 3.10 a Each Value is the average over three measurements. The error in doesnot exceeds 0.1 o C. The estimated relative uncertainties in (ΔH), (ΔC p ) and (ΔG u ) are around 2% of the reported values.

Table 2S. Transition temperature ( ), enthalpy change (ΔH) and heat capacity change (ΔC p ) determined by fluorescence spectroscopy and calculated Gibbs free energy changes (ΔG u ) in unfolding state at 25 0 C for the α-chymotrypsin (CT) in various concentrations of ionic salts (Is) a. Sample ( º C) ΔH ΔG u ΔC p K -1 Pure CT in buffer 53.1 69.50 3.03 2.36 0. 01 M NaSCN 48.5 36.70 1.35 1.50 0. 02 M NaSCN 47.3 35.99 1.26 1.55 0. 03 M NaSCN 46.4 34.38 1.16 1.57 0. 04 M NaSCN 46.2 32.87 1.10 1.49 0. 01 M Na 2 SO4 52.7 35.40 1.52 1.22 0. 02 M Na 2 SO4 50.1 36.16 1.42 1.38 0. 03 M Na 2 SO4 45.7 34.70 1.13 1.62 0. 04 M Na 2 SO4 45.0 34.38 1.09 1.66 0.01 M NaCl 47.0 34.89 1.21 1.53 0.02 M NaCl 45.2 32.55 1.04 1.55 0.03 M NaCl 44.8 30.69 0.96 1.50 0.04 M NaCl 43.6 30.30 0.98 1.58 0.01 M NaBr 52.1 37.86 1.60 1.34 0.02 M NaBr 52.0 37.07 1.56 1.31 0.03 M NaBr 51.0 31.84 1.29 1.17 0.04 M NaBr 49.5 29.23 1.12 1.14 0. 01 M NaCH 3 COO 48.0 35.54 1.28 1.48 0. 02 M NaCH 3 COO 46.7 34.83 1.19 1.55 0. 03 M NaCH 3 COO 46.7 33.97 1.16 1.51 0. 04 M NaCH 3 COO 44.5 33.57 1.04 1.66 0.01 M NaI 51.6 38.36 1.60 1.37 0.02 M NaI 51.0 38.09 1.54 1.40 0.03 M NaI 48.4 38.64 1.35 1.51 0.04 M NaI 46.2 34.04 1.14 1.55 a Each Value is the average over three measurements. The error in doesnot exceeds 0.1 o C. The estimated relative uncertainties in (ΔH), (ΔC p ) and (ΔG u ) are around 2% of the reported values.

Fluorescence Spectroscopy Cary Eclipse spectrofluorimeter from Varian optical spectroscopy instruments, Mulgrave, Victoria, Australia was used to monitor the fluorescence emission spectra of CT that was equipped with thermostated cell holders. The steady-state fluorescence measurements were conducted at a constant temperature using a circulating water bath controlled by a UV1007M192 Peltier device attached to the sample holder of the fluorimeter. The excitation wavelength was set at 295 nm in order to calculate the contribution of the tryptophan (Trp) residues to the overall fluorescence emission. The experiments were carried out in the range between 20 to 90 0 C by using a 1.0 cm sealed cell and both excitation and emission slit width were set at 5 nm. The fluorescence intensity at the emission maximum for the native enzyme (~332 nm) was continuously recorded as the temperature was decreased from 20 to 90 0 C at an approximate rate of 1.0 0 C/min. This allowed the samples to attain thermal equilibrium before the measurements. Thermodynamic analysis of proteins from the fluorescence curves The unfolding of proteins has been observed to approach closely a two-state folding mechanism experimentally such as that shown in equation 1. Folded Unfolded (1) Experimentally, the fraction of unfolded molecules is measured by the intensity of the emission. The fraction unfolded is determined as (2) α = [U] ([F] + [U]) α = (I f - I) (I f - I u ) In an equation, α is the fraction of unfolded molecules, I is the measured intensity at a given temperature, I f is the measured intensity of the folded state, and I u is the intensity of the completely unfolded state. The transition temperature of the protein ( ) is the temperature at which α = 0.5. The importance as well as the details of obtaining the thermodynamic parameters such as free energy change of unfolding (ΔG u ), enthalpy changes (ΔH), and heat capacity change (ΔC p ) through fluorescence thermal analysis is recently elucidated elsewhere. 1-4 (3)

The equilibrium constant (K eq ) between the native and the denatured states at a given temperature was obtained using the following equation K eq = α 1 α (4) The difference in free energy between the denatured and the native conformations (ΔG) can then be calculated using the equation as below, ΔG = RTl nk eq (5) Where, R is the gas constant (1.987 Cal mol -1 ) and T is the absolute temperature. The entropy changes (ΔS) were calculated using the laws of thermodynamics; we have a relation as shown through a relation as below, ΔS = [ ( G) T ]P (6) And therefore, ΔS (at ) = ΔS m = the slope of ΔG vs T. ΔH is needed at only a single temperature, and the best temperature to use is, the midpoint of the thermal unfolding curve where K eq = 1.Therefore, at the free energy change can be termed as (ΔG( )) and can be expressed as below, ΔG( ) = 0 = ΔH c T c ΔS c (7) Now the ΔH m = ( in K) (slope at ). Additionally, the heat capacity change was obtained as shown below, S = C P ln ( /T s ) (8) Where, T s is referred to as the standard temperature at which the stability of the protein is maximum. The obtained values were used to calculate the ΔG of unfolding at any temperature T, using Gibbs Helmholtz equation as shown below, G (T) = H m [ ( 1 T )] P[ C ( T) + T ln ( T )] (9)

References: 1. P. L. Privalov, Crit. Rev. Biochem. Mol. Biol., 1990, 25, 281-306. 2. P. L. Privalov, Y. V. Griko, S. Y. Venyaminov, J. Mol. Biol. 1986, 190, 487-498. 3. S. N. Baker, T. M. McCleskey, S. Pandey, G. A. Baker, Chem. Commun. 2004, 940-941.