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SUPPLEMENTARY INFORMATION Coupling of Plasmonic Nanopore Pairs: Facing Dipoles Attract Each Other Takumi Sannomiya 1, Hikaru Saito 2, Juliane Junesch 3, Naoki Yamamoto 1. 1 Department of Innovative and Engineered Materials, Tokyo Institute of Technology, 226-8503, Yokohama, Japan. 2 Center of Advanced Instrumental Analysis, Kyushu University, 816-8580, Kasuga, Japan. 3 Department of Physics, Chalmers University of Technology, 41296 Gothenburg, Sweden. Dispersion Relation The dispersion relation of the guided wave mode in the used multilayer system is calculated using MATLAB (Mathworks). The eigenmodes are numerically solved in the complex plane so that the determinant of the boundary condition matrix is minimized (Figure S1). 1 We chose the bonding (short-range) mode since this mode is dominantly excited with the fast electron beam in scanning transmission electron microscopy. 2 Figure S1 Mode mapping example of the AlN(8 nm)/au(16 nm)/aln(8 nm) trilayer system as a function of the complex mode wavenumber. Modes are found as minima. The dispersion relations can also be plotted in the units of vacuum wavelength (energy) and mode wavelength (wavenumber), which can be more easily compared with the spectra and

geometry of the system. Figure S2 shows such dispersion plots of AlN(8 nm)/au(16 nm)/aln(8 nm) system for the isolated nanopores and of AlN(10 nm)/au(12 nm)/aln(6 nm) for the SRO nanopores. Figure S2 Dispersion relation (blue line) of AlN(8 nm)/au(16 nm)/aln(8 nm) system (left panel) and AlN(10 nm)/au(12 nm)/aln(6 nm) system (right panel), in the units of vacuum wavelength (x axis), corresponding to the energy, and mode wavelength (y axis), corresponding to the wavenumber. Propagation length (red) is also added. The bonding film SP (short-range) modes are chosen. Extracted Spectra Extrated spectra from Figure 2 in the main text are shown in Figure S3. The signals are averaged over 30-40 nm in space around the maximum intensity position. The outer- and inner-edge modes are also averaged over both sides. The center mode was extracted in the middle of the two holes. The peak positions shown in Figure 3 are evaluated from the second order polynomial fit. The errors are estimated from different fitting ranges. Figure S3 Extracted spectra at outer edges, inner edges, and centers are shown. The dominant modes are shown by arrows, corresponding to the anti-symmetric outer-edge, anti-symmetric inner-edge and symmetric modes (from left to right).

Comparison with Far-Field Coupling If the inner edge bright mode is coupled through far-field surface plasmon wave, the bright mode resonance might be explained by edge-to-edge resonance, which would occur when the edge-toedge length and a half of the SP wavelength match. 3 Figure S4 shows a comparison of the inner edge bright modes and the half SP wavelength. This clearly shows the inner edge resonance mode and the SP half wavelength do not match. Therefore, it confirms the coupling is mediated through near-field rather than propagating SP. Figure S4 Comparison of the inner bright mode resonance and SP half wavelength. FDTD Simulation Details Finite difference time domain (FDTD) method simulations were performed using the CrystalWave software package (Photon Design). We used plane wave excitation and measured the local field intensity, which is reciprocal to the CL measurement. Note that the performed simulation is mainly to analyze the modes and not perfectly emulating CL measurement. Dipole excitation emulating the electron beam excitation is possible, however, this requires proper optimization of the height of the dipole and refinement of the grid, and its computational load can become extremely heavy especially for mapping. To reduce the computational load we used slightly modified geometry namely AlN(5 nm)/au(15 nm)/aln(5 nm) trilayer membrane with 140 nm nanopores in the vacuum medium. The calculation space was set as 2500 nm 2500 nm 1425 nm, which has been reduced based on the symmetry by properly placing perfect electric conductor (PEC) and perfect magnetic conductor (PMC) boundary. Perfectly matched layers (PML) were set around the calculation space to avoid reflection. The pore (or the pore pair) was set in the middle of the calculation space. Cubic calculation cells were set in the size of 5 nm 5 nm 5 nm. For the dielectric constants of AlN, a constant value of 2.1 was used. For gold, the following Lorentz model with two oscillators was adopted:

Au 1 m 2 m A m 2 i m. (S1) The used parameters are listed in Table S1, which reproduces the literature value of Palik. 4 Table S1 A m ω m Γ m m = 1 7 3.802 10 THz 2 4.593 10 3 THz 2 6.989 10 THz m = 2 7 8.692 10 THz 2 1.646 10 3 THz 2.718 10 THz The inner and outer bright modes were excited by normal incident light. The dark mode was excited by oblique incident light with the incident angle of 30 from normal. The excitation pulse width was 5 fs for spectrum acquisition. The field detectors of 20 nm 20 nm were located 20 nm below the inner and outer edges, and middle of the two pores for the inner bright mode, outer bright mode, and the dark mode, respectively. The fields detected from 10 to 30 fs were used for the calculation of the spectra, when the field of the excitation pulse does not directly influence the result. This timing is before small portion of the reflected SP, which has not been perfectly absorbed in PML, arrives at the nanopore structure. For field mapping, the pulse width and the central frequency were adjusted so that the dominant frequency of the pulse matches the target resonance wavelength. Static Dipole-dipole Interaction The energy of two static dipoles coupled through vacuum can be expressed through Coulomb interaction: { }, (S2) where r and represent the distance vector between the dipoles and each dipole moment vector. For the transverse coupling, the Coulomb energy of both parallel and anti-parallel modes is proportional to the inverse of r 3. Assuming the perfect electric conductor and Babinet s inverse principle with thick film approximation, our fitting function for the coupled pores using the gap distance g becomes:, (S3) where interaction parameter A, energy offset B, and distance offset d are the fitting parameters. We used common B values both for dark and bright modes, which roughly correspond to the single mode energy.

Far Field Pattern of a Single Nanopore Figure S5 shows the far field patterns of a single nanopore (upper row), as plotted in Figure 4 of the main text. To compare with a simple electric dipole, we plotted fields created by a single electric dipole (Figure S4 lower row). The far field of the nanopore corresponds well to that of the electric dipole, confirming that a single nanopore can be well considered as a dipole. Some interference with near field is slightly visible which is due to the limited calculation space. Figure S5 Comparison of the far field patterns of simulated nanopore (upper row) and those of a 3D electric dipole (lower row). The simulated field patterns are extracted from a plane 0.5 m above the film. The nanopore location is indicated by green circle at the top right of each pattern. The dipole position corresponds to the center of the pore (origin: top right). Comparison of Experiment and FDTD Simulation In Figure S6 both simulated and experimental resonance wavelengths are plotted in the same graph. The simulation fairly well matches with the experimental results. The fitted curves are only for the experiment. It is noted that the simulated dark modes for larger gap sizes have too weak and broad resonances to determine the resonance wavelength accurately. The error for the simulated points are estimated as, where and I stand for the background slope due to the excitation pulse and intensity of the spectrum respectively. The actual error, however, should also include the dissipation of the modes, which cannot be properly included for this simulation analysis. In Figure S7, we also compare the intensities of the resonance peaks obtained from the experiment and simulation. The gap dependent tendencies of the experiment and simulation qualitatively match for all the observed modes. The behavior of the observed modes are summarized in Table S2

Figure S6 Comparison of the resonance wavelengths from the experiment and simulation. The simulated dark modes for larger gap sizes are erroneous because of too weak and broad resonances. Figure S7 Comparison of the resonance intensities of the experimental and simulation spectra. Table S2 : Summary of the coupling behaviors anti-symmetric symmetric modes inner-edge outer-edge center dipolar interaction repulsive weakly repulsive weakly attractive energy > >

Localized Gap Mode To confirm the localized inner edge mode for the coupled pores, we simulated structures consisting of two long slits as shown in Figure S8. The slit thickness is same as the diameter of the simulated pores. With this structure, only the inner edge mode exists and the outer edge can be excluded. With this structure, we also observed similar mode with similar behaviors as the inner edge mode of the coupled pores. The field pattern of the 50 nm gap at the resonance wavelength is also similar to the coupled pores. Figure S8 Simulation of the extracted gap model consisting of two long slits. E z field pattern is for the resonance of the 50 nm gap, as shown by the arrow. Outer Edge Dipole and Slit Modes The outer edge bright mode of coupled pores is compared with a single slit of the same size. With this single slit structure, the influence of the inner edge mode can be neglected. As shown in Figure S9, the single slit closely resembles the outer edge coupling mode.

Figure S9 Comparison by simulation of the outer edge coupling mode for 50 nm gap distance and a single slit with the same edge-to-edge size. Insets: the field patterns of the slit for two resonances. CL and Optical Extinction of Short-Range Ordered (SRO) Nanopore Arrays The optical extinction and the averaged CL spectra in Figure S10 show a good match of the resonance, indicating that the optical and CL detection can be approximately interpreted in the same way. 5 The slight difference may stem from the different origin of the signals, namely scattering for CL and scattering + absorption for extinction. However the portion of the absorption does not significantly affect the resonance wavelength, as discussed below. Figure S10 Comparison of CL and optical extinction spectra of SRO arrays. AlN(10 nm)/au(10 nm)/aln(6 nm) membrane with 120 nm pores are used. The CL sepctrum is averaged over 10 10 m area. To compare the portion of absorption with extinction, we performed numerical simulation. Figure S11 shows the simulated spectra of a hexagonally arranged nanopore array. Similar geometry to the measured SRO array was used, namely AlN(10nm)/Au(10nm)/AlN(6nm)

membrane, 100 nm pore size, and 230 nm periodicity. The characteristic distance for the measured SRO nanopore array was about 200 nm, which corresponds well to the interference length of the simulated structure. 6 Both extinction and absorption spectra show resonance at similar wavelengths. For the nanopore array simulation we used the OpenMaXwell simulation package. 7 Figure S11 Simulated extinction and absorption spectra of a nanopore array in an AlN(10 nm)/au(10 nm)/aln(6 nm) membrane. The pore size is 100 nm and the periodicity is 230 nm. Plane wave excitation was applied to calculate the spectra. CL Mapping for Inner- and Outer-Edge Modes To distinguish the inner- and outer- edge mode more clearly, we prepared a larger pore pairs (320 nm in diameter) in a AlN(5 nm)/au(20 nm)/aln(5 nm) trilayer film. As shown in Figure S12, the inner-edge mode is observed around 600 nm, and the outer-edge mode around 810 nm. The symmetric mode is not observable in the measurable range. Figure S12 CL mapping of a pore pair in a AlN(5 nm)/au(20 nm)/aln(5 nm) membrane. The pore size is about 320 nm. Polarization is set horizontally in the figure.

Electron Energy Loss Spectroscopy We used EELS to support CL measurement. For EELS measurement, a FEI Titan Cubed G2 60-300 with a Schottky field emission electron source, monochrometer, Cs-corrector and Gatan Quantum energy filter was used. The acceleration was set at 300 kv and the energy resolution to 0.15 ev (FWHM of the zero-loss peak). The EELS mapping intensity was normalized by zeroloss intensity. The EELS mapping and extracted spectra are shown in Figure S13. The measured pores have same dimension as those in the main text although the sample batch is different and can have some thickness/size deviations. The extracted inner-edge mode mapping around 2.0-2.2eV is calculated by approximate subtraction of the background : I = Average[2.0-2.2 ev] (Average[1.9 2.0 ev]+ Average[2.3 2.4 ev]) / 2 Figure S13 EELS mapping of a nanopore pair in a AlN(8 nm)/au(16 nm)/aln(8 nm) membrane with the gap distance of 55 nm. The pore size is about 135 nm. (a) STEM-ADF image, (b-e) EELS mappings of the shown energy loss range, and (f) extracted signal of 2.0-2.2eV range. The EELS mapping signals are normalized by the zero-loss intensity. References 1 Ikenoya Y, Susa M, Shi J, Nakamura Y, Dahlin AB, Sannomiya T. Optical Resonances in Short- Range Ordered Nanoholes in Ultrathin Aluminum/Aluminum Nitride Multilayers. J Phys Chem C 2013; 117: 6373 6382.

2 Pettit RB, Silcox J, Vincent R. Measurement of surface-plasmon dispersion in oxidized aluminum films. Phys Rev B 1975; 11: 3116 3123. 3 Alaverdyan Y, Sepúlveda B, Eurenius L, Olsson E, Käll M. Optical antennas based on coupled nanoholes in thin metal films. Nat Phys 2007; 3: 884 889. 4 Palik ED. Handbook of Optical Constants of Solids. Academic Press, 1998. 5 Kociak M, Stéphan O, Gloter A, Zagonel LF, Tizei LHG et al. Seeing and measuring in colours: Electron microscopy and spectroscopies applied to nano-optics. Comptes Rendus Phys 2014; 15: 158 175. 6 Junesch J, Sannomiya T. Ultrathin Suspended Nanopores with Surface Plasmon Resonance Fabricated by Combined Colloidal Lithography and Film Transfer. ACS Appl Mater Interfaces 2014; 6: 6322 6331. 7 OpenMaXwell. http://openmax.ethz.ch/.