Part IV : 2-Dimensional Chiral Effect of the Organic Molecule on the Configuration of Organic Self-assembly on the Reactive Metal Surface.

Similar documents
Wolf-Dieter SCHNEIDER EPF de Lausanne, IPN CH-1015 Lausanne, Switzerland. the abdus salam international centre for theoretical physics SMR

Single-Molecule Recognition and Manipulation Studied by Scanning Probe Microscopy

Substrate-induced supramolecular ordering of functional molecules: theoretical modelling and STM investigation of the PEBA/Ag(1 1 1) system

Curriculum Vitae December 2006

Deprotonation-Driven Phase Transformations in Terephthalic Acid Self-Assembly on Cu(100)

CHAPTER 5. FORMATION OF SAMs CONRTOLLED BY STERIC EFFECTS. The steric effect is an important subject in chemistry. It arises from the fact that

1. Robust hexagonal rings on Cu(111) Figure S1 2. Details of Monte Carlo simulations

Molecular and carbon based electronic systems

2D surface confined nanoporous molecular networks at the liquid-solid interface: a scanning tunneling microscopy study

Self-Assembled Monolayers

Department of Chemistry, Princeton University, Princeton, NJ 08544, USA

Role of Thermal Process on Self-Assembled Structures of 4'-([2,2':6',2''-Terpyridin]-4'-Yl)-[1,1'-Biphenyl]-4-Carboxylic Acid on Au(III)

Coverage-Dependent Water Agglomerates on Fe 3 O 4 (001):

Molecular Dynamics on the Angstrom Scale

Electron tunneling through alkanedithiol molecules

This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and

Steering on-surface polymerization with metal-directed template

Size-selected Metal Cluster Deposition on Oxide Surfaces: Impact Dynamics and Supported Cluster Chemistry

Low Temperature (LT), Ultra High Vacuum (UHV LT) Scanning Probe Microscopy (SPM) Laboratory

Influence of lauric Acid on the Adsorption of 12-Bromododecanoic Acid at the Liquid Solid Interface as Studied by STM

VCD SPECTROSCOPIC STUDIES ON INTERMOLECULAR INTERACTIONS:

Mater. Res. Soc. Symp. Proc. Vol Materials Research Society

From manipulation of the charge state to imaging of individual molecular orbitals and bond formation

Lecture 30: Kinetics of Epitaxial Growth: Surface Diffusion and

Formation of Halogen Bond-Based 2D Supramolecular Assemblies by Electric Manipulation

240 Chem. Aromatic Compounds. Chapter 6

Some questions and answers that we will get out of this example synthesis:

1051-3rd Chem Exam_ (A)

1051-3rd Chem Exam_ (B)

1051-3rd Chem Exam_ (C)

Supplementary Materials for

Properties of Individual Nanoparticles

Some questions and answers that we will get out of this example synthesis:

Interplay of hydrogen bonding and aryl-perfluoroaryl interactions in construction of supramolecular aggregates

Homework - Review of Chem 2310

Advanced Organic Chemistry

Cross-Section Scanning Tunneling Microscopy of InAs/GaSb Superlattices

Lecture 22 Organic Chemistry 1

C. D. Lee and R. M. Feenstra Dept. Physics, Carnegie Mellon University, Pittsburgh, PA 15213

Self-Assembly of Two-Dimensional Organic Networks Containing Heavy Metals (Pb, Bi) and Preparation of Spin-Polarized Scanning Tunneling Microscope

Microscopical and Microanalytical Methods (NANO3)

Basic Organic Chemistry Course code : CHEM (Pre-requisites : CHEM 11122)

Water clustering on nanostructured iron oxide films

Reactions. Reactions. Elimination. 2. Elimination Often competes with nucleophilic substitution. 2. Elimination Alkyl halide is treated with a base

Supporting Online Material for

Zhang et al. Page 1. 1 Supporting Information. Thermal Curing of Self-Assembled Monolayer at the Nanoscale

Repeated insertion. Multiple insertion leads to dimerization, oligomerization or polymerization. κ 1: mainly dimerization κ

Kinetics and Functionality of Cu-coordinated Pyridyl-porphyrin Supramolecular Self-assembly on a Au(111) Surface

Crystal structure of DL-Tryptophan at 173K

POSS for Surface Modification and and Corrosion Prevention

Supplementary Figure 1 Experimental setup for crystal growth. Schematic drawing of the experimental setup for C 8 -BTBT crystal growth.

1 Corresponding author:

Scanning Tunneling Microscopy. how does STM work? the quantum mechanical picture example of images how can we understand what we see?

Supporting Information

Surface structure vs. surface science; Atomic imaging of surface with STM; Nanoscale surface probing with STM; Exploration of surface catalysis.

Scanning Tunneling Microscopy (STM)

On surface synthesis of a 2D boroxine framework: a route to a novel 2D material?

Porphyrin Self-Assembly at Electrochemical Interfaces: Role of Potential Modulated Surface Mobility

Drawing Good Lewis Structures. Molecular Shape

Catalyst structure and C-O activation during FTS: new ideas from computational catalysis. Mark Saeys

Scanning tunneling microscopy studies of the TiO surface: Structure and the nucleation growth of Pd

Tuning magnetic anisotropy, Kondo screening and Dzyaloshinskii-Moriya interaction in pairs of Fe adatoms

One-Dimensional Self-Assembled Molecular Chains on Cu(100): Interplay between Surface-Assisted Coordination Chemistry and Substrate Commensurability

Elimination. S N 2 in synthesis. S N 2 and E2. Kinetics. Mechanism bimolecular

Catalysis by supported metal clusters and model systems

Studying Metal to Insulator Transitions in Solids using Synchrotron Radiation-based Spectroscopies.

Pd-Fe bimetallic catalysts have been widely studied in

Molecular interaction between nucleic acid bases and amino

PCCP PAPER. Hierarchical formation of Fe-9eG supramolecular networks via flexible coordination bonds. Introduction

The basics of Scanning Probe Microscopy

Synthesis of Polymers Prof. Paula Hammond Lecture 19: Metallocene Chemistry, Intro to New Developments from Brookhart, Others H H

Supplementary Materials for Oxygen-induced self-assembly of quaterphenyl molecule on metal surfaces

Interdisciplinary Nanoscience Center University of Aarhus, Denmark. Design and Imaging. Assistant Professor.

Lecture February 8-10, NiCHx

Self assembly of Carbon Atoms in Interstellar Space and Formation Mechanism of Naphthalene from Small Precursors: A Molecular Dynamics Study

SUPPLEMENTARY INFORMATION

Nanostructure. Materials Growth Characterization Fabrication. More see Waser, chapter 2

Long-range adsorbate interactions mediated by a two-dimensional electron gas

Scanning Tunneling Microscopy. Wei-Bin Su, Institute of Physics, Academia Sinica

Nanostructure Fabrication Using Selective Growth on Nanosize Patterns Drawn by a Scanning Probe Microscope

Hydrogen termination following Cu deposition on Si(001)

Construction of Two Dimensional Chiral Networks

AN INTRODUCTION TO MOLECULAR ORBITALS

Surface physics, Bravais lattice

Lecture 12. study surfaces.

Problem with Kohn-Sham equations

Semiconductor Physics and Devices

Quantum wells and Dots on surfaces

Influence of stress on hydrogen-bond formation in a halogenated phthalocyanine network

Imaging Methods: Scanning Force Microscopy (SFM / AFM)

The experimental work seems to be well carried out and the DFT calculations carefully crafted.

Supporting Information for

Enantiospecific Adsorption of (R)-3-Methylcyclohexanone on Naturally Chiral Surfaces Vicinal to Cu(110)

Adsorption and Reactions of Water on the Copper (110) Surface. Studied by Scanning Tunneling Microscopy. Yu Shi

Adsorption of Iodine on Pt(111) surface. Alexandre Tkachenko Marcelo Galván Nikola Batina

Plan for Lectures #4, 5, & 6. Theme Of Lectures: Nano-Fabrication

Mock Test 3 (Organic Chemistry) +2

Single-Molecule Charge Transfer and Bonding at an Organic/Inorganic Interface: Tetracyanoethylene on Noble Metals

Self-assembly of molecules on surfaces. Manuel Alcamí Departamento de Química Universidad Autónoma de Madrid

Properties of large organic molecules on metal surfaces

Transcription:

Part IV : 2-Dimensional Chiral Effect of the rganic Molecule on the Configuration of rganic Self-assembly on the eactive Metal Surface. Byung-Il Kim Department of Chemistry University of Houston

Motivation of rganic Self-assembly: - Potential anoscale Device - Formation Mechanism in Biology system esearch bjective: - To determine factors influencing the configuration of organic self-assembled nanostructures with High stability. System with High Stability at oom Temperature: - Strong Intermolecular Interaction and adsorbatesubstrate interaction - PVBA/Pd(111)

4-trans-2-(pyrid-4-yl-vinyl) benzoic acid : PVBA - Planar and Stiff - Conjugated System with π-electron - Conjugated Chain - Hydrogen Bonding Head 6.7 Å Tail 12.7 Å H

Intermolecular Interaction:Hydrogen Bonding - Head - Head interaction :Unfavorable - Head - Tail interaction : -10 kcal/mole - Tail - Tail interaction : -15kcal/mole

Substrate: Pd(111) - Size : 1cm dia 1mm -Step height = 2.24Å - Melting Temp: 1550 C -Terrace width:~1000å - Structure : fcc(111) -Defect free surface -..D.: 2.75Å - Most reactive metal of Group 8B(10)

UHV-STM/AFM Surface Analysis System

rganic Molecular Beam Deposition -Deposition of PVBA Pd(111) PVBA < 1 10-10 Torr -Substrate Temp.: T -Deposition Temp. of PVBA: 128 C

STM on PVBA/Pd(111) - inear and Y shape Statistics Dimer ~ 85.0% Trimer ~8.6 % thers ~6.4% It=100pA Vt~1V ( T > 1GW ) at T

Straight Dimer Peaksfiings 11Å ~7Å H H p-conjugate chain fi I t ~ 1Å

Bent Dimer ~ 1Å H H

2-Dimensional chirality High Contrast STM Image - Molecular beam : 2-dimensional racemic mixture. - ot superimposed by translation and rotation

2-Dimensional Chirality Effect on Dimer Shape same chiral symmetry different chiral symmetry

rientation of Dimer ~20 - [011] - : ~ 20 + 60 n - : ~ 40 + 60 n 60 ~40 - [011] rientational Preference of Single PVBA : ~ 20 + 60 n : ~ 40 + 60 n

rientation of Trimer Type A(, ) : ~ 20, ~20 + 120, ~20 + 240 : ~ 40, ~40 + 120, ~40 + 240 Type B(,,,,,) Type B : ~0, ~120, ~240 lattice rows STM Statistics Type A ~ 2.2% Type B ~ 6.4% A : B ~ 1 : 3

Interaction Energy due to verlap between Aromatic ings and Hollow sites d 0 =6.7Å At θ ~ 0 or 60, d=6.92å, d-d 0 / d 0 =3.2% d At θ ~ 20 or 40, d=7.27å, d-d 0 /d 0 =7.8% verlap Interaction E overlap -20 0 20 40 60 80 100120140 Angle(degree)

verall Interaction due to Symmetry and verlap - E symmetry > E overalp to have global minimum at ~40 ( 20 ) + 60 n for ( ) ~40 +60 n - 2 0 0 2 0 4 0 6 0 8 0 1 0 0 1 2 0 1 4 0 x1 x2 ~40 +60 n ~40 +60 n x3-20 0 20 40 60 80 100120140 Angle(degree)

Competition between verlap and Symmetry E tot =1 E symmetry + 3 E overlap 3 E overlap > 1 E symmetry to have a global minimum at ~0 + 60 n ~0 + 60 n -20 0 20 40 60 80 100120 140 Angle(degree) -E symmetry /E overlap 3 for Trimer - E symmetry /E overlap 1 for Dimer 1 E symmetry /E overlap 3 for PVBA/Pd(111)

3x(E symmetry + E overlap ) ~40 +60 n -20 0 20 40 60 80 100120140 Angle(degree) 1xE symmetry + 3xE overlap ~0 + 60 n -20 0 20 40 60 80 100120 140 Angle(degree)

Comparison to other Systems PVBA/Pd (110) Monomers with two distinct orientations J. Weckesser, J. V. Barth, C. Cai, B. Muller and K. Kern, Surf. Sci. 431(1999) 168-173 PVBA/Ag (111) 1-D nano-grating structure J. V. Barth, J. Weckesser, C. Cai, P. Gunter,. Burgi,. Jeandupeux, and K. Kern. Angew. Chem. Int. Ed. 2000, 39, 1230. PVBA on / Pd(111) Intermediate adsorbate-substrate interaction

Manipulation: Two Dimers ne Trimer Scanning direction

Medium Coverage -Self-assembled nanostructure with orientational preference -o preferential growth near the step edge Strong π bonding or weak lateral interaction. -Head-to-Tail bonding

High coverage -Self-assembled chain structures-annealing Effect on rdering Competition between inter-molecular hydrogen bonding and molecules substrate interaction

High coverage H H H H H H H H H H

Conclusions 1. PVBA molecules were deposited on clean Pd(111) to form selfassembled nanostrucutres with organic molecular beam epitaxy system. 2. Dimer and trimer structures formed with strong hydrogen bond strongly depend on molecular chiral symmetry and the substrate orientation. 3. Interaction energy due to molecular symmetry with lattice competes with the one due to overlap between aromatic rings and hollow sites. 4. The orientation and configuration of self-assembly could be modified by applying strong force on single molecules during tip scanning.

Acknowledgement - Prof. Scott S. Perry - Prof. Chengzhi Cai ( PVBA ) - Texas Advanced esearch Program - Air Force ffice of Scientific esearch