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Supplementary Figures Supplementary Figure 1: Region mapping. a Pristine and b Mn-doped Bi 2 Te 3. Arrows point at characteristic defects present on the pristine surface which have been used as markers to map the very same sample region before and after deposition. The white bars correspond to 10 nm. 1

Supplementary Figure 2: Adsorption sites for Co and Mn adatoms. a, b and c, d show the adsorption sites for Co and Mn atoms, respectively. For both elements two adsorption sites have been identified. They correspond to hollow sites of the surface Te layer which are inequivalent with respect to the lattice of the subsurface Bi layer as illustrated in e. Because of the lack of subsurface resolution, an unambiguous assignment of these two features to hcp and fcc hollow sites is not possible. In both cases the corrugation of the adatoms is found to be small, spanning a range of a few tens of pm depending on the scanning parameters. This suggests a strong inward relaxation, consistent with the relative small size of 3d elements compared to the substrate interlattice spacing. The same has been reported to occur for Fe and Co atoms on Bi 2 Se 1,2 3. White bars in a and c correspond to 10 nm, in b and d to 2 nm. 2

Supplementary Figure 3: Assignment of bulk bands. STS spectrum obtained on pristine Bi 2 Te 3. The minimum close to the Fermi level and the shoulder visible at approximately 180 mev correspond to the valence band (VB) maximum and conduction band (CB) minimum, respectively. Assignment of these features was done according to the procedure described in Ref. 3, 4. Compared to Ref. 4, these features are shifted in energy because of different sample doping. Scanning parameters: I = 50 pa, U = -0.3 V. 3

Supplementary Figure 4: STS on adatoms. a, b show STS spectra obtained by positioning the STM tip on top of the Co and Mn adatoms, respectively. Co 1 and Co 2 as well as Mn 1 and Mn 2 refer to the adsorption position. While resonances corresponding to impurity states consistent with theoretical predictions 5 are detected for Co (see black arrows in a), no resonances have been detected for Mn adatoms in energy range of interest. 4

Supplementary Figure 5: FT-QPI on the pristine sample before Mn deposition. di/du maps and their relative FT obtained over the pristine Bi 2 Te 3 region diplayed in Supplementary Figure 1 before Mn deposition. Note that there is no indication for TR symmetry breaking (no scattering intensity in Γ K direction). White bars in di/du-maps correspond to 10 nm, in FT to 2 nm -1. The intensity of the di/du-signal is represented by the color scale with red (black) and blue (white) referring to high and low signal in di/du maps (FTs), respectively. 5

Supplementary Figure 6: Band structure obtained with an extended Fu model. Effect on the band structure of Bi 2 Te 3 for magnetization pointing along x, y and z. 6

Supplementary Figure 7: Spin texture along different magnetization directions. A magnetization of the topological states takes place only for an out-of-plane direction. By moving at higher energies the magnetization progressively disappears as the warping term increases its strength. The scale bar refers to the spin polarization along the magnetization direction with blue and red corresponding to opposite spin. 7

Supplementary Note 1 Modeling magnetic impurities The influence of the magnetic moments present on the surface of Bi 2 Te 3 has been described by an extended Fu model 6 : H = v k ( k x σ y k y σ x ) + λ ( k 3 + + k 3 ) σ z J S, where v k is the velocity, k ± = (k x ± ik y ) and J S models the interaction of the electron spin with the moment S introduced by the magnetic atoms. As shown in Supplementary Ref. 7, such a model can reproduce the results obtained by ab-initio calculations. Its simplicity helps to understand the properties of topological states interacting with magnetic moments. Supplementary Figure 6 shows the effect of a magnetic term pointing along x, y, and z directions. x and y are two inequivalent in-plane directions which result from the C3v symmetry of the crystal, which consists of a threefold symmetry along the direction z perpendicular to the surface and a reflection at the yz plane for which the following relation holds: x -x with x pointing along the Γ-K direction. A gap opening at the Dirac point is clearly visible only when the magnetization is pointing outof-plane, but not for in-plane magnetizations. Note that the x and y directions are not equivalent. While the Dirac point stays intact for a magnetization pointing along x, a tiny gap (approximately 80 times smaller than that observed along z) opens along y as highlight in the inset. This is the result of the above mentioned symmetry operations: a magnetic term pointing along x preserves mirror symmetry on the yz plane while one pointing along y does not. The resulting spin texture of the topological state is illustrated in Supplementary Figure 7. An inplane magnetization leaves the spin texture essentially identical to the pristine case. On the other hand, for a magnetization pointing along z, the spin texture is substantially altered and a magnetization of the topological state appears, which progressively vanishes by moving towards higher energies, where the strength of the warping term increases. 8

Supplementary References 1. Honolka, J. et al. In-Plane Magnetic Anisotropy of Fe Atoms on Bi 2 Se 3 (111). Phys. Rev. Lett. 108, 256811 (2012). 2. Eelbo, T. et al. Co atoms on Bi 2 Se 3 revealing a coverage dependent spin reorientation transition. New J. Phys. 15, 113026 (2013). 3. Alpichshev, Z. et al. STM Imaging of Electronic Waves on the Surface of Bi2Te3: Topologically Protected Surface States and Hexagonal Warping Effects. Phys. Rev. Lett. 104, 016401 (2009). 4. Hor, Y. S. et al. Development of ferromagnetism in the doped topological insulator Bi 2- xmn x Te 3, Phys. Rev. B 81, 195203 (2010). 5. Biswas, R. R. & Balatsky, A. V. Impurity-induced states on the surface on the surface of three-dimensional topological insulators. Phys. Rev. B 81, 233405 (2010). 6. Fu, L. Hexagonal Warping Effects in the Surface States of the Topological Insulator Bi 2 Te 3. Phys. Rev. Lett. 103, 266801 (2009). 7. Henk, J. et al. Topological Character and Magnetism of the Dirac State in Mn-Doped Bi 2 Te 3. Phys. Rev. Lett. 109, 076801 (2012). 9