Integral Equation and PDE Neuronal Models:

Size: px
Start display at page:

Download "Integral Equation and PDE Neuronal Models:"

Transcription

1 Integral Equation and PDE Neuronal Models: W. C. Troy Integral Equation and PDE Neuronal Models: p.1/51

2 Part 1. 1D Single Neuron Models. (i) Hodgkin-Huxley (1952), Fitzhugh-Nagumo (1961) Part 2. 1D and 2D Integral Eq. Models (i) 1D and 2D Bump Solutions and Waves Part 3. Synchrony (i) Bulk Oscillations. (ii) 1D Synchrony and 2D Synchrony Integral Equation and PDE Neuronal Models: p.2/51

3 Part 1: 1D models A. L. Hodgkin and A. F. Huxley, J. Phys. (1952) a 2R I = g k n 4 (V V k ) + G Na m 3 h(v V Na ) + g l (V V l ) + I 0 2 V x 2 V = C m t + I n t = α n (V )(1 n) β n (V ) m = α m (V )(1 n) β m (V ) t h t = α h (V )(1 n) β h (V ) V = transmembrane voltage; n, m, h are dimensionless quantitites associated with potsssium channel activation, sodium channel activation and sodium channel inactivation. Integral Equation and PDE Neuronal Models: p.3/51

4 Voltage Clamp Hodgkin and Huxley set I 0 = 0 and inserted a silver wire along the interior of the giant axon of the squid Loligo. Experiments on the voltage clamped axon allowed them to determine the functions and parameters in the equations: dv C m dt n t m t h t = g k n 4 (V V k ) + G Na m 3 h(v V m ) + g l (V V l ) = α n (V )(1 n) β n (V ) = α m (V )(1 n) β m (V ) = α h (V )(1 n) β h (V ) There is a unique rest state (V,m,n,h) (V 0,m 0,n 0,h 0 ) Integral Equation and PDE Neuronal Models: p.4/51

5 ( ).1(V 10) V α n (V ) = exp ( ), β V 10 n (V ) =.125 exp ( ).01(V 25) V α m (V ) = exp ( ), β V 25 m (V ) = 4 exp ( ) V 1 α h (V ) =.07 exp, β h (V ) = 20 exp ( ) V Integral Equation and PDE Neuronal Models: p.5/51

6 Traveling Waves Let (V,m,n,h) = (V (z),m(z),n(z),h(z)), z = x ct, and solve a 2R I = g k n 4 (V V k ) + G Na m 3 h(v V Na ) + g l (V V l ) + I 0 d 2 V dz 2 dv = cc m dz + I dn dt = α n (V )(1 n) β n (V ) dm = α m (V )(1 n) β m (V ) dt dh dt = α h (V )(1 n) β h (V ) lim (V (z),m(z),n(z),h(z)) = (V 0,m 0,n 0,h 0 ) z ± Integral Equation and PDE Neuronal Models: p.6/51

7 Proofs (1) S. P. Hastings, "On travelling wave solutions of the Hodgkin-Huxley equations," Archive for Rational Mechanics, 60 (1976), (2) G. A. Carpenter, "A geometric approach to singular perturbation problems with applications to nerve impulse equations." Journal of Differential Equations, 23 (3) (1977), (3) G. A. Carpenter, "Periodic solutions of nerve impulse equations." Journal of Mathematical Analysis and Applications, 58(1) (1977), (4) G. A. Carpenter, "Bursting phenomena in excitable membranes." SIAM Journal on Applied Mathematics, 36 (1979), Integral Equation and PDE Neuronal Models: p.7/51

8 Open Problems: (a) prove that there is a second traveling wave solution satisfying a 2R I = g k n 4 (V V k ) + G Na m 3 h(v V Na ) + g l (V V l ) + I 0 d 2 V dz 2 dv = cc m dz + I dn dt = α n (V )(1 n) β n (V ) dm = α m (V )(1 n) β m (V ) dt dh dt = α h (V )(1 n) β h (V ) lim (V (z),m(z),n(z),h(z)) = (V 0,m 0,n 0,h 0 ) z ± (b) Prove (based on numerical studies) that the second solution is unstable. Integral Equation and PDE Neuronal Models: p.8/51

9 Fitzhugh-Nagumo Model The Fitzhugh-Nagumo System (1961) was derived as a simplification of the Hodgkin-Huxley model. u t w t = 2 u x 2 + u(u a)(1 u) + w + I 0 = b(u γw) u = transmembrane voltage; w = recovery variable. (1) R. FitzHugh, "Impulses and physiological states in theoretical models of nerve membrane." Biophysical J. 1 (1961), (2) J. Nagumo, S. Arimoto and S. Yoshizawa, "An active pulse transmission line simulating nerve axon." Proc. IRE. 50 (1962), Integral Equation and PDE Neuronal Models: p.9/51

10 Traveling Waves Let I 0 = 0 and (u,v) = (u(z),v(z)), z = x ct, and solve c du dz w t = d2 u + u(u a)(1 u) + w dz2 = b(u γw) lim (u(z),v(z)) = (0, 0) z ± (1) S. P. Hastings, "On the existence of homoclinic and periodic orbits for the FitzHugh-Nagumo equations," The Quart. J. Of Math., (1976), Oxford Univ. Press (2) S. P. Hastings, "Single and Multiple Pulse Waves for the FitzHugh-Nagumo Equation,", SIAM J. Appl. Math 42 (1982), Integral Equation and PDE Neuronal Models: p.10/51

11 Stability of Wave Fronts General problem: u t = u xx + f(u), < x < f(0) = f(1) = 0, f (0) < 0,f (1) < 0, Wave fronts: u = U(z), z = x ct solves 1 0 f(u)du > 0 cu (z) = U (z), U( ) = 0, U( ) = 1 Fife and McLeod prove that that a wide range of initial conditions evolve into a wave front as t. (1) P. Fife and J. B. McLeod "The approach of solutions of nonlinear diffusion equations to travelling front solutions," Arch. Rat. Mech. and Anal. 65 (1977), Integral Equation and PDE Neuronal Models: p.11/51

12 Linearized Stability of Full Wave Let (U(z),V (z)) denote a traveling wave solution of the FHN Eqs. Linearize around (U(z),V (z)) : c dp dz dq dz = d2 p dz 2 + f (U) + q, f(u) = u(1 u)(u a) = b(p γq), 0 < b << 1 (1) C. Jones, "Stability of the traveling wave solution of the Fitzhugh-Nagumo system," Trans of AMS.286 (1984), Integral Equation and PDE Neuronal Models: p.12/51

13 Current Clamp HH Eqs Apply current I 0 to the voltage clamped HH system: C m V (t) = g k n 4 (V V k ) + G Na m 3 h(v V m ) n t m t h t + g l (V V l ) + I 0 = α n (V )(1 n) β n (V ) = α m (V )(1 n) β m (V ) = α h (V )(1 n) β h (V ) Rest state: (V,m,n,h) (V I0,m I0,n I0,h I0 ) for each I 0. Okan Gurel (1973) predicted that a Hopf bifurcation of periodic solutions occurs at a critial value I crit Integral Equation and PDE Neuronal Models: p.13/51

14 Current Clamp FHN Model Apply current I 0 to the voltage clamped FHN system: du dt w t = u(u a)(1 u) + w + I 0 = b(u γw) Rest state: (u,v) (u I0,v I0 ) for each I 0. Goal: prove that periodic solutions in an interval of I 0 values. Integral Equation and PDE Neuronal Models: p.14/51

15 Theory Theorem (WCT 1974) For the HH Eqs., and also for the FHN system, there is a critical value I crit such that a family of periodic solutions bifurcates from the rest state as I 0 passes through I crit. Proof for FHN: Apply the Hopf Bifurcation Theorem. (I) Linearize the system around the rest state (u I0,v I0 ) and let λ = α ± iβ denote the associated eigenvalues. (II) Show that α = 0 and β 0 at a critical value I 0 > 0. Integral Equation and PDE Neuronal Models: p.15/51

16 Experimental Verification The prediction of Okan Gurel was verified in Guttman et al, "Control of repetitive firing in squid axon membrane as a model for a neuron oscillator.: J Physiol (1980) 305: Integral Equation and PDE Neuronal Models: p.16/51

17 Part 2. Large Scale Models Integral equation systems were derived to model the behavior of populations of connected excitatory and inhibitory neurons. (A) Wilson-Cowan (1973) (B) Amari (1977) (C) Pinto-Ermentrout (2001) Integral Equation and PDE Neuronal Models: p.17/51

18 Wilson-Cowan Model 1973 E t I t = E + ω EE (x x,y y )f(e θ 1 )dx dy R 2 α ω IE (x x,y y )f(i θ 2 )dx y + Ψ 1 (x,y,t) R = I + ω EI (x x,y y )f(e θ 1 )dx R γ ω II (x x,y y )f(i θ 2 )dx + Ψ 2 (x,y,t) R E and I denote average activity of excitatory and inhibitory neuronal populations, ω ij = connection functions, f = firing rate, θ i = threshold, ψ i (x,y,t) = external input. H. R. Wilson and J. D. Cowan, Kybernetik 13 (1973), Integral Equation and PDE Neuronal Models: p.18/51

19 Amari Model 1977 τ u t = u + R ω(x x )f(u(x ) θ)dx + s(x,t) u = average activity of an excitatory neuronal population ω = the connection function, s(x,t) = external input { 0 if u theta, f(u) = 1 if u > θ Solutions: stationary bumps - regions of excitation, waves S. Amari, Biological Cybernetics 27 (1977), Integral Equation and PDE Neuronal Models: p.19/51

20 McLeod-Ermentrout 1993 Single population of excitable neurons: u t = u + k(x x )S ( u(x,t) ) dx k L 1 (, ),k 0 is even, k(η)dη = 1 S C 1 [0, 1],S 0,S(0) = 0,S(1) = 1,S (0) < 1,S (1) < 1 Theorem There is a unique monotonic traveling wave solution u(z),z = x ct such that u( ) = 0 and u( ) = 1 Integral Equation and PDE Neuronal Models: p.20/51

21 PDE (Laing and Troy 2003) u t + u = R 2 w ( (x s) 2 + (y q) 2 ) f(u(s,q,t) θ)dsdq Apply the Fourier transform F(g) (2π) 1 R2 exp( i(αx + βy))g(x,y)dxdy F(u + u t ) = F(w) F (f(u θ)) If w = w(r) then F(w) = F ( α 2 + β 2 ). To obtain the PDE approximate F(w) by a rational function of α 2 + β 2. Integral Equation and PDE Neuronal Models: p.21/51

22 F(u + u t ) = F(w) F(f(u θ)) F(w) = A B + (α 2 + β 2 M) 2 ( (α 2 + β 2 ) 2 2M(α 2 + β 2 ) + B + M 2) F(u+ut ) = A F(f(u θ)) Identities: (α 2 + β 2 ) 2 F(g) = F( 4 g) and (α 2 + β 2 ) F(g) = F( 2 g) Resulting PDE: ( 4 + 2M 2 + B + M 2) (u t + u) = Af(u θ) Integral Equation and PDE Neuronal Models: p.22/51

23 Example Let w = 2.1e r. Find M,A,B that minimize F(w) A B + (α 2 + β 2 M) 2 M = 2.5, A = 7, B =.52 w Circles: w = 2.1e r Solid curve: approximation r Integral Equation and PDE Neuronal Models: p.23/51

24 The Firing Rate f(u θ) = 2exp ( ) ρ (u θ) 2 H(u θ) H is the Heaviside function, ρ =.1, θ = 1.5 f(u) u Integral Equation and PDE Neuronal Models: p.24/51

25 Pinto-Ermentrout System u t v t = u + = ǫ(βu v) w(x,y,q,s)f(u θ)dq ds v + I u(x,y, 0) = f(x,y, 0), v(x,y, 0) = 0 v is a recovery variable, I is external input Pinto and Ermentrout: I and II (2001); 1D waves, I 0. Folias and Bressloff (2004); 2D breathers, I = I(x,y) 0. Y. Guo and C.C. Chow, (2005); 1D standing pulses Integral Equation and PDE Neuronal Models: p.25/51

26 Complex Eigenvalues The linearization of u t v t = u + = ǫ(βu v). around the steady state (u,v) = (0, 0) is w(x,y,q,s)f(u θ)dq ds v du dt dv dt = u v = ǫ(βu v). Integral Equation and PDE Neuronal Models: p.26/51

27 The linearized system du dt dv dt has complex eigenvalues = u v = ǫ(βu v) µ ± = (ǫ + 1) ± i 4βǫ (ǫ 1) 2 2 if and only if β > β = (ǫ 1)2 4ǫ. Integral Equation and PDE Neuronal Models: p.27/51

28 ǫ = θ =.1, β = II. Waves: β = < β < β 8.5 No Bulk oscillations. Multi ring waves. Periodic waves. Rotating waves. Integral Equation and PDE Neuronal Models: p.28/51

29 Equivalent PDE s w(x,y,s,q) = w ( (x q) 2 + (y s) 2 ) g(q, s) The PDE method: transform into u t v t = u + = ǫ(βu v) w(x,y,q,s)f(u θ)dq ds v + I ( 4 + 2M 2 + B + M 2) (u + u t + v I) = Ag(x,y)f(u θ) v t = ǫ(βu v). Integral Equation and PDE Neuronal Models: p.29/51

30 Waves ǫ = θ =.1, β = 3 double ring periodic Integral Equation and PDE Neuronal Models: p.30/51

31 Rotating Waves Rabbit cortex: Petsche et al (1974) Chic retina: Gorelova & Bures (1983) Turtle: Prechtel et al (1997) Mouse Hippocampus: Harris-White et al (1998) EEG Patterns: jirsa/imaging.html Models RD Eqs., Targets and Spirals, Koppel & Howard (1973) BZ Model: Winfree (1974) Integrate and Fire Models: Chu, Milton & Cowan (1994) Theta Neuron Model: Osan & Ermentrout (2001) Integral Equation and PDE Neuronal Models: p.31/51

32 Rotating Wave 1 Time course of solution at (x,y)=( 3.8,1.8) u( 3.8,1.8,t) t β = 3 Spiral Drift Integral Equation and PDE Neuronal Models: p.32/51

33 Inhomogeneous Coupling ( 4 + 2M 2 + B + M 2) (u + u t + v) = Ag(r,θ)f(u θ) v t = ǫ(βu v). ǫ = θ =.1, β = 3, g =.5 (1 + exp(.02rsin(.5φ))) u(r, 0) = Kexp(.5r 2 ), v(r, 0) 0 Spiral Initiation: Method 2 Integral Equation and PDE Neuronal Models: p.33/51

34 Rotating Waves In Rat Brain Huang, Troy, Ma, Schiff, Yang, Laing, Wu (2004) Hunag, Xu, Takagaki, Gao, Wu (2010) Integral Equation and PDE Neuronal Models: p.34/51

35 In-Vivo Rotating Waves In Cat Brain Viventi et al (2011) - rotating waves were initiated when picrotoxin was applied next to 15mm by 15mm sensors. Integral Equation and PDE Neuronal Models: p.35/51

36 Part III. Synchrony: β β Coexistence of (i) bulk synchronous oscillations, (ii) stable one bump waves, (iii) stable rest state. Synchrony in one dimension. Synchrony in two dimensions. Integral Equation and PDE Neuronal Models: p.36/51

37 Bulk oscillations Time dependent solutions (u(t), v(t)) of u t = u +.5 v t = ǫ(βu v). exp( x x )H(u(x,t) θ)dx v, satisfy du dt dv dt = u + H(u θ) v = ǫ(βu v) Integral Equation and PDE Neuronal Models: p.37/51

38 Theorem 0.1 Let 0 < ǫ < 1. If θ > 0 is small there is a β > β such that if β β then du dt dv dt = u + H(u θ) v = ǫ(βu v) has a periodic solution which coexists with the stable rest state (u,v) = (0, 0). If ǫ = θ =.1 then β = Integral Equation and PDE Neuronal Models: p.38/51

39 ǫ = θ =.1 v v =0.6 u =0 θ u =0.3 β=12.6 u.4 θ 0 u v 15 t u =0 v.9 v =0 u =0 θ.5 β=β =12.61 u.4 θ 0 u v 9 t v v =0.6 u =0 θ u =0.3 β=15 u.4 θ 0 u v 9 t Integral Equation and PDE Neuronal Models: p.39/51

40 Synchrony in one dimension 1 u u(x,0)=.15e x2 1 u u(x,0)=.6e x 2 θ 0 θ 0 β=12.61 β= x 1 x Integral Equation and PDE Neuronal Models: p.40/51

41 1 u u(x,0)=.6e x2 t=0 1 u t=2.3 θ 0 θ 0 β= x x 1 u t=t 1 =6.4 1 u t=t 7 =49.3 θ θ x 1 50 L 0 L 50 x 1 u t=t 19 =135 1 u t= θ θ 1 L L x 1 L x L Integral Equation and PDE Neuronal Models: p.41/51

42 Spread of synchrony How fast does the region of synchrony [ L,L] expand outwards from the point of stimulus? 1 u t=t 7 =49.3 u Inset t=49.3 θ θ 0 0 x 1 50 L 0 L 50 x.1 L 2L= L=22.9 Integral Equation and PDE Neuronal Models: p.42/51

43 Behavior at the center u(0,t) x=0.4 θ t u(0,t).4 t 1 =6.4 u(0,t) θ Inset θ t t= t.4.1 Integral Equation and PDE Neuronal Models: p.43/51

44 Rate of expansion 0.5 u 0 t θ 0.5 T 0 3 t 6 ( ) t Rate of expansion = c T where c is traveling wave speed. c = 22.4 mm/s Wilson et al, Nature (2001) Integral Equation and PDE Neuronal Models: p.44/51

45 Two Dimensions u t = u v + R 2 2.1e (x x ) 2 +(y y ) 2 H(u(x,y,t) θ)dx dy, v t = ǫ(βu v), u(x,y, 0) = u 0 (x,y), v(x, 0) = 0 (x,y) R 2, For this coupling β = 8.5 Integral Equation and PDE Neuronal Models: p.45/51

46 β(x,y) = { 8.5 if (x,y) Ω1 = {(x,y) (x + 20) 2 + y 2 < 25 2 }, 7.0 otherwise. u(x,y, 0) = e (x+20) 2 +y 2 and v(x,y, 0) = 0, 0 x 2 +y Integral Equation and PDE Neuronal Models: p.46/51

47 Seizure Recordings Leo Towle, Jean-Paul Spire, John Milton: Electrocortigraphic readings of seizures from a grid of electrodes implanted on the cortical surface Integral Equation and PDE Neuronal Models: p.47/51

48 Seizure Propagation mm s Predicted Migration Rate = ( ) t T c 5.33 mm s Experimental Migration Rate 4 mm s Integral Equation and PDE Neuronal Models: p.48/51

49 Synchronization in one region can trigger synchronization in another. β(x,y) = 8.5 if (x,y) Ω 1 = {(x,y) (x + 20) 2 + y 2 < 12 2 }, 9.5 if (x,y) Ω 2 = {(x,y) (x 20) 2 + y 2 < 12 2 }, 7.0 otherwise. u(x,y, 0) = e (x+20) 2 +y 2 and v(x,y, 0) = 0, 0 x 2 +y Integral Equation and PDE Neuronal Models: p.49/51

50 Synchronization in one region inhibits synchronization in another if they are too close. β(x,y) = 8.5 if (x,y) Ω 1 = {(x,y) (x + 18) 2 + y 2 < 18 2 }, 9.5 if (x,y) Ω 2 = {(x,y) (x 18) 2 + y 2 < 18 2 }, 7.0 otherwise. u(x,y, 0) = e (x+18) 2 +y 2 and v(x,y, 0) = 0, 0 x 2 +y Integral Equation and PDE Neuronal Models: p.50/51

51 Conclusions The mean field modeling approach gives mathematical predictions which are (I) qualitatively meaningful, and (II) might be practically useful. Integral Equation and PDE Neuronal Models: p.51/51

ANALYTICAL DETERMINATION OF INITIAL CONDITIONS LEADING TO FIRING IN NERVE FIBERS

ANALYTICAL DETERMINATION OF INITIAL CONDITIONS LEADING TO FIRING IN NERVE FIBERS ANALYTICAL DETERMINATION OF INITIAL CONDITIONS LEADING TO FIRING IN NERVE FIBERS Sabir Jacquir, Stéphane Binczak, Jean-Marie Bilbault To cite this version: Sabir Jacquir, Stéphane Binczak, Jean-Marie Bilbault.

More information

From neuronal oscillations to complexity

From neuronal oscillations to complexity 1/39 The Fourth International Workshop on Advanced Computation for Engineering Applications (ACEA 2008) MACIS 2 Al-Balqa Applied University, Salt, Jordan Corson Nathalie, Aziz Alaoui M.A. University of

More information

Math 345 Intro to Math Biology Lecture 20: Mathematical model of Neuron conduction

Math 345 Intro to Math Biology Lecture 20: Mathematical model of Neuron conduction Math 345 Intro to Math Biology Lecture 20: Mathematical model of Neuron conduction Junping Shi College of William and Mary November 8, 2018 Neuron Neurons Neurons are cells in the brain and other subsystems

More information

Lokta-Volterra predator-prey equation dx = ax bxy dt dy = cx + dxy dt

Lokta-Volterra predator-prey equation dx = ax bxy dt dy = cx + dxy dt Periodic solutions A periodic solution is a solution (x(t), y(t)) of dx = f(x, y) dt dy = g(x, y) dt such that x(t + T ) = x(t) and y(t + T ) = y(t) for any t, where T is a fixed number which is a period

More information

Single-Compartment Neural Models

Single-Compartment Neural Models Single-Compartment Neural Models BENG/BGGN 260 Neurodynamics University of California, San Diego Week 2 BENG/BGGN 260 Neurodynamics (UCSD) Single-Compartment Neural Models Week 2 1 / 18 Reading Materials

More information

STIMULUS-INDUCED WAVES AND BREATHERS IN SYNAPTICALLY-COUPLED NEURAL NETWORKS. Stefanos Efthymios Folias

STIMULUS-INDUCED WAVES AND BREATHERS IN SYNAPTICALLY-COUPLED NEURAL NETWORKS. Stefanos Efthymios Folias STIMULUS-INDUCED WAVES AND BREATHERS IN SYNAPTICALLY-COUPLED NEURAL NETWORKS Stefanos Efthymios Folias A dissertation submitted to the faculty of The University of Utah in partial fulfillment of the requirements

More information

1 Hodgkin-Huxley Theory of Nerve Membranes: The FitzHugh-Nagumo model

1 Hodgkin-Huxley Theory of Nerve Membranes: The FitzHugh-Nagumo model 1 Hodgkin-Huxley Theory of Nerve Membranes: The FitzHugh-Nagumo model Alan Hodgkin and Andrew Huxley developed the first quantitative model of the propagation of an electrical signal (the action potential)

More information

Dynamical systems in neuroscience. Pacific Northwest Computational Neuroscience Connection October 1-2, 2010

Dynamical systems in neuroscience. Pacific Northwest Computational Neuroscience Connection October 1-2, 2010 Dynamical systems in neuroscience Pacific Northwest Computational Neuroscience Connection October 1-2, 2010 What do I mean by a dynamical system? Set of state variables Law that governs evolution of state

More information

Single neuron models. L. Pezard Aix-Marseille University

Single neuron models. L. Pezard Aix-Marseille University Single neuron models L. Pezard Aix-Marseille University Biophysics Biological neuron Biophysics Ionic currents Passive properties Active properties Typology of models Compartmental models Differential

More information

Lecture 11 : Simple Neuron Models. Dr Eileen Nugent

Lecture 11 : Simple Neuron Models. Dr Eileen Nugent Lecture 11 : Simple Neuron Models Dr Eileen Nugent Reading List Nelson, Biological Physics, Chapter 12 Phillips, PBoC, Chapter 17 Gerstner, Neuronal Dynamics: from single neurons to networks and models

More information

Voltage-clamp and Hodgkin-Huxley models

Voltage-clamp and Hodgkin-Huxley models Voltage-clamp and Hodgkin-Huxley models Read: Hille, Chapters 2-5 (best Koch, Chapters 6, 8, 9 See also Hodgkin and Huxley, J. Physiol. 117:500-544 (1952. (the source Clay, J. Neurophysiol. 80:903-913

More information

MATH 3104: THE HODGKIN-HUXLEY EQUATIONS

MATH 3104: THE HODGKIN-HUXLEY EQUATIONS MATH 3104: THE HODGKIN-HUXLEY EQUATIONS Parallel conductance model A/Prof Geoffrey Goodhill, Semester 1, 2009 So far we have modelled neuronal membranes by just one resistance (conductance) variable. We

More information

Electrophysiology of the neuron

Electrophysiology of the neuron School of Mathematical Sciences G4TNS Theoretical Neuroscience Electrophysiology of the neuron Electrophysiology is the study of ionic currents and electrical activity in cells and tissues. The work of

More information

Persistent fluctuations of activity in undriven continuum neural field models with power-law connections

Persistent fluctuations of activity in undriven continuum neural field models with power-law connections PHYSICAL REVIEW E 79, 11918 29 Persistent fluctuations of activity in undriven continuum neural field models with power-law connections C. A. Brackley and M. S. Turner Department of Physics, University

More information

A Quantitative Approximation Scheme for the Traveling Wave Solutions in the Hodgkin Huxley Model

A Quantitative Approximation Scheme for the Traveling Wave Solutions in the Hodgkin Huxley Model Biophysical Journal Volume 79 December 2000 2893 2901 2893 A Quantitative Approximation Scheme for the Traveling Wave Solutions in the Hodgkin Huxley Model C. B. Muratov Department of Mathematical Sciences,

More information

Bursting and Chaotic Activities in the Nonlinear Dynamics of FitzHugh-Rinzel Neuron Model

Bursting and Chaotic Activities in the Nonlinear Dynamics of FitzHugh-Rinzel Neuron Model Bursting and Chaotic Activities in the Nonlinear Dynamics of FitzHugh-Rinzel Neuron Model Abhishek Yadav *#, Anurag Kumar Swami *, Ajay Srivastava * * Department of Electrical Engineering, College of Technology,

More information

Reduction of Conductance Based Models with Slow Synapses to Neural Nets

Reduction of Conductance Based Models with Slow Synapses to Neural Nets Reduction of Conductance Based Models with Slow Synapses to Neural Nets Bard Ermentrout October 1, 28 Abstract The method of averaging and a detailed bifurcation calculation are used to reduce a system

More information

Bursting Oscillations of Neurons and Synchronization

Bursting Oscillations of Neurons and Synchronization Bursting Oscillations of Neurons and Synchronization Milan Stork Applied Electronics and Telecommunications, Faculty of Electrical Engineering/RICE University of West Bohemia, CZ Univerzitni 8, 3064 Plzen

More information

From Baseline to Epileptiform Activity: A Path to Synchronized Rhythmicity in Large-Scale Neural Networks

From Baseline to Epileptiform Activity: A Path to Synchronized Rhythmicity in Large-Scale Neural Networks From Baseline to Epileptiform Activity: A Path to Synchronized Rhythmicity in Large-Scale Neural Networks Vladimir Shusterman and William C. Troy Cardiovascular Institute and Department of Mathematics

More information

Biological Modeling of Neural Networks

Biological Modeling of Neural Networks Week 3 part 1 : Rection of the Hodgkin-Huxley Model 3.1 From Hodgkin-Huxley to 2D Biological Modeling of Neural Netorks - Overvie: From 4 to 2 dimensions - MathDetour 1: Exploiting similarities - MathDetour

More information

From Baseline to Epileptiform Activity: A Path to Synchronized Rhythmicity in Large-Scale Neural Networks

From Baseline to Epileptiform Activity: A Path to Synchronized Rhythmicity in Large-Scale Neural Networks From Baseline to Epileptiform Activity: A Path to Synchronized Rhythmicity in Large-Scale Neural Networks Vladimir Shusterman and William C. Troy Cardiovascular Institute and Department of Mathematics

More information

Entrainment and Chaos in the Hodgkin-Huxley Oscillator

Entrainment and Chaos in the Hodgkin-Huxley Oscillator Entrainment and Chaos in the Hodgkin-Huxley Oscillator Kevin K. Lin http://www.cims.nyu.edu/ klin Courant Institute, New York University Mostly Biomath - 2005.4.5 p.1/42 Overview (1) Goal: Show that the

More information

Topics in Neurophysics

Topics in Neurophysics Topics in Neurophysics Alex Loebel, Martin Stemmler and Anderas Herz Exercise 2 Solution (1) The Hodgkin Huxley Model The goal of this exercise is to simulate the action potential according to the model

More information

Voltage-clamp and Hodgkin-Huxley models

Voltage-clamp and Hodgkin-Huxley models Voltage-clamp and Hodgkin-Huxley models Read: Hille, Chapters 2-5 (best) Koch, Chapters 6, 8, 9 See also Clay, J. Neurophysiol. 80:903-913 (1998) (for a recent version of the HH squid axon model) Rothman

More information

Slow Manifold of a Neuronal Bursting Model

Slow Manifold of a Neuronal Bursting Model Slow Manifold of a Neuronal Bursting Model Jean-Marc Ginoux 1 and Bruno Rossetto 2 1 PROTEE Laboratory, Université du Sud, B.P. 2132, 83957, La Garde Cedex, France, ginoux@univ-tln.fr 2 PROTEE Laboratory,

More information

Dynamical Systems in Neuroscience: Elementary Bifurcations

Dynamical Systems in Neuroscience: Elementary Bifurcations Dynamical Systems in Neuroscience: Elementary Bifurcations Foris Kuang May 2017 1 Contents 1 Introduction 3 2 Definitions 3 3 Hodgkin-Huxley Model 3 4 Morris-Lecar Model 4 5 Stability 5 5.1 Linear ODE..............................................

More information

Mathematical analysis of a 3D model of cellular electrophysiology

Mathematical analysis of a 3D model of cellular electrophysiology Mathematical analysis of a 3D model of cellular electrophysiology Hiroshi Matano (Univ. of Tokyo) joint work with Yoichiro Mori (Univ. of Minnesota) Seoul-Tokyo Conference on Elliptic and Parabolic PDEs

More information

Modeling Action Potentials in Cell Processes

Modeling Action Potentials in Cell Processes Modeling Action Potentials in Cell Processes Chelsi Pinkett, Jackie Chism, Kenneth Anderson, Paul Klockenkemper, Christopher Smith, Quarail Hale Tennessee State University Action Potential Models Chelsi

More information

Lecture 15: Biological Waves

Lecture 15: Biological Waves Lecture 15: Biological Waves Jonathan A. Sherratt Contents 1 Wave Fronts I: Modelling Epidermal Wound Healing 2 1.1 Epidermal Wound Healing....................... 2 1.2 A Mathematical Model.........................

More information

Consider the following spike trains from two different neurons N1 and N2:

Consider the following spike trains from two different neurons N1 and N2: About synchrony and oscillations So far, our discussions have assumed that we are either observing a single neuron at a, or that neurons fire independent of each other. This assumption may be correct in

More information

Chapter 2 The Hodgkin Huxley Theory of Neuronal Excitation

Chapter 2 The Hodgkin Huxley Theory of Neuronal Excitation Chapter 2 The Hodgkin Huxley Theory of Neuronal Excitation Hodgkin and Huxley (1952) proposed the famous Hodgkin Huxley (hereinafter referred to as HH) equations which quantitatively describe the generation

More information

3 Action Potentials - Brutal Approximations

3 Action Potentials - Brutal Approximations Physics 172/278 - David Kleinfeld - Fall 2004; Revised Winter 2015 3 Action Potentials - Brutal Approximations The Hodgkin-Huxley equations for the behavior of the action potential in squid, and similar

More information

arxiv: v1 [physics.bio-ph] 2 Jul 2008

arxiv: v1 [physics.bio-ph] 2 Jul 2008 Modeling Excitable Systems Jarrett L. Lancaster and Edward H. Hellen University of North Carolina Greensboro, Department of Physics and Astronomy, Greensboro, NC 27402 arxiv:0807.0451v1 [physics.bio-ph]

More information

Oscillatory pulses in FitzHugh Nagumo type systems with cross-diffusion

Oscillatory pulses in FitzHugh Nagumo type systems with cross-diffusion Mathematical Medicine and Biology (2011) 28, 217 226 doi:10.1093/imammb/dqq012 Advance Access publication on August 4, 2010 Oscillatory pulses in FitzHugh Nagumo type systems with cross-diffusion E. P.

More information

Single-Cell and Mean Field Neural Models

Single-Cell and Mean Field Neural Models 1 Single-Cell and Mean Field Neural Models Richard Bertram Department of Mathematics and Programs in Neuroscience and Molecular Biophysics Florida State University Tallahassee, Florida 32306 The neuron

More information

Lecture 18: Bistable Fronts PHYS 221A, Spring 2017

Lecture 18: Bistable Fronts PHYS 221A, Spring 2017 Lecture 18: Bistable Fronts PHYS 221A, Spring 2017 Lectures: P. H. Diamond Notes: Xiang Fan June 15, 2017 1 Introduction In the previous lectures, we learned about Turing Patterns. Turing Instability is

More information

Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators

Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators Ranjeetha Bharath and Jean-Jacques Slotine Massachusetts Institute of Technology ABSTRACT This work explores

More information

On Parameter Estimation for Neuron Models

On Parameter Estimation for Neuron Models On Parameter Estimation for Neuron Models Abhijit Biswas Department of Mathematics Temple University November 30th, 2017 Abhijit Biswas (Temple University) On Parameter Estimation for Neuron Models November

More information

A review of stability and dynamical behaviors of differential equations:

A review of stability and dynamical behaviors of differential equations: A review of stability and dynamical behaviors of differential equations: scalar ODE: u t = f(u), system of ODEs: u t = f(u, v), v t = g(u, v), reaction-diffusion equation: u t = D u + f(u), x Ω, with boundary

More information

CHEM 515: Chemical Kinetics and Dynamics

CHEM 515: Chemical Kinetics and Dynamics Alejandro J. Garza S01163018 Department of Chemistry, Rice University, Houston, TX email: ajg7@rice.edu, ext. 2657 Submitted December 12, 2011 Abstract Spontaneous antispiral wave formation was observed

More information

Turning points and traveling waves in FitzHugh-Nagumo type equations

Turning points and traveling waves in FitzHugh-Nagumo type equations Turning points and traveling waves in FitzHugh-Nagumo type equations Weishi Liu and Erik Van Vleck Department of Mathematics University of Kansas, Lawrence, KS 66045 E-mail: wliu@math.ku.edu, evanvleck@math.ku.edu

More information

Neural Modeling and Computational Neuroscience. Claudio Gallicchio

Neural Modeling and Computational Neuroscience. Claudio Gallicchio Neural Modeling and Computational Neuroscience Claudio Gallicchio 1 Neuroscience modeling 2 Introduction to basic aspects of brain computation Introduction to neurophysiology Neural modeling: Elements

More information

Introduction and the Hodgkin-Huxley Model

Introduction and the Hodgkin-Huxley Model 1 Introduction and the Hodgkin-Huxley Model Richard Bertram Department of Mathematics and Programs in Neuroscience and Molecular Biophysics Florida State University Tallahassee, Florida 32306 Reference:

More information

Mathematical Foundations of Neuroscience - Lecture 3. Electrophysiology of neurons - continued

Mathematical Foundations of Neuroscience - Lecture 3. Electrophysiology of neurons - continued Mathematical Foundations of Neuroscience - Lecture 3. Electrophysiology of neurons - continued Filip Piękniewski Faculty of Mathematics and Computer Science, Nicolaus Copernicus University, Toruń, Poland

More information

Introduction to Physiology V - Coupling and Propagation

Introduction to Physiology V - Coupling and Propagation Introduction to Physiology V - Coupling and Propagation J. P. Keener Mathematics Department Coupling and Propagation p./33 Spatially Extended Excitable Media Neurons and axons Coupling and Propagation

More information

Chimera states in networks of biological neurons and coupled damped pendulums

Chimera states in networks of biological neurons and coupled damped pendulums in neural models in networks of pendulum-like elements in networks of biological neurons and coupled damped pendulums J. Hizanidis 1, V. Kanas 2, A. Bezerianos 3, and T. Bountis 4 1 National Center for

More information

Lecture 5: Travelling Waves

Lecture 5: Travelling Waves Computational Biology Group (CoBI), D-BSSE, ETHZ Lecture 5: Travelling Waves Prof Dagmar Iber, PhD DPhil MSc Computational Biology 2015 26. Oktober 2016 2 / 68 Contents 1 Introduction to Travelling Waves

More information

1 Introduction and neurophysiology

1 Introduction and neurophysiology Dynamics of Continuous, Discrete and Impulsive Systems Series B: Algorithms and Applications 16 (2009) 535-549 Copyright c 2009 Watam Press http://www.watam.org ASYMPTOTIC DYNAMICS OF THE SLOW-FAST HINDMARSH-ROSE

More information

Title. Author(s)Fujii, Hiroshi; Tsuda, Ichiro. CitationNeurocomputing, 58-60: Issue Date Doc URL. Type.

Title. Author(s)Fujii, Hiroshi; Tsuda, Ichiro. CitationNeurocomputing, 58-60: Issue Date Doc URL. Type. Title Neocortical gap junction-coupled interneuron systems exhibiting transient synchrony Author(s)Fujii, Hiroshi; Tsuda, Ichiro CitationNeurocomputing, 58-60: 151-157 Issue Date 2004-06 Doc URL http://hdl.handle.net/2115/8488

More information

Hopf bifurcations, and Some variations of diffusive logistic equation JUNPING SHIddd

Hopf bifurcations, and Some variations of diffusive logistic equation JUNPING SHIddd Hopf bifurcations, and Some variations of diffusive logistic equation JUNPING SHIddd College of William and Mary Williamsburg, Virginia 23187 Mathematical Applications in Ecology and Evolution Workshop

More information

6.3.4 Action potential

6.3.4 Action potential I ion C m C m dφ dt Figure 6.8: Electrical circuit model of the cell membrane. Normally, cells are net negative inside the cell which results in a non-zero resting membrane potential. The membrane potential

More information

PDE Methods for Nonlocal Models

PDE Methods for Nonlocal Models SIAM J. APPLIED DYNAMICAL SYSTEMS Vol. 2, No. 3, pp. 487 516 c 23 Society for Industrial and Applied Mathematics PDE Methods for Nonlocal Models Carlo R. Laing and William C. Troy Abstract. We develop

More information

Delay-induced destabilization of entrainment of nerve impulses on ephaptically coupled nerve fibers

Delay-induced destabilization of entrainment of nerve impulses on ephaptically coupled nerve fibers APS/123-QED Delay-induced destabilization of entrainment of nerve impulses on ephaptically coupled nerve fibers Mohit H. Adhikari and John K. McIver Department of Physics and Astronomy University of New

More information

Bo Deng University of Nebraska-Lincoln UNL Math Biology Seminar

Bo Deng University of Nebraska-Lincoln UNL Math Biology Seminar Mathematical Model of Neuron Bo Deng University of Nebraska-Lincoln UNL Math Biology Seminar 09-10-2015 Review -- One Basic Circuit By Kirchhoff's Current Law 0 = I C + I R + I L I ext By Kirchhoff s Voltage

More information

Stabilization of pulse waves through inhibition in a feedforward neural network

Stabilization of pulse waves through inhibition in a feedforward neural network Physica D 210 (2005) 118 137 Stabilization of pulse waves through inhibition in a feedforward neural network A Tonnelier Cortex Project, INRIA Lorraine, Campus Scientifique, 54 602 Villers-lès-Nancy, France

More information

BIOELECTRIC PHENOMENA

BIOELECTRIC PHENOMENA Chapter 11 BIOELECTRIC PHENOMENA 11.3 NEURONS 11.3.1 Membrane Potentials Resting Potential by separation of charge due to the selective permeability of the membrane to ions From C v= Q, where v=60mv and

More information

Spatially Localized Synchronous Oscillations in Synaptically Coupled Neuronal Networks: Conductance-based Models and Discrete Maps

Spatially Localized Synchronous Oscillations in Synaptically Coupled Neuronal Networks: Conductance-based Models and Discrete Maps SIAM J. APPLIED DYNAMICAL SYSTEMS Vol. 9, No. 3, pp. 1019 1060 c 2010 Society for Industrial and Applied Mathematics Spatially Localized Synchronous Oscillations in Synaptically Coupled Neuronal Networks:

More information

Lecture Notes 8C120 Inleiding Meten en Modelleren. Cellular electrophysiology: modeling and simulation. Nico Kuijpers

Lecture Notes 8C120 Inleiding Meten en Modelleren. Cellular electrophysiology: modeling and simulation. Nico Kuijpers Lecture Notes 8C2 Inleiding Meten en Modelleren Cellular electrophysiology: modeling and simulation Nico Kuijpers nico.kuijpers@bf.unimaas.nl February 9, 2 2 8C2 Inleiding Meten en Modelleren Extracellular

More information

Stability Analysis of Stationary Solutions for the Cahn Hilliard Equation

Stability Analysis of Stationary Solutions for the Cahn Hilliard Equation Stability Analysis of Stationary Solutions for the Cahn Hilliard Equation Peter Howard, Texas A&M University University of Louisville, Oct. 19, 2007 References d = 1: Commun. Math. Phys. 269 (2007) 765

More information

Effects of Betaxolol on Hodgkin-Huxley Model of Tiger Salamander Retinal Ganglion Cell

Effects of Betaxolol on Hodgkin-Huxley Model of Tiger Salamander Retinal Ganglion Cell Effects of Betaxolol on Hodgkin-Huxley Model of Tiger Salamander Retinal Ganglion Cell 1. Abstract Matthew Dunlevie Clement Lee Indrani Mikkilineni mdunlevi@ucsd.edu cll008@ucsd.edu imikkili@ucsd.edu Isolated

More information

Modelling biological oscillations

Modelling biological oscillations Modelling biological oscillations Shan He School for Computational Science University of Birmingham Module 06-23836: Computational Modelling with MATLAB Outline Outline of Topics Van der Pol equation Van

More information

Basic elements of neuroelectronics -- membranes -- ion channels -- wiring

Basic elements of neuroelectronics -- membranes -- ion channels -- wiring Computing in carbon Basic elements of neuroelectronics -- membranes -- ion channels -- wiring Elementary neuron models -- conductance based -- modelers alternatives Wires -- signal propagation -- processing

More information

Neuronal Dynamics: Computational Neuroscience of Single Neurons

Neuronal Dynamics: Computational Neuroscience of Single Neurons Week 4 part 5: Nonlinear Integrate-and-Fire Model 4.1 From Hodgkin-Huxley to 2D Neuronal Dynamics: Computational Neuroscience of Single Neurons Week 4 Recing detail: Two-dimensional neuron models Wulfram

More information

Final Project Descriptions Introduction to Mathematical Biology Professor: Paul J. Atzberger. Project I: Predator-Prey Equations

Final Project Descriptions Introduction to Mathematical Biology Professor: Paul J. Atzberger. Project I: Predator-Prey Equations Final Project Descriptions Introduction to Mathematical Biology Professor: Paul J. Atzberger Project I: Predator-Prey Equations The Lotka-Volterra Predator-Prey Model is given by: du dv = αu βuv = ρβuv

More information

1 Assignment 1: Nonlinear dynamics (due September

1 Assignment 1: Nonlinear dynamics (due September Assignment : Nonlinear dynamics (due September 4, 28). Consider the ordinary differential equation du/dt = cos(u). Sketch the equilibria and indicate by arrows the increase or decrease of the solutions.

More information

Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting

Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting Eugene M. Izhikevich The MIT Press Cambridge, Massachusetts London, England Contents Preface xv 1 Introduction 1 1.1 Neurons

More information

Title. Author(s)Yanagita, T. CitationPhysical Review E, 76(5): Issue Date Doc URL. Rights. Type.

Title. Author(s)Yanagita, T. CitationPhysical Review E, 76(5): Issue Date Doc URL. Rights. Type. Title Input-output relation of FitzHugh-Nagumo elements ar Author(s)Yanagita, T. CitationPhysical Review E, 76(5): 5625--5625-3 Issue Date 27- Doc URL http://hdl.handle.net/25/32322 Rights Copyright 27

More information

Dynamical phase transitions in periodically driven model neurons

Dynamical phase transitions in periodically driven model neurons Dynamical phase transitions in periodically driven model neurons Jan R. Engelbrecht 1 and Renato Mirollo 2 1 Department of Physics, Boston College, Chestnut Hill, Massachusetts 02467, USA 2 Department

More information

1 Introduction We will consider traveling waves for reaction-diusion equations (R-D) u t = nx i;j=1 (a ij (x)u xi ) xj + f(u) uj t=0 = u 0 (x) (1.1) w

1 Introduction We will consider traveling waves for reaction-diusion equations (R-D) u t = nx i;j=1 (a ij (x)u xi ) xj + f(u) uj t=0 = u 0 (x) (1.1) w Reaction-Diusion Fronts in Periodically Layered Media George Papanicolaou and Xue Xin Courant Institute of Mathematical Sciences 251 Mercer Street, New York, N.Y. 10012 Abstract We compute the eective

More information

LIMIT CYCLE OSCILLATORS

LIMIT CYCLE OSCILLATORS MCB 137 EXCITABLE & OSCILLATORY SYSTEMS WINTER 2008 LIMIT CYCLE OSCILLATORS The Fitzhugh-Nagumo Equations The best example of an excitable phenomenon is the firing of a nerve: according to the Hodgkin

More information

Tracking the State of the Hindmarsh-Rose Neuron by Using the Coullet Chaotic System Based on a Single Input

Tracking the State of the Hindmarsh-Rose Neuron by Using the Coullet Chaotic System Based on a Single Input ISSN 1746-7659, England, UK Journal of Information and Computing Science Vol. 11, No., 016, pp.083-09 Tracking the State of the Hindmarsh-Rose Neuron by Using the Coullet Chaotic System Based on a Single

More information

Signal processing in nervous system - Hodgkin-Huxley model

Signal processing in nervous system - Hodgkin-Huxley model Signal processing in nervous system - Hodgkin-Huxley model Ulrike Haase 19.06.2007 Seminar "Gute Ideen in der theoretischen Biologie / Systembiologie" Signal processing in nervous system Nerve cell and

More information

Figure 1: Ca2+ wave in a Xenopus oocyte following fertilization. Time goes from top left to bottom right. From Fall et al., 2002.

Figure 1: Ca2+ wave in a Xenopus oocyte following fertilization. Time goes from top left to bottom right. From Fall et al., 2002. 1 Traveling Fronts Richard Bertram Department of Mathematics and Programs in Neuroscience and Molecular Biophysics Florida State University Tallahassee, Florida 32306 2 When mature Xenopus oocytes (frog

More information

Travelling waves. Chapter 8. 1 Introduction

Travelling waves. Chapter 8. 1 Introduction Chapter 8 Travelling waves 1 Introduction One of the cornerstones in the study of both linear and nonlinear PDEs is the wave propagation. A wave is a recognizable signal which is transferred from one part

More information

Standing Waves Of Spatially Discrete Fitzhughnagumo

Standing Waves Of Spatially Discrete Fitzhughnagumo University of Central Florida Electronic Theses and Dissertations Masters Thesis (Open Access) Standing Waves Of Spatially Discrete Fitzhughnagumo Equations 29 Joseph Segal University of Central Florida

More information

Identification of Unknown Functions in Dynamic Systems

Identification of Unknown Functions in Dynamic Systems Identification of Unknown Functions in Dynamic Systems Stéphane Binczak, Eric Busvelle, Jean-Paul Gauthier and Sabir Jacquir Abstract We consider the problem of representing a complex process by a simple

More information

Critical fronts in initiation of excitation waves

Critical fronts in initiation of excitation waves Critical fronts in initiation of excitation waves I. Idris and V. N. Biktashev Department of Mathematical Sciences, University of Liverpool, Liverpool L69 7ZL, UK (Dated: June 3, 7) We consider the problem

More information

Chaos in the Hodgkin Huxley Model

Chaos in the Hodgkin Huxley Model SIAM J. APPLIED DYNAMICAL SYSTEMS Vol. 1, No. 1, pp. 105 114 c 2002 Society for Industrial and Applied Mathematics Chaos in the Hodgkin Huxley Model John Guckenheimer and Ricardo A. Oliva Abstract. The

More information

Lecture 10 : Neuronal Dynamics. Eileen Nugent

Lecture 10 : Neuronal Dynamics. Eileen Nugent Lecture 10 : Neuronal Dynamics Eileen Nugent Origin of the Cells Resting Membrane Potential: Nernst Equation, Donnan Equilbrium Action Potentials in the Nervous System Equivalent Electrical Circuits and

More information

Dynamical Systems for Biology - Excitability

Dynamical Systems for Biology - Excitability Dynamical Systems for Biology - Excitability J. P. Keener Mathematics Department Dynamical Systems for Biology p.1/25 Examples of Excitable Media B-Z reagent CICR (Calcium Induced Calcium Release) Nerve

More information

The Physics of the Heart. Sima Setayeshgar

The Physics of the Heart. Sima Setayeshgar The Physics of the Heart Sima Setayeshgar Department of Physics Indiana University Indiana Unversity Physics REU Seminar, July 27 2005 1 Stripes, Spots and Scrolls Indiana Unversity Physics REU Seminar,

More information

FRTF01 L8 Electrophysiology

FRTF01 L8 Electrophysiology FRTF01 L8 Electrophysiology Lecture Electrophysiology in general Recap: Linear Time Invariant systems (LTI) Examples of 1 and 2-dimensional systems Stability analysis The need for non-linear descriptions

More information

Principles of DCM. Will Penny. 26th May Principles of DCM. Will Penny. Introduction. Differential Equations. Bayesian Estimation.

Principles of DCM. Will Penny. 26th May Principles of DCM. Will Penny. Introduction. Differential Equations. Bayesian Estimation. 26th May 2011 Dynamic Causal Modelling Dynamic Causal Modelling is a framework studying large scale brain connectivity by fitting differential equation models to brain imaging data. DCMs differ in their

More information

1 R.V k V k 1 / I.k/ here; we ll stimulate the action potential another way.) Note that this further simplifies to. m 3 k h k.

1 R.V k V k 1 / I.k/ here; we ll stimulate the action potential another way.) Note that this further simplifies to. m 3 k h k. 1. The goal of this problem is to simulate a propagating action potential for the Hodgkin-Huxley model and to determine the propagation speed. From the class notes, the discrete version (i.e., after breaking

More information

Fast neural network simulations with population density methods

Fast neural network simulations with population density methods Fast neural network simulations with population density methods Duane Q. Nykamp a,1 Daniel Tranchina b,a,c,2 a Courant Institute of Mathematical Science b Department of Biology c Center for Neural Science

More information

Supporting Online Material for

Supporting Online Material for www.sciencemag.org/cgi/content/full/319/5869/1543/dc1 Supporting Online Material for Synaptic Theory of Working Memory Gianluigi Mongillo, Omri Barak, Misha Tsodyks* *To whom correspondence should be addressed.

More information

Chapter 24 BIFURCATIONS

Chapter 24 BIFURCATIONS Chapter 24 BIFURCATIONS Abstract Keywords: Phase Portrait Fixed Point Saddle-Node Bifurcation Diagram Codimension-1 Hysteresis Hopf Bifurcation SNIC Page 1 24.1 Introduction In linear systems, responses

More information

Compactlike Kink Solutions in Reaction Diffusion Systems. Abstract

Compactlike Kink Solutions in Reaction Diffusion Systems. Abstract Compactlike Kink Solutions in Reaction Diffusion Systems J.C. Comte Physics Department, University of Crete and Foundation for Research and Technology-Hellas P. O. Box 2208, 71003 Heraklion, Crete, Greece

More information

Synchronization and Phase Oscillators

Synchronization and Phase Oscillators 1 Synchronization and Phase Oscillators Richard Bertram Department of Mathematics and Programs in Neuroscience and Molecular Biophysics Florida State University Tallahassee, Florida 32306 Synchronization

More information

Conductance-Based Integrate-and-Fire Models

Conductance-Based Integrate-and-Fire Models NOTE Communicated by Michael Hines Conductance-Based Integrate-and-Fire Models Alain Destexhe Department of Physiology, Laval University School of Medicine, Québec, G1K 7P4, Canada A conductance-based

More information

Computational Neuroscience. Session 4-2

Computational Neuroscience. Session 4-2 Computational Neuroscience. Session 4-2 Dr. Marco A Roque Sol 06/21/2018 Two-Dimensional Two-Dimensional System In this section we will introduce methods of phase plane analysis of two-dimensional systems.

More information

Neuroscience applications: isochrons and isostables. Alexandre Mauroy (joint work with I. Mezic)

Neuroscience applications: isochrons and isostables. Alexandre Mauroy (joint work with I. Mezic) Neuroscience applications: isochrons and isostables Alexandre Mauroy (joint work with I. Mezic) Outline Isochrons and phase reduction of neurons Koopman operator and isochrons Isostables of excitable systems

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION Supplementary Figure S1. Pulses >3mJ reduce membrane resistance in HEK cells. Reversal potentials in a representative cell for IR-induced currents with laser pulses of 0.74 to

More information

Membrane Potentials, Action Potentials, and Synaptic Transmission. Membrane Potential

Membrane Potentials, Action Potentials, and Synaptic Transmission. Membrane Potential Cl Cl - - + K + K+ K + K Cl - 2/2/15 Membrane Potentials, Action Potentials, and Synaptic Transmission Core Curriculum II Spring 2015 Membrane Potential Example 1: K +, Cl - equally permeant no charge

More information

Existence of Traveling Fronts and Pulses in Lateral Inhibition Neuronal Networks with Sigmoidal Firing Rate Functions

Existence of Traveling Fronts and Pulses in Lateral Inhibition Neuronal Networks with Sigmoidal Firing Rate Functions Existence of Traveling Fronts and Pulses in Lateral Inhibition Neuronal Networks with Sigmoidal Firing ate Functions Alan Dyson October 12, 218 arxiv:181.5142v1 [math.ds] 11 Oct 218 Abstract The purpose

More information

Dynamics and complexity of Hindmarsh-Rose neuronal systems

Dynamics and complexity of Hindmarsh-Rose neuronal systems Dynamics and complexity of Hindmarsh-Rose neuronal systems Nathalie Corson and M.A. Aziz-Alaoui Laboratoire de Mathématiques Appliquées du Havre, 5 rue Philippe Lebon, 766 Le Havre, FRANCE nathalie.corson@univ-lehavre.fr

More information

Front Propagation. Chapter Reaction-Diffusion Systems Single component systems

Front Propagation. Chapter Reaction-Diffusion Systems Single component systems Chapter 8 Front Propagation 8.1 Reaction-Diffusion Systems We ve studied simple N = 1 dynamical systems of the form du dt = R(u). (8.1) Recall that the dynamics evolves u(t) monotonically toward the first

More information

Stochastic differential equations in neuroscience

Stochastic differential equations in neuroscience Stochastic differential equations in neuroscience Nils Berglund MAPMO, Orléans (CNRS, UMR 6628) http://www.univ-orleans.fr/mapmo/membres/berglund/ Barbara Gentz, Universität Bielefeld Damien Landon, MAPMO-Orléans

More information

Emergence of resonances in neural systems: the interplay between adaptive threshold and short-term synaptic plasticity

Emergence of resonances in neural systems: the interplay between adaptive threshold and short-term synaptic plasticity Emergence of resonances in neural systems: the interplay between adaptive threshold and short-term synaptic plasticity Jorge F. Mejias 1,2 and Joaquín J. Torres 2 1 Department of Physics and Center for

More information

Electronics 101 Solving a differential equation Incorporating space. Numerical Methods. Accuracy, stability, speed. Robert A.

Electronics 101 Solving a differential equation Incorporating space. Numerical Methods. Accuracy, stability, speed. Robert A. Numerical Methods Accuracy, stability, speed Robert A. McDougal Yale School of Medicine 21 June 2016 Hodgkin and Huxley: squid giant axon experiments Top: Alan Lloyd Hodgkin; Bottom: Andrew Fielding Huxley.

More information