Monte Carlo Simulations in Statistical Physics

Size: px
Start display at page:

Download "Monte Carlo Simulations in Statistical Physics"

Transcription

1 Part II Monte Carlo Simulations in Statistical Physics By D.Stauffer

2 Introduction In Statistical Physics one mostly deals with thermal motion of a system of particles at nonzero temperatures. For example, in a classical ideal gas of point-like molecules each particle has an average kinetic energy equal to dkbt /2 in d dimensions. Here T is the absolute temperature and kb = 1.6 X Joule per Kelvin is Boltzmann's constant. Statistical Physics is used try to explain such laws and to predict the properties of materials consisting of many such particles; therefore, in this example the specific heat is 3N kb /2 in three dimensions if the gas consists of N particles. In most applications, the number N of particles is very large, and they influence each other by their intermolecular forces. For example, a glass of beer contains about 1025 water molecules, and if these molecules did not interact with each other, the beer would vanish by evaporation, not by drinking. These interactions are also unhealthy for theoretical physics since with interactions usually one cannot solve exactly the problem of how the molecules move and what their average energy is, because even on a computer it is not possible to store the positions and velocities of 1025 point-like molecules. (The Cray-2 supercomputer has only two Gigabytes of main memory.) Instead, one is forced to work with a much smaller number of molecules, below 106, and solve numerically the equations of motion arising from Newton's law: force equals mass times acceleration. This method is called molecular dynamics and has already been used in the first part of this book by Zabolitzky. We will not deal with this technique here; readers who want to know more are referred to the book of D.W.Heermann [1J. Instead Statistical Physics mostly uses a probabilistic (or stochastic) method: The system of interacting particles has a fluctuating energy E, because we assume that it is in contact with a heat bath. For example, some people like to study glasses of whisky cooled by ice cubes in contact with the liquid. Energy is transferred more or less randomly from the heat bath (the ice cubes) to the system of interest (the whisky), and back. Statistical Physics assumes, in agreement with more detailed theories and with experiment, that the observed equilibrium system reaches a given total energy E with a probability P(E) '" exp(-e/kbt), where exp( x) = ex is the exponential function. Thus we shuffle the particles around randomly according to this probability, not to Newton's law. For large enough systems, the results are usually the same. Experts call this second method an example of the canonical ensemble and the first method, simulated by molecular dynamics, an example of the microcanonical ensemble. They also like the word Hamiltonian instead of energy. (Most quantum effects are neglected in these lectures.)

3 70 II Monte Carlo Simulations in Statistical Physics '?S 32. "Monte Carlo Simulation" In this part I want to avoid such names and instead simulate this probabilistic method on the computer. We tell the computer to do a certain operation with probability p by calculating a random number z which lies somewhere between zero and unity. All real numbers in that interval have the same chance to agree with that random number z. Then the given operation is executed if and only if the random number z is smaller than the probability p. For example, if p = 0.1 and if we produce a million different random numbers z, then about 90 % of these random numbers will be between 0.1 and 1, and only 10 % will be between 0 and 0.1. Thus the condition z < p is fulfilled with probability p (the next chapter deals with the production of random numbers on a computer). If the reader has the time and the money and does not demand too much accuracy, he may also produce them on the roulette tables of the Mediterranean resort town of Monte Carlo. This more traditional method has given the probabilistic Monte Carlo simulation of exp(-e/kbt) its name.

4 Introduction 71 Still, if we had to store and to change three coordinates and three velocity components for each particle of a three-dimensional experiment, we would need a lot of computer time and memory just as for molecular dynamics methods. Simulations are much simpler if we assume that the particles can only sit on the sites of a big lattice; then each lattice site is in one of only two states: Occupied or empty. This simplification is ideal for computers; only one bit is needed for each site. Moreover, we usually assume that only nearest neighbors influence each other; thus on a simple cubic lattice each site feels the forces from only six neighboring sites. This model for fluids is called the lattice gas or (spin 1/2) Ising model. The above formula exp( - E / kbt) is only valid in thermal equilibrium, i.e. when the temperature of the sample is the same as that of the surrounding heat bath and when properties like the average energy no longer change with time. In recent years many growth processes and disordered systems have also been studied which are not in thermal equilibrium. The probability to occupy a site is then defined differently, and various different growth processes are possible. Related models are the so-called cellular automata. Of course, all these Monte Carlo methods for lattice models are much easier for the computer than the molecular dynamics for a fluid. Therefore the simulation of more than 1010 sites was achieved in 1986, with up to 4200 sites treated per microsecond. (The million sites barrier was broken in 1981.) But we will still have to wait before computers beat nature with its 1025 molecules in a glass of beer. Common to all these models on lattices is a simple computing trick to save computing time: Use arrays with one index, not with two or three in 2 and 3 dimensions. For example, if the variables IS store the occupation status of the sites (IS=O or = -1 for empty, IS=l for occupied) in a simple cubic lattice of L*L*L sites, then it is not practical to store the sites as IS(I,J,K) with indices from 1 to L. Instead I prefer to store them as a one-dimensional array IS(K) with K from 1 to L3. The left neighbor of site K has the index K-1, the right neighbor is K+1, the neighbor in front (in the back) is K-L (K+L), and the neighbors above and below have the index K-L*L and K+L*L. (To ensure that the sites in the top-most plane also have an upper neighbor, and the sites in the lowest plane have a lower neighbor, I often store the content ofthe lowest plane again in a buffer plane on top of the top-most physical plane. Similarly, the content of the highest physical plane is stored in an additional buffer plane below the lowest physical plane. Then the upper buffer has indices K from 1 to L2, the physical sites are numbered from L2+ 1 to L3+L2, and the lower buffer plane has sites from K=L3+L2+1 to K=L3+2L2 which agree with sites IS(L2+1) to IS(2L2).) For two dimensions, a small 3*3 lattice is then stored as with italic numbers for the buffer lines

5 72 II Monte Carlo Simulations in Statistical Physics This method automatically leads to the so-called periodic (more precisely: helical) boundary conditions where there are no surface sites and where thus a limited number of lattice sites in general simulates better the infinitely large material than a system with free surfaces. Computer time is saved because the computer no longer has to evaluate I+J*L+K*L 2 for memory element IS(I,J,K) and because one does not need six IF-statements for the boundary sites. Moreover, on vectorcomputers a loop over all IS(K) (without buffers) now has L3 elements whereas with IS(I,J,K) the loop over K has only L elements. Vector computers often do not work efficiently if the innermost loop has only a small number of elements, and L3 is larger and thus more efficient to deal with than L. This. part deals first with the lattice gas in thermal equilibrium, and then with other models like cellular automata and growth processes. We end with the Kauffman model for genetics, which was invented by a physician, not a physicist. Apart from the next chapter on random number generation it should not be necessary to read any of the previous chapters to understand the following ones. Thus the biologically inclined reader may concentrate on Eden and Kauffman models, the solid state physicist on the Ising model. For all models, however, our emphasis will be on fast Fortran simulation oflarge systems, not on elegant programming or beautiful graphics display. We let the computer work for us, and not oblige us to follow its special wishes.

Progress toward a Monte Carlo Simulation of the Ice VI-VII Phase Transition

Progress toward a Monte Carlo Simulation of the Ice VI-VII Phase Transition Progress toward a Monte Carlo Simulation of the Ice VI-VII Phase Transition Christina Gower 2010 NSF/REU PROJECT Physics Department University of Notre Dame Advisor: Dr. Kathie E. Newman August 6, 2010

More information

An Introduction to Computer Simulation Methods

An Introduction to Computer Simulation Methods An Introduction to Computer Simulation Methods Applications to Physical Systems Second Edition Harvey Gould Department of Physics Clark University Jan Tobochnik Department of Physics Kalamazoo College

More information

Monte Carlo Simulation of the Ising Model. Abstract

Monte Carlo Simulation of the Ising Model. Abstract Monte Carlo Simulation of the Ising Model Saryu Jindal 1 1 Department of Chemical Engineering and Material Sciences, University of California, Davis, CA 95616 (Dated: June 9, 2007) Abstract This paper

More information

Random Walks A&T and F&S 3.1.2

Random Walks A&T and F&S 3.1.2 Random Walks A&T 110-123 and F&S 3.1.2 As we explained last time, it is very difficult to sample directly a general probability distribution. - If we sample from another distribution, the overlap will

More information

Copyright 2001 University of Cambridge. Not to be quoted or copied without permission.

Copyright 2001 University of Cambridge. Not to be quoted or copied without permission. Course MP3 Lecture 4 13/11/2006 Monte Carlo method I An introduction to the use of the Monte Carlo method in materials modelling Dr James Elliott 4.1 Why Monte Carlo? The name derives from the association

More information

(# = %(& )(* +,(- Closed system, well-defined energy (or e.g. E± E/2): Microcanonical ensemble

(# = %(& )(* +,(- Closed system, well-defined energy (or e.g. E± E/2): Microcanonical ensemble Recall from before: Internal energy (or Entropy): &, *, - (# = %(& )(* +,(- Closed system, well-defined energy (or e.g. E± E/2): Microcanonical ensemble & = /01Ω maximized Ω: fundamental statistical quantity

More information

Lab 70 in TFFM08. Curie & Ising

Lab 70 in TFFM08. Curie & Ising IFM The Department of Physics, Chemistry and Biology Lab 70 in TFFM08 Curie & Ising NAME PERS. -NUMBER DATE APPROVED Rev Aug 09 Agne 1 Introduction Magnetic materials are all around us, and understanding

More information

Time-Dependent Statistical Mechanics 1. Introduction

Time-Dependent Statistical Mechanics 1. Introduction Time-Dependent Statistical Mechanics 1. Introduction c Hans C. Andersen Announcements September 24, 2009 Lecture 1 9/22/09 1 Topics of concern in the course We shall be concerned with the time dependent

More information

Why Water Freezes (A probabilistic view of phase transitions)

Why Water Freezes (A probabilistic view of phase transitions) Why Water Freezes (A probabilistic view of phase transitions) Mark Huber Dept. of Mathematics and Institute of Statistics and Decision Sciences Duke University mhuber@math.duke.edu www.math.duke.edu/~mhuber

More information

Periods and clusters in Ising cellular automata

Periods and clusters in Ising cellular automata J. Phys. A: Math. Gen. 20 (1987) 4939-4948. Printed in the UK Periods and clusters in Ising cellular automata H J Herrmanni, H 0 Carmesin$ and D Stauffergll t SPhT, CEN Saclay, 91191 Gif-sur-Yvette, France

More information

What is Classical Molecular Dynamics?

What is Classical Molecular Dynamics? What is Classical Molecular Dynamics? Simulation of explicit particles (atoms, ions,... ) Particles interact via relatively simple analytical potential functions Newton s equations of motion are integrated

More information

Numerical Analysis of 2-D Ising Model. Ishita Agarwal Masters in Physics (University of Bonn) 17 th March 2011

Numerical Analysis of 2-D Ising Model. Ishita Agarwal Masters in Physics (University of Bonn) 17 th March 2011 Numerical Analysis of 2-D Ising Model By Ishita Agarwal Masters in Physics (University of Bonn) 17 th March 2011 Contents Abstract Acknowledgment Introduction Computational techniques Numerical Analysis

More information

3.320 Lecture 18 (4/12/05)

3.320 Lecture 18 (4/12/05) 3.320 Lecture 18 (4/12/05) Monte Carlo Simulation II and free energies Figure by MIT OCW. General Statistical Mechanics References D. Chandler, Introduction to Modern Statistical Mechanics D.A. McQuarrie,

More information

IV. Classical Statistical Mechanics

IV. Classical Statistical Mechanics IV. Classical Statistical Mechanics IV.A General Definitions Statistical Mechanics is a probabilistic approach to equilibrium macroscopic properties of large numbers of degrees of freedom. As discussed

More information

Critical Exponents. From P. Chaikin and T Lubensky Principles of Condensed Matter Physics

Critical Exponents. From P. Chaikin and T Lubensky Principles of Condensed Matter Physics Critical Exponents From P. Chaikin and T Lubensky Principles of Condensed Matter Physics Notice that convention allows for different exponents on either side of the transition, but often these are found

More information

Phase Transition & Approximate Partition Function In Ising Model and Percolation In Two Dimension: Specifically For Square Lattices

Phase Transition & Approximate Partition Function In Ising Model and Percolation In Two Dimension: Specifically For Square Lattices IOSR Journal of Applied Physics (IOSR-JAP) ISS: 2278-4861. Volume 2, Issue 3 (ov. - Dec. 2012), PP 31-37 Phase Transition & Approximate Partition Function In Ising Model and Percolation In Two Dimension:

More information

Physics 562: Statistical Mechanics Spring 2002, James P. Sethna Prelim, due Wednesday, March 13 Latest revision: March 22, 2002, 10:9

Physics 562: Statistical Mechanics Spring 2002, James P. Sethna Prelim, due Wednesday, March 13 Latest revision: March 22, 2002, 10:9 Physics 562: Statistical Mechanics Spring 2002, James P. Sethna Prelim, due Wednesday, March 13 Latest revision: March 22, 2002, 10:9 Open Book Exam Work on your own for this exam. You may consult your

More information

Computer simulations as concrete models for student reasoning

Computer simulations as concrete models for student reasoning Computer simulations as concrete models for student reasoning Jan Tobochnik Department of Physics Kalamazoo College Kalamazoo MI 49006 In many thermal physics courses, students become preoccupied with

More information

Advanced Computation for Complex Materials

Advanced Computation for Complex Materials Advanced Computation for Complex Materials Computational Progress is brainpower limited, not machine limited Algorithms Physics Major progress in algorithms Quantum Monte Carlo Density Matrix Renormalization

More information

Statistical Physics. Solutions Sheet 11.

Statistical Physics. Solutions Sheet 11. Statistical Physics. Solutions Sheet. Exercise. HS 0 Prof. Manfred Sigrist Condensation and crystallization in the lattice gas model. The lattice gas model is obtained by dividing the volume V into microscopic

More information

Phase transition and spontaneous symmetry breaking

Phase transition and spontaneous symmetry breaking Phys60.nb 111 8 Phase transition and spontaneous symmetry breaking 8.1. Questions: Q1: Symmetry: if a the Hamiltonian of a system has certain symmetry, can the system have a lower symmetry? Q: Analyticity:

More information

Monte Carlo Methods. Ensembles (Chapter 5) Biased Sampling (Chapter 14) Practical Aspects

Monte Carlo Methods. Ensembles (Chapter 5) Biased Sampling (Chapter 14) Practical Aspects Monte Carlo Methods Ensembles (Chapter 5) Biased Sampling (Chapter 14) Practical Aspects Lecture 1 2 Lecture 1&2 3 Lecture 1&3 4 Different Ensembles Ensemble ame Constant (Imposed) VT Canonical,V,T P PT

More information

PHYSICS 219 Homework 2 Due in class, Wednesday May 3. Makeup lectures on Friday May 12 and 19, usual time. Location will be ISB 231 or 235.

PHYSICS 219 Homework 2 Due in class, Wednesday May 3. Makeup lectures on Friday May 12 and 19, usual time. Location will be ISB 231 or 235. PHYSICS 219 Homework 2 Due in class, Wednesday May 3 Note: Makeup lectures on Friday May 12 and 19, usual time. Location will be ISB 231 or 235. No lecture: May 8 (I m away at a meeting) and May 29 (holiday).

More information

A Nobel Prize for Molecular Dynamics and QM/MM What is Classical Molecular Dynamics? Simulation of explicit particles (atoms, ions,... ) Particles interact via relatively simple analytical potential

More information

Condensed Matter Physics Prof. G. Rangarajan Department of Physics Indian Institute of Technology, Madras

Condensed Matter Physics Prof. G. Rangarajan Department of Physics Indian Institute of Technology, Madras Condensed Matter Physics Prof. G. Rangarajan Department of Physics Indian Institute of Technology, Madras Lecture - 10 The Free Electron Theory of Metals - Electrical Conductivity (Refer Slide Time: 00:20)

More information

Clusters and Percolation

Clusters and Percolation Chapter 6 Clusters and Percolation c 2012 by W. Klein, Harvey Gould, and Jan Tobochnik 5 November 2012 6.1 Introduction In this chapter we continue our investigation of nucleation near the spinodal. We

More information

M02M.1 Particle in a Cone

M02M.1 Particle in a Cone Part I Mechanics M02M.1 Particle in a Cone M02M.1 Particle in a Cone A small particle of mass m is constrained to slide, without friction, on the inside of a circular cone whose vertex is at the origin

More information

CHEM-UA 652: Thermodynamics and Kinetics

CHEM-UA 652: Thermodynamics and Kinetics 1 CHEM-UA 652: Thermodynamics and Kinetics Notes for Lecture 2 I. THE IDEAL GAS LAW In the last lecture, we discussed the Maxwell-Boltzmann velocity and speed distribution functions for an ideal gas. Remember

More information

Computational Laboratory: Monte Carlo for Phase Stability Calculations

Computational Laboratory: Monte Carlo for Phase Stability Calculations Computational Laboratory: Monte Carlo for Phase Stability Calculations Dane Morgan University of Wisconsin, ddmorgan@wisc.edu SUMMER SCHOOL ON COMPUTATIONAL MATERIALS SCIENCE Hands-on introduction to Electronic

More information

Introduction to the Renormalization Group

Introduction to the Renormalization Group Introduction to the Renormalization Group Gregory Petropoulos University of Colorado Boulder March 4, 2015 1 / 17 Summary Flavor of Statistical Physics Universality / Critical Exponents Ising Model Renormalization

More information

Introduction Statistical Thermodynamics. Monday, January 6, 14

Introduction Statistical Thermodynamics. Monday, January 6, 14 Introduction Statistical Thermodynamics 1 Molecular Simulations Molecular dynamics: solve equations of motion Monte Carlo: importance sampling r 1 r 2 r n MD MC r 1 r 2 2 r n 2 3 3 4 4 Questions How can

More information

Thermodynamics and States of Matter

Thermodynamics and States of Matter Thermodynamics and States of Matter There are three states (also called phases) ) of matter. The picture to the side represents the same chemical substance, just in different states. There are three states

More information

REVIEW: Derivation of the Mean Field Result

REVIEW: Derivation of the Mean Field Result Lecture 18: Mean Field and Metropolis Ising Model Solutions 1 REVIEW: Derivation of the Mean Field Result The Critical Temperature Dependence The Mean Field Approximation assumes that there will be an

More information

Introduction. Chapter The Purpose of Statistical Mechanics

Introduction. Chapter The Purpose of Statistical Mechanics Chapter 1 Introduction 1.1 The Purpose of Statistical Mechanics Statistical Mechanics is the mechanics developed to treat a collection of a large number of atoms or particles. Such a collection is, for

More information

Metropolis Monte Carlo simulation of the Ising Model

Metropolis Monte Carlo simulation of the Ising Model Metropolis Monte Carlo simulation of the Ising Model Krishna Shrinivas (CH10B026) Swaroop Ramaswamy (CH10B068) May 10, 2013 Modelling and Simulation of Particulate Processes (CH5012) Introduction The Ising

More information

Spontaneous Symmetry Breaking

Spontaneous Symmetry Breaking Spontaneous Symmetry Breaking Second order phase transitions are generally associated with spontaneous symmetry breaking associated with an appropriate order parameter. Identifying symmetry of the order

More information

Temperature and Pressure Controls

Temperature and Pressure Controls Ensembles Temperature and Pressure Controls 1. (E, V, N) microcanonical (constant energy) 2. (T, V, N) canonical, constant volume 3. (T, P N) constant pressure 4. (T, V, µ) grand canonical #2, 3 or 4 are

More information

Q: How can quantum computers break ecryption?

Q: How can quantum computers break ecryption? Q: How can quantum computers break ecryption? Posted on February 21, 2011 by The Physicist Physicist: What follows is the famous Shor algorithm, which can break any RSA encryption key. The problem: RSA,

More information

Any live cell with less than 2 live neighbours dies. Any live cell with 2 or 3 live neighbours lives on to the next step.

Any live cell with less than 2 live neighbours dies. Any live cell with 2 or 3 live neighbours lives on to the next step. 2. Cellular automata, and the SIRS model In this Section we consider an important set of models used in computer simulations, which are called cellular automata (these are very similar to the so-called

More information

The Phase Transition of the 2D-Ising Model

The Phase Transition of the 2D-Ising Model The Phase Transition of the 2D-Ising Model Lilian Witthauer and Manuel Dieterle Summer Term 2007 Contents 1 2D-Ising Model 2 1.1 Calculation of the Physical Quantities............... 2 2 Location of the

More information

Understanding Molecular Simulation 2009 Monte Carlo and Molecular Dynamics in different ensembles. Srikanth Sastry

Understanding Molecular Simulation 2009 Monte Carlo and Molecular Dynamics in different ensembles. Srikanth Sastry JNCASR August 20, 21 2009 Understanding Molecular Simulation 2009 Monte Carlo and Molecular Dynamics in different ensembles Srikanth Sastry Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore

More information

Markov Chain Monte Carlo The Metropolis-Hastings Algorithm

Markov Chain Monte Carlo The Metropolis-Hastings Algorithm Markov Chain Monte Carlo The Metropolis-Hastings Algorithm Anthony Trubiano April 11th, 2018 1 Introduction Markov Chain Monte Carlo (MCMC) methods are a class of algorithms for sampling from a probability

More information

Basics of Statistical Mechanics

Basics of Statistical Mechanics Basics of Statistical Mechanics Review of ensembles Microcanonical, canonical, Maxwell-Boltzmann Constant pressure, temperature, volume, Thermodynamic limit Ergodicity (see online notes also) Reading assignment:

More information

Intro. Each particle has energy that we assume to be an integer E i. Any single-particle energy is equally probable for exchange, except zero, assume

Intro. Each particle has energy that we assume to be an integer E i. Any single-particle energy is equally probable for exchange, except zero, assume Intro Take N particles 5 5 5 5 5 5 Each particle has energy that we assume to be an integer E i (above, all have 5) Particle pairs can exchange energy E i! E i +1andE j! E j 1 5 4 5 6 5 5 Total number

More information

Phase Transitions and Critical Behavior:

Phase Transitions and Critical Behavior: II Phase Transitions and Critical Behavior: A. Phenomenology (ibid., Chapter 10) B. mean field theory (ibid., Chapter 11) C. Failure of MFT D. Phenomenology Again (ibid., Chapter 12) // Windsor Lectures

More information

1. Introductory Examples

1. Introductory Examples 1. Introductory Examples We introduce the concept of the deterministic and stochastic simulation methods. Two problems are provided to explain the methods: the percolation problem, providing an example

More information

Name Date Class THE NATURE OF GASES

Name Date Class THE NATURE OF GASES 13.1 THE NATURE OF GASES Section Review Objectives Describe the assumptions of the kinetic theory as it applies to gases Interpret gas pressure in terms of kinetic theory Define the relationship between

More information

Mitchell Chapter 10. Living systems are open systems that exchange energy, materials & information

Mitchell Chapter 10. Living systems are open systems that exchange energy, materials & information Living systems compute Mitchell Chapter 10 Living systems are open systems that exchange energy, materials & information E.g. Erwin Shrodinger (1944) & Lynn Margulis (2000) books: What is Life? discuss

More information

3.091 Introduction to Solid State Chemistry. Lecture Notes No. 6a BONDING AND SURFACES

3.091 Introduction to Solid State Chemistry. Lecture Notes No. 6a BONDING AND SURFACES 3.091 Introduction to Solid State Chemistry Lecture Notes No. 6a BONDING AND SURFACES 1. INTRODUCTION Surfaces have increasing importance in technology today. Surfaces become more important as the size

More information

Classify each of these statements as always true, AT; sometimes true, ST; or never true, NT.

Classify each of these statements as always true, AT; sometimes true, ST; or never true, NT. Chapter 11 THE NATURE OF GASES States of Matter Describe the motion of gas particles according to the kinetic theory Interpret gas pressure in terms of kinetic theory Key Terms: 1. kinetic energy 2. gas

More information

Kinetic theory. Collective behaviour of large systems Statistical basis for the ideal gas equation Deviations from ideality

Kinetic theory. Collective behaviour of large systems Statistical basis for the ideal gas equation Deviations from ideality Kinetic theory Collective behaviour of large systems Statistical basis for the ideal gas equation Deviations from ideality Learning objectives Describe physical basis for the kinetic theory of gases Describe

More information

Computational Physics (6810): Session 13

Computational Physics (6810): Session 13 Computational Physics (6810): Session 13 Dick Furnstahl Nuclear Theory Group OSU Physics Department April 14, 2017 6810 Endgame Various recaps and followups Random stuff (like RNGs :) Session 13 stuff

More information

Numerical Studies of the Quantum Adiabatic Algorithm

Numerical Studies of the Quantum Adiabatic Algorithm Numerical Studies of the Quantum Adiabatic Algorithm A.P. Young Work supported by Colloquium at Universität Leipzig, November 4, 2014 Collaborators: I. Hen, M. Wittmann, E. Farhi, P. Shor, D. Gosset, A.

More information

Simulations with MM Force Fields. Monte Carlo (MC) and Molecular Dynamics (MD) Video II.vi

Simulations with MM Force Fields. Monte Carlo (MC) and Molecular Dynamics (MD) Video II.vi Simulations with MM Force Fields Monte Carlo (MC) and Molecular Dynamics (MD) Video II.vi Some slides taken with permission from Howard R. Mayne Department of Chemistry University of New Hampshire Walking

More information

4/18/2011. Titus Beu University Babes-Bolyai Department of Theoretical and Computational Physics Cluj-Napoca, Romania

4/18/2011. Titus Beu University Babes-Bolyai Department of Theoretical and Computational Physics Cluj-Napoca, Romania 1. Introduction Titus Beu University Babes-Bolyai Department of Theoretical and Computational Physics Cluj-Napoca, Romania Bibliography Computer experiments Ensemble averages and time averages Molecular

More information

J ij S i S j B i S i (1)

J ij S i S j B i S i (1) LECTURE 18 The Ising Model (References: Kerson Huang, Statistical Mechanics, Wiley and Sons (1963) and Colin Thompson, Mathematical Statistical Mechanics, Princeton Univ. Press (1972)). One of the simplest

More information

Collective Effects. Equilibrium and Nonequilibrium Physics

Collective Effects. Equilibrium and Nonequilibrium Physics 1 Collective Effects in Equilibrium and Nonequilibrium Physics: Lecture 2, 24 March 2006 1 Collective Effects in Equilibrium and Nonequilibrium Physics Website: http://cncs.bnu.edu.cn/mccross/course/ Caltech

More information

First Problem Set for Physics 847 (Statistical Physics II)

First Problem Set for Physics 847 (Statistical Physics II) First Problem Set for Physics 847 (Statistical Physics II) Important dates: Feb 0 0:30am-:8pm midterm exam, Mar 6 9:30am-:8am final exam Due date: Tuesday, Jan 3. Review 0 points Let us start by reviewing

More information

Chapter 14 Temperature and Heat

Chapter 14 Temperature and Heat Nicholas J. Giordano www.cengage.com/physics/giordano Chapter 14 Temperature and Heat Thermodynamics Starting a different area of physics called thermodynamics Thermodynamics focuses on energy rather than

More information

A Monte Carlo Implementation of the Ising Model in Python

A Monte Carlo Implementation of the Ising Model in Python A Monte Carlo Implementation of the Ising Model in Python Alexey Khorev alexey.s.khorev@gmail.com 2017.08.29 Contents 1 Theory 1 1.1 Introduction...................................... 1 1.2 Model.........................................

More information

Advanced sampling. fluids of strongly orientation-dependent interactions (e.g., dipoles, hydrogen bonds)

Advanced sampling. fluids of strongly orientation-dependent interactions (e.g., dipoles, hydrogen bonds) Advanced sampling ChE210D Today's lecture: methods for facilitating equilibration and sampling in complex, frustrated, or slow-evolving systems Difficult-to-simulate systems Practically speaking, one is

More information

Immigration, integration and ghetto formation

Immigration, integration and ghetto formation Immigration, integration and ghetto formation arxiv:cond-mat/0209242v1 10 Sep 2002 Hildegard Meyer-Ortmanns School of Engineering and Science International University Bremen P.O.Box 750561 D-28725 Bremen,

More information

Statistical Mechanics in a Nutshell

Statistical Mechanics in a Nutshell Chapter 2 Statistical Mechanics in a Nutshell Adapted from: Understanding Molecular Simulation Daan Frenkel and Berend Smit Academic Press (2001) pp. 9-22 11 2.1 Introduction In this course, we will treat

More information

Table of Contents [ttc]

Table of Contents [ttc] Table of Contents [ttc] 1. Equilibrium Thermodynamics I: Introduction Thermodynamics overview. [tln2] Preliminary list of state variables. [tln1] Physical constants. [tsl47] Equations of state. [tln78]

More information

Molecular Modeling of Matter

Molecular Modeling of Matter Molecular Modeling of Matter Keith E. Gubbins Lecture 1: Introduction to Statistical Mechanics and Molecular Simulation Common Assumptions Can treat kinetic energy of molecular motion and potential energy

More information

Chaos, Quantum Mechanics, and Computers

Chaos, Quantum Mechanics, and Computers What do Climate Modeling and Quantum Mechanics have in common? Chaos, Quantum Mechanics, and Computers Computer simulation: now one of the most important ingredients for progress... Dark Matter Technology

More information

Markov Chain Monte Carlo Simulations and Their Statistical Analysis An Overview

Markov Chain Monte Carlo Simulations and Their Statistical Analysis An Overview Markov Chain Monte Carlo Simulations and Their Statistical Analysis An Overview Bernd Berg FSU, August 30, 2005 Content 1. Statistics as needed 2. Markov Chain Monte Carlo (MC) 3. Statistical Analysis

More information

Quantum ideal gases: bosons

Quantum ideal gases: bosons Quantum ideal gases: bosons Any particle with integer spin is a boson. In this notes, we will discuss the main features of the statistics of N non-interacting bosons of spin S (S =,,...). We will only

More information

MD Thermodynamics. Lecture 12 3/26/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky

MD Thermodynamics. Lecture 12 3/26/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky MD Thermodynamics Lecture 1 3/6/18 1 Molecular dynamics The force depends on positions only (not velocities) Total energy is conserved (micro canonical evolution) Newton s equations of motion (second order

More information

LECTURE 10: Monte Carlo Methods II

LECTURE 10: Monte Carlo Methods II 1 LECTURE 10: Monte Carlo Methods II In this chapter, we discuss more advanced Monte Carlo techniques, starting with the topics of percolation and random walks, and then continuing to equilibrium statistical

More information

Statistical Thermodynamics and Monte-Carlo Evgenii B. Rudnyi and Jan G. Korvink IMTEK Albert Ludwig University Freiburg, Germany

Statistical Thermodynamics and Monte-Carlo Evgenii B. Rudnyi and Jan G. Korvink IMTEK Albert Ludwig University Freiburg, Germany Statistical Thermodynamics and Monte-Carlo Evgenii B. Rudnyi and Jan G. Korvink IMTEK Albert Ludwig University Freiburg, Germany Preliminaries Learning Goals From Micro to Macro Statistical Mechanics (Statistical

More information

Lecture 2: Zero law of thermodynamics

Lecture 2: Zero law of thermodynamics Lecture 2: Zero law of thermodynamics 1. Thermometers and temperature scales 2. Thermal contact and thermal equilibrium 3. Zeroth law of thermodynamics 1. Thermometers and Temperature scales We often associate

More information

半導體元件與物理. Semiconductor Devices and physics 許正興國立聯合大學電機工程學系 聯大電機系電子材料與元件應用實驗室

半導體元件與物理. Semiconductor Devices and physics 許正興國立聯合大學電機工程學系 聯大電機系電子材料與元件應用實驗室 半導體元件與物理 Semiconductor Devices and physics 許正興國立聯合大學電機工程學系 1. Crystal Structure of Solids 2. Quantum Theory of Solids 3. Semiconductor in Equilibrium and Carrier Transport phenomena 4. PN Junction and

More information

Multicanonical methods

Multicanonical methods Multicanonical methods Normal Monte Carlo algorithms sample configurations with the Boltzmann weight p exp( βe). Sometimes this is not desirable. Example: if a system has a first order phase transitions

More information

2. Thermodynamics. Introduction. Understanding Molecular Simulation

2. Thermodynamics. Introduction. Understanding Molecular Simulation 2. Thermodynamics Introduction Molecular Simulations Molecular dynamics: solve equations of motion r 1 r 2 r n Monte Carlo: importance sampling r 1 r 2 r n How do we know our simulation is correct? Molecular

More information

Advanced Monte Carlo Methods Problems

Advanced Monte Carlo Methods Problems Advanced Monte Carlo Methods Problems September-November, 2012 Contents 1 Integration with the Monte Carlo method 2 1.1 Non-uniform random numbers.......................... 2 1.2 Gaussian RNG..................................

More information

Physics 115/242 Monte Carlo simulations in Statistical Physics

Physics 115/242 Monte Carlo simulations in Statistical Physics Physics 115/242 Monte Carlo simulations in Statistical Physics Peter Young (Dated: May 12, 2007) For additional information on the statistical Physics part of this handout, the first two sections, I strongly

More information

The XY-Model. David-Alexander Robinson Sch th January 2012

The XY-Model. David-Alexander Robinson Sch th January 2012 The XY-Model David-Alexander Robinson Sch. 08332461 17th January 2012 Contents 1 Introduction & Theory 2 1.1 The XY-Model............................... 2 1.2 Markov Chains...............................

More information

Let s start by reviewing what we learned last time. Here is the basic line of reasoning for Einstein Solids

Let s start by reviewing what we learned last time. Here is the basic line of reasoning for Einstein Solids Chapter 5 In this chapter we want to review the concept of irreversibility in more detail and see how it comes from the multiplicity of states. In addition, we want to introduce the following new topics:

More information

CHM Solids, Liquids, and Phase Changes (r15) Charles Taylor 1/9

CHM Solids, Liquids, and Phase Changes (r15) Charles Taylor 1/9 CHM 111 - Solids, Liquids, and Phase Changes (r15) - 2015 Charles Taylor 1/9 Introduction In CHM 110, we used kinetic theory to explain the behavior of gases. Now, we will discuss solids and liquids. While

More information

Phase Transitions in Physics and Computer Science. Cristopher Moore University of New Mexico and the Santa Fe Institute

Phase Transitions in Physics and Computer Science. Cristopher Moore University of New Mexico and the Santa Fe Institute Phase Transitions in Physics and Computer Science Cristopher Moore University of New Mexico and the Santa Fe Institute Magnetism When cold enough, Iron will stay magnetized, and even magnetize spontaneously

More information

Mind the gap Solving optimization problems with a quantum computer

Mind the gap Solving optimization problems with a quantum computer Mind the gap Solving optimization problems with a quantum computer A.P. Young http://physics.ucsc.edu/~peter Work supported by Talk at Saarbrücken University, November 5, 2012 Collaborators: I. Hen, E.

More information

Lecture 8: Chemical Equilibrium for the Autodissociation of Pure Water

Lecture 8: Chemical Equilibrium for the Autodissociation of Pure Water Lecture 8: Chemical Equilibrium for the Autodissociation of Pure Water One of the great things about college courses is that they tend to shake the foundation for the stuff you learned to be true in grade

More information

Physics 127b: Statistical Mechanics. Second Order Phase Transitions. The Ising Ferromagnet

Physics 127b: Statistical Mechanics. Second Order Phase Transitions. The Ising Ferromagnet Physics 127b: Statistical Mechanics Second Order Phase ransitions he Ising Ferromagnet Consider a simple d-dimensional lattice of N classical spins that can point up or down, s i =±1. We suppose there

More information

Thermodynamics Test Wednesday 12/20

Thermodynamics Test Wednesday 12/20 Thermodynamics Test Wednesday 12/20 HEAT AND TEMPERATURE 1 Temperature Temperature: A measure of how hot (or cold) something is Specifically, a measure of the average kinetic energy of the particles in

More information

A New Algorithm for Monte Carlo Simulation of king Spin Systems* A. B. BORTZ M. H. KALOS J. L. LEBOWITZ

A New Algorithm for Monte Carlo Simulation of king Spin Systems* A. B. BORTZ M. H. KALOS J. L. LEBOWITZ JOURNAL OF COMPUTATIONAL PHYSICS 17, lo-18 (1975) A New Algorithm for Monte Carlo Simulation of king Spin Systems* A. B. BORTZ Berfer Graduate School of Science, Yeshiva University, New York, New York

More information

The Quantum Adiabatic Algorithm

The Quantum Adiabatic Algorithm The Quantum Adiabatic Algorithm A.P. Young http://physics.ucsc.edu/~peter Work supported by Talk at SMQS-IP2011, Jülich, October 18, 2011 The Quantum Adiabatic Algorithm A.P. Young http://physics.ucsc.edu/~peter

More information

The Monte Carlo Method in Condensed Matter Physics

The Monte Carlo Method in Condensed Matter Physics The Monte Carlo Method in Condensed Matter Physics Edited by K. Binder With Contributions by A. Baumgärtner K. Binder A.N. Burkitt D.M. Ceperley H. De Raedt A.M. Ferrenberg D.W. Heermann H.J. Herrmann

More information

Magnets, 1D quantum system, and quantum Phase transitions

Magnets, 1D quantum system, and quantum Phase transitions 134 Phys620.nb 10 Magnets, 1D quantum system, and quantum Phase transitions In 1D, fermions can be mapped into bosons, and vice versa. 10.1. magnetization and frustrated magnets (in any dimensions) Consider

More information

Modeling of Micro-Fluidics by a Dissipative Particle Dynamics Method. Justyna Czerwinska

Modeling of Micro-Fluidics by a Dissipative Particle Dynamics Method. Justyna Czerwinska Modeling of Micro-Fluidics by a Dissipative Particle Dynamics Method Justyna Czerwinska Scales and Physical Models years Time hours Engineering Design Limit Process Design minutes Continious Mechanics

More information

the energy of motion!

the energy of motion! What are the molecules of matter doing all the time?! Heat and Temperature! Notes! All matter is composed of continually jiggling atoms or molecules! The jiggling is! If something is vibrating, what kind

More information

Sedimentation and creaming An introduction

Sedimentation and creaming An introduction Sedimentation and creaming An introduction Hervé This (INRA/AgroParisTech) 24 August 2013 Sedimentation and creaming are two analogous phenomena, but in one case, "particles" in the liquid have a density

More information

Chapter 14 Heat and Temperature Notes

Chapter 14 Heat and Temperature Notes Chapter 14 Heat and Temperature Notes Section 1: Temperature The degree of or of an object. Related to the of an object s atoms or molecules What makes something hot? o Particles that make up o They have

More information

Chapter 4: Going from microcanonical to canonical ensemble, from energy to temperature.

Chapter 4: Going from microcanonical to canonical ensemble, from energy to temperature. Chapter 4: Going from microcanonical to canonical ensemble, from energy to temperature. All calculations in statistical mechanics can be done in the microcanonical ensemble, where all copies of the system

More information

Intermolecular Forces and Monte-Carlo Integration 열역학특수연구

Intermolecular Forces and Monte-Carlo Integration 열역학특수연구 Intermolecular Forces and Monte-Carlo Integration 열역학특수연구 2003.3.28 Source of the lecture note. J.M.Prausnitz and others, Molecular Thermodynamics of Fluid Phase Equiliria Atkins, Physical Chemistry Lecture

More information

Exercise 2: Solvating the Structure Before you continue, follow these steps: Setting up Periodic Boundary Conditions

Exercise 2: Solvating the Structure Before you continue, follow these steps: Setting up Periodic Boundary Conditions Exercise 2: Solvating the Structure HyperChem lets you place a molecular system in a periodic box of water molecules to simulate behavior in aqueous solution, as in a biological system. In this exercise,

More information

Statistical Physics of The Symmetric Group. Mobolaji Williams Harvard Physics Oral Qualifying Exam Dec. 12, 2016

Statistical Physics of The Symmetric Group. Mobolaji Williams Harvard Physics Oral Qualifying Exam Dec. 12, 2016 Statistical Physics of The Symmetric Group Mobolaji Williams Harvard Physics Oral Qualifying Exam Dec. 12, 2016 1 Theoretical Physics of Living Systems Physics Particle Physics Condensed Matter Astrophysics

More information

Module 5: Rise and Fall of the Clockwork Universe. You should be able to demonstrate and show your understanding of:

Module 5: Rise and Fall of the Clockwork Universe. You should be able to demonstrate and show your understanding of: OCR B Physics H557 Module 5: Rise and Fall of the Clockwork Universe You should be able to demonstrate and show your understanding of: 5.2: Matter Particle model: A gas consists of many very small, rapidly

More information

4. The Green Kubo Relations

4. The Green Kubo Relations 4. The Green Kubo Relations 4.1 The Langevin Equation In 1828 the botanist Robert Brown observed the motion of pollen grains suspended in a fluid. Although the system was allowed to come to equilibrium,

More information

In-class exercises. Day 1

In-class exercises. Day 1 Physics 4488/6562: Statistical Mechanics http://www.physics.cornell.edu/sethna/teaching/562/ Material for Week 8 Exercises due Mon March 19 Last correction at March 5, 2018, 8:48 am c 2017, James Sethna,

More information