Hidden Markov Models,99,100! Markov, here I come!

Size: px
Start display at page:

Download "Hidden Markov Models,99,100! Markov, here I come!"

Transcription

1 Hidden Markov Models,99,100! Markov, here I come! /413 Principles of Autonomy and Decision-Making Pedro Santana (psantana@mit.edu) October 7 th, Based on material by Brian Williams and Emilio Frazzoli.

2 Assignments Problem set 4 Out last Wednesday. Due at midnight tonight. Problem set 5 Out today and due in a week. Readings Today: Probabilistic Reasoning Over Time [AIMA], Ch /41

3 Today s topics 1. Motivation 2. Probability recap Bayes Rule Marginalization 3. Markov chains 4. Hidden Markov models 5. HMM algorithms Prediction Filtering Smoothing Decoding Learning (Baum-Welch) Won t be covered today and significantly more involved, but you might want to learn more about it. 3/41

4 1. Motivation Why are we learning this? 4/41

5 Robot navigation 5/41

6 Robust sensor fusion (visual tracking) 6/41

7 Natural language processing (NLP) Li-ve long and pros-per 7/41

8 2. Probability recap Probability is common sense reduced to calculation. Pierre-Simon Laplace 8/41

9 Bayes rule Joint Conditional Marginal Pr A, B = Pr A B Pr(B) A A, B: random variables B Pr A, B = Pr B A Pr(A) Pr A B Pr B = Pr B A Pr(A) Pr A B = Pr B A Pr(A) Pr B Bayes rule! Pr B A Pr(A) 9/41

10 Marginalization & graphical models A Pr(B A) A causes B B Marginalizes A out Prior on cause Pr B = Distribution of the effect B a Pr(A = a, B) = Pr B A = a Pr(A = a) a Conditioning on cause makes the computation easier. 10/41

11 Our goal for today How can we estimate the hidden state of a system from noisy sensor observations? 11/41

12 3. Markov chains Andrey Markov 12/41

13 State transitions over time State S S t : state at time t (random variable) S t =s: particular value of S t (not random) s S, S is the state space. Time S 0 S 1 S t S t+1 S t+2 13/41

14 State transitions over time Pr S 0, S 1,, S t, S t+1 = Pr(S 0:t+1 ) Pr S 0:t+1 = Pr(S 0 ) Pr(S 1 S 0 ) Pr(S 2 S 0:1 ) Pr S 3 S 0:2 Pr(S 4 S 0:3 ) Pr S t S 0:t 1 Past influences present models Models grow exponentially with time! 14/41

15 The Markov assumption Pr S t S 0:t 1 Path to S t isn t relevant, given knowledge of S t-1. Definition: Markov chain = Pr S t S t 1 Constant size! If a sequence of random variable S 0,S 1,,S t+1 is such that Pr S 0:t+1 = Pr(S 0 ) Pr(S 1 S 0 ) Pr(S 2 S 1 ) = Pr S 0 we say that S 0,S 1,,S t+1 form a Markov chain. t+1 i=1 Pr S i S i 1, 15/41

16 Markov chains S 0 S 1 S t S t+1 S t+2 S = Pr S t S t 1 : d d matrix T t Discrete set with d values. T t i,j = Pr S t = i S t 1 = j If T t does not depend on t Markov chain is stationary. T i,j = Pr S t = i S t 1 = j, t 16/41

17 (Very) Simple Wall Street L R H F S F L R H H Stock price* H H: High R: Rising F: Falling L: Low S: Steady T H k-1 R k-1 F k-1 L k-1 S k-1 H k R k F k L k 0.1 S k R S F L *Pedagogical example. In no circumstance shall the author be responsible for financial losses due to decisions based on this model. 17/41

18 4. Hidden Markov models (HMMs) Andrey Markov 18/41

19 Observing hidden Markov chains S 0 S 1 S t S t+1 S t+2 Hidden O 1 O t O t+1 O t+2 Observable Definition: Hidden Markov Model (HMM) A sequence of random variables O 1,O 2,,O t,, is an HMM if the distribution of O t is completely defined by the current (hidden) state S t according to Pr(O t S t ), where S t is part of an underlying Markov chain. 19/41

20 Hidden Markov models S 0 S 1 S t S t+1 S t+2 Hidden O 1 O t O t+1 O t+2 Observable O = Pr O t S t : d m matrix M Discrete set with m values. M i,j = Pr O t = j S t = i 20/41

21 The dishonest casino T F k-1 L k-1 F k Fair L k Loaded Hidden states Observations M F k 1/6 1/6 1/6 1/6 1/6 1/6 L k 1/10 1/10 1/10 1/10 1/10 1/2 21/41

22 Queries Lower case: these are known values, not random variables. o 1,o 2,,ot = o 1:t Time 0 t Given the available history of observations, what s the belief about the current hidden state? Pr(S t o 1:t ) Filtering Given the available history of observations, what s the belief about a past hidden state? Pr S k o 1:t, k < t Smoothing 22/41

23 Queries Lower case: these are known values, not random variables. o 1,o 2,,ot = o 1:t Time 0 t Given the available history of observations, what s the belief about a future hidden state? Pr S k o 1:t, k > t Prediction Given the available history of observations, what s the most likely sequence of hidden states? s 0:t = arg max s 0:t Pr(S 0:t = s 0:t o 1:t ) Decoding 23/41

24 5. HMM algorithms Where we ll learn how to compute answers to the previously seen HMM queries. 24/41

25 Notation Random variable! Pr S t Probability distribution of S t Vector of d probability values. Pr S t = s = Pr s t Probability of observing S t = s according to Pr(S t ) Probability [0,1] 25/41

26 Filtering (forward) Given the available history of observations, what s the belief about the current hidden state? Pr S t o 1:t = p t Pr S t o 1:t = Pr S t o t, o 1:t 1 Pr o t S t, o 1:t 1 Pr(S t o 1:t 1 ) Bayes = Pr o t S t Pr(S t o 1:t 1 ) Obs. model Pr S t o 1:t 1 = = d i=1 d i=1 Pr(S t S t 1 = i, o 1:t 1 ) Pr(S t 1 = i o 1:t 1 ) Pr(S t S t 1 = i) Pr(S t 1 = i o 1:t 1 ) Recursion! Marg. Trans. model 26/41

27 Filtering Given the available history of observations, what s the belief about the current hidden state? 1. One-step prediction: Pr S t o 1:t 1 = p t = 2. Measurement update: i=1 p t [i] = ηpr(o t S t = i) p t [i] 3. Normalize belief (to get rid of η): p t i p t i η d d, η = j=1 Pr S t o 1:t = p t Pr(S t S t 1 = i) Pr(S t 1 = i o 1:t 1 ) = T p t j p t 1 27/41

28 Prediction Given the available history of observations, what s the belief about a future hidden state? Pr S k o 1:t, k > t Pr S t+1 o 1:t = T p t Previous slide. Pr S t+2 o 1:t = d i=1 Pr(S t+2 S t+1 = i) Pr S t+1 = i o 1:t = T 2 p t Pr S k o 1:t = T k t p t 28/41

29 Smoothing (forward-backward) Given the available history of observations, what s the belief about a past hidden state? Pr S k o 1:t, k < t Pr S k o 1:t Pr(o k+1:t S k ) = = Pr S k o 1:k, o k+1:t Pr(o k+1:t S k, o 1:k )Pr S k o 1:k = Pr(o k+1:t S k )Pr S k o 1:k = = d i=1 d i=1 d i=1 Filtering! Pr o k+1:t S k+1 = i, S k Pr(S k+1 = i S k ) Pr o k+2:t, o k+1 S k+1 = i Pr(S k+1 = i S k ) Bayes Obs. model Marg. Pr o k+2:t S k+1 = i Pr(o k+1 S k+1 = i)pr(s k+1 = i S k ) Recursion! Obs. model 29/41

30 Smoothing Given the available history of observations, what s the belief about a past hidden state? Pr S k o 1:t = p k,t, k < t 1. Perform filtering from 0 to k (forward): Pr S k o 1:k = p k 2. Compute the backward recursion from t to k: Pr(o k+1:t S k ) = b k,t, b m 1,t [i] = d j=1 b t,t = 1 b m,t [j] Pr(o m S m = j)pr(s m = j S m 1 = i), k + 1 m t 3. Combine the two results and normalize: p k,t [i] = b k,t [i] p k [i], p k,t i p k,t i η, η = d j=1 p k,t j 30/41

31 Decoding Given the available history of observations, what s the most likely sequence of hidden states so far? s 0:t = arg max Pr(S 0:t = s 0:t o 1:t ) s 0:t 1 2 d 31/41

32 Decoding (simple algorithm) Given the available history of observations, what s the most likely sequence of hidden states so far? s 0:t = arg max Pr(S 0:t = s 0:t o 1:t ) s 0:t Pr(s 0:t o 1:t ) Pr(o 1:t s 0:t )Pr(s 0:t ) t = Pr(s 0 ) Pr s i s i 1 Pr(o i s i ) i=1 Bayes HMM model 32/41

33 Decoding (simple algorithm) Given the available history of observations, what s the most likely sequence of hidden states so far? s 0:t = arg max Pr(S 0:t = s 0:t o 1:t ) s 0:t Compute all possible state trajectories from 0 to t. ॻ 0:t = {s 0:t s i S,i=0,, t} How big is ॻ 0:t? Choose the most likely trajectory according to s 0:t = arg max Pr s 0 s 0:t ॻ 0:t t i=1 Pr s i s i 1 Pr(o i s i ) d t+1 Can we do better? 33/41

34 Decoding (the Viterbi algorithm) Given the available history of observations, what s the most likely sequence of hidden states so far? s 0:t = arg max Pr(S 0:t = s 0:t o 1:t ) s 0:t Pr(S 0:t o 1:t ) = Pr(S 0:t o 1:t 1, o t ) t-1 t Pr(o t S t )Pr(S t, S 0:t 1 o 1:t 1 ) = Pr o t S t Pr(S t S t 1 )Pr(S 0:t 1 o 1:t 1 ) Recursion! From all paths arriving at s t-1, record only the most likely one. max s 0:t Pr s 0:t o 1:t = max s t,s t 1 Pr o t s t Pr s t s t 1 max s 0:t 1 Pr(s 0:t 1 o 1:t 1 ) 34/41

35 Decoding (the Viterbi algorithm) Given the available history of observations, what s the most likely sequence of hidden states so far? δ k [s]: most likely path ending in s t = s δ 0 [s]: (s), l 0 [s]: Pr(S 0 = s) 1. Expand paths in δ k according to the transition model 2. Update likelihood: l k [s]: likelihood of δ k [s] (unnormalized probability) pred k+1 s = arg max Pr s k+1 = s s k = s l k s, s = 1,, d s δ k+1 s = δ k pred k+1 s. append(s) l k+1 s = Pr(o k+1 s k+1 = s) Pr s k+1 = s s k = pred k+1 s 3. When k=t, choose δ t s with the highest l t s. l k pred k+1 s 35/41

36 Dishonest casino example T F k-1 L k-1 F k Fair L k Loaded Hidden states Observations M F k 1/6 1/6 1/6 1/6 1/6 1/6 L k 1/10 1/10 1/10 1/10 1/10 1/2 36/41

37 Dishonest casino example Pr S 0 = Fair Loaded Filtering Smoothing Fair Loaded Fair Loaded t= Observations = 1,2,4,6,6,6,3,6 T F k-1 L k-1 F k L k M F k 1/6 1/6 1/6 1/6 1/6 1/6 L k 1/10 1/10 1/10 1/10 1/10 1/2 t= t= t= t= t= t= t= t= Coincidence? 37/41

38 Dishonest casino example Pr S 0 = Fair Loaded Observations = 1,2,4,6,6,6,3,6 Filtering (MAP): Smoothing (MAP): Decoding: ['Fair ', 'Fair ', 'Fair ', 'Fair ', 'Fair ', 'Loaded', 'Loaded', 'Loaded', 'Loaded'] ['Fair ', 'Fair ', 'Fair ', 'Loaded ', 'Loaded ', 'Loaded', 'Loaded', 'Loaded', 'Loaded'] t=0: ['Fair'] t=1: ['Fair', 'Fair'] t=2: ['Fair', 'Fair', 'Fair'] t=3: ['Fair', 'Fair', 'Fair', 'Fair'] t=4: ['Fair', 'Fair', 'Fair', 'Fair', 'Fair'] t=5: ['Fair', 'Fair', 'Fair', 'Fair', 'Fair', 'Fair'] t=6: ['Loaded', 'Loaded', 'Loaded', 'Loaded', 'Loaded', 'Loaded', 'Loaded'] t=7: ['Fair', 'Fair', 'Fair', 'Fair', 'Fair', 'Fair', 'Fair', 'Fair'] t=8: ['Loaded', 'Loaded', 'Loaded', 'Loaded', 'Loaded', 'Loaded', 'Loaded', 'Loaded', 'Loaded'] 38/41

39 Borodovsky & Ekisheva (2006), pp DNA A G T C A T G H: High genetic content (coding DNA) L: Low genetic content (non-coding DNA) H L T M A C G T H k-1 L k-1 H k L k H k L k /41

40 Borodovsky & Ekisheva (2006), pp Pr S 0 = High Low Filtering Smoothing H L H L t= Observations = G,G,C,A,C,T,G,A,A T H k-1 L k-1 H k L k M A C G T H k L k t= t= t= t= t= t= t= t= t= /41

41 Borodovsky & Ekisheva (2006), pp Pr S 0 = Observations = G,G,C,A,C,T,G,A,A Filtering (MAP): Smoothing (MAP): Decoding: t=0: t=1: t=2: t=3: t=4: t=5: t=6: t=7: t=8: t=9: ['H/L', 'H', 'H', 'H', 'L', 'H', 'L', 'H', 'L', 'L'] ['H', 'H', 'H', 'H', 'L', 'H', 'L', 'H', 'L', 'L'] ['H'] ['H', 'H'] ['H', 'H', 'H'] ['H', 'H', 'H', 'H'] ['H', 'H', 'H', 'H', 'L'] ['H', 'H', 'H', 'H', 'L', 'L'] ['H', 'H', 'H', 'H', 'L', 'L', 'L'] ['H', 'H', 'H', 'H', 'L', 'L', 'L', 'H'] ['H', 'H', 'H', 'H', 'L', 'L', 'L', 'L', 'L'] ['H', 'H', 'H', 'H', 'L', 'L', 'L', 'L', 'L', 'L'] 41/41

Hidden Markov Models. By Parisa Abedi. Slides courtesy: Eric Xing

Hidden Markov Models. By Parisa Abedi. Slides courtesy: Eric Xing Hidden Markov Models By Parisa Abedi Slides courtesy: Eric Xing i.i.d to sequential data So far we assumed independent, identically distributed data Sequential (non i.i.d.) data Time-series data E.g. Speech

More information

Hidden Markov Models. AIMA Chapter 15, Sections 1 5. AIMA Chapter 15, Sections 1 5 1

Hidden Markov Models. AIMA Chapter 15, Sections 1 5. AIMA Chapter 15, Sections 1 5 1 Hidden Markov Models AIMA Chapter 15, Sections 1 5 AIMA Chapter 15, Sections 1 5 1 Consider a target tracking problem Time and uncertainty X t = set of unobservable state variables at time t e.g., Position

More information

Hidden Markov Models. Aarti Singh Slides courtesy: Eric Xing. Machine Learning / Nov 8, 2010

Hidden Markov Models. Aarti Singh Slides courtesy: Eric Xing. Machine Learning / Nov 8, 2010 Hidden Markov Models Aarti Singh Slides courtesy: Eric Xing Machine Learning 10-701/15-781 Nov 8, 2010 i.i.d to sequential data So far we assumed independent, identically distributed data Sequential data

More information

Introduction to Machine Learning CMU-10701

Introduction to Machine Learning CMU-10701 Introduction to Machine Learning CMU-10701 Hidden Markov Models Barnabás Póczos & Aarti Singh Slides courtesy: Eric Xing i.i.d to sequential data So far we assumed independent, identically distributed

More information

Hidden Markov models 1

Hidden Markov models 1 Hidden Markov models 1 Outline Time and uncertainty Markov process Hidden Markov models Inference: filtering, prediction, smoothing Most likely explanation: Viterbi 2 Time and uncertainty The world changes;

More information

Advanced Data Science

Advanced Data Science Advanced Data Science Dr. Kira Radinsky Slides Adapted from Tom M. Mitchell Agenda Topics Covered: Time series data Markov Models Hidden Markov Models Dynamic Bayes Nets Additional Reading: Bishop: Chapter

More information

CISC 889 Bioinformatics (Spring 2004) Hidden Markov Models (II)

CISC 889 Bioinformatics (Spring 2004) Hidden Markov Models (II) CISC 889 Bioinformatics (Spring 24) Hidden Markov Models (II) a. Likelihood: forward algorithm b. Decoding: Viterbi algorithm c. Model building: Baum-Welch algorithm Viterbi training Hidden Markov models

More information

STA 4273H: Statistical Machine Learning

STA 4273H: Statistical Machine Learning STA 4273H: Statistical Machine Learning Russ Salakhutdinov Department of Statistics! rsalakhu@utstat.toronto.edu! http://www.utstat.utoronto.ca/~rsalakhu/ Sidney Smith Hall, Room 6002 Lecture 11 Project

More information

Lecture 4: Hidden Markov Models: An Introduction to Dynamic Decision Making. November 11, 2010

Lecture 4: Hidden Markov Models: An Introduction to Dynamic Decision Making. November 11, 2010 Hidden Lecture 4: Hidden : An Introduction to Dynamic Decision Making November 11, 2010 Special Meeting 1/26 Markov Model Hidden When a dynamical system is probabilistic it may be determined by the transition

More information

CS532, Winter 2010 Hidden Markov Models

CS532, Winter 2010 Hidden Markov Models CS532, Winter 2010 Hidden Markov Models Dr. Alan Fern, afern@eecs.oregonstate.edu March 8, 2010 1 Hidden Markov Models The world is dynamic and evolves over time. An intelligent agent in such a world needs

More information

Hidden Markov Models The three basic HMM problems (note: change in notation) Mitch Marcus CSE 391

Hidden Markov Models The three basic HMM problems (note: change in notation) Mitch Marcus CSE 391 Hidden Markov Models The three basic HMM problems (note: change in notation) Mitch Marcus CSE 391 Parameters of an HMM States: A set of states S=s 1, s n Transition probabilities: A= a 1,1, a 1,2,, a n,n

More information

CS325 Artificial Intelligence Ch. 15,20 Hidden Markov Models and Particle Filtering

CS325 Artificial Intelligence Ch. 15,20 Hidden Markov Models and Particle Filtering CS325 Artificial Intelligence Ch. 15,20 Hidden Markov Models and Particle Filtering Cengiz Günay, Emory Univ. Günay Ch. 15,20 Hidden Markov Models and Particle FilteringSpring 2013 1 / 21 Get Rich Fast!

More information

CS711008Z Algorithm Design and Analysis

CS711008Z Algorithm Design and Analysis .. Lecture 6. Hidden Markov model and Viterbi s decoding algorithm Institute of Computing Technology Chinese Academy of Sciences, Beijing, China . Outline The occasionally dishonest casino: an example

More information

Lecture 9. Intro to Hidden Markov Models (finish up)

Lecture 9. Intro to Hidden Markov Models (finish up) Lecture 9 Intro to Hidden Markov Models (finish up) Review Structure Number of states Q 1.. Q N M output symbols Parameters: Transition probability matrix a ij Emission probabilities b i (a), which is

More information

Hidden Markov Models. Vibhav Gogate The University of Texas at Dallas

Hidden Markov Models. Vibhav Gogate The University of Texas at Dallas Hidden Markov Models Vibhav Gogate The University of Texas at Dallas Intro to AI (CS 4365) Many slides over the course adapted from either Dan Klein, Luke Zettlemoyer, Stuart Russell or Andrew Moore 1

More information

Introduction to Artificial Intelligence (AI)

Introduction to Artificial Intelligence (AI) Introduction to Artificial Intelligence (AI) Computer Science cpsc502, Lecture 10 Oct, 13, 2011 CPSC 502, Lecture 10 Slide 1 Today Oct 13 Inference in HMMs More on Robot Localization CPSC 502, Lecture

More information

CS 188: Artificial Intelligence Fall 2011

CS 188: Artificial Intelligence Fall 2011 CS 188: Artificial Intelligence Fall 2011 Lecture 20: HMMs / Speech / ML 11/8/2011 Dan Klein UC Berkeley Today HMMs Demo bonanza! Most likely explanation queries Speech recognition A massive HMM! Details

More information

CSE 473: Artificial Intelligence

CSE 473: Artificial Intelligence CSE 473: Artificial Intelligence Hidden Markov Models Dieter Fox --- University of Washington [Most slides were created by Dan Klein and Pieter Abbeel for CS188 Intro to AI at UC Berkeley. All CS188 materials

More information

STA 414/2104: Machine Learning

STA 414/2104: Machine Learning STA 414/2104: Machine Learning Russ Salakhutdinov Department of Computer Science! Department of Statistics! rsalakhu@cs.toronto.edu! http://www.cs.toronto.edu/~rsalakhu/ Lecture 9 Sequential Data So far

More information

Linear Dynamical Systems

Linear Dynamical Systems Linear Dynamical Systems Sargur N. srihari@cedar.buffalo.edu Machine Learning Course: http://www.cedar.buffalo.edu/~srihari/cse574/index.html Two Models Described by Same Graph Latent variables Observations

More information

Linear Dynamical Systems (Kalman filter)

Linear Dynamical Systems (Kalman filter) Linear Dynamical Systems (Kalman filter) (a) Overview of HMMs (b) From HMMs to Linear Dynamical Systems (LDS) 1 Markov Chains with Discrete Random Variables x 1 x 2 x 3 x T Let s assume we have discrete

More information

PROBABILISTIC REASONING OVER TIME

PROBABILISTIC REASONING OVER TIME PROBABILISTIC REASONING OVER TIME In which we try to interpret the present, understand the past, and perhaps predict the future, even when very little is crystal clear. Outline Time and uncertainty Inference:

More information

Example: The Dishonest Casino. Hidden Markov Models. Question # 1 Evaluation. The dishonest casino model. Question # 3 Learning. Question # 2 Decoding

Example: The Dishonest Casino. Hidden Markov Models. Question # 1 Evaluation. The dishonest casino model. Question # 3 Learning. Question # 2 Decoding Example: The Dishonest Casino Hidden Markov Models Durbin and Eddy, chapter 3 Game:. You bet $. You roll 3. Casino player rolls 4. Highest number wins $ The casino has two dice: Fair die P() = P() = P(3)

More information

Machine Learning for OR & FE

Machine Learning for OR & FE Machine Learning for OR & FE Hidden Markov Models Martin Haugh Department of Industrial Engineering and Operations Research Columbia University Email: martin.b.haugh@gmail.com Additional References: David

More information

Human-Oriented Robotics. Temporal Reasoning. Kai Arras Social Robotics Lab, University of Freiburg

Human-Oriented Robotics. Temporal Reasoning. Kai Arras Social Robotics Lab, University of Freiburg Temporal Reasoning Kai Arras, University of Freiburg 1 Temporal Reasoning Contents Introduction Temporal Reasoning Hidden Markov Models Linear Dynamical Systems (LDS) Kalman Filter 2 Temporal Reasoning

More information

COMS 4771 Probabilistic Reasoning via Graphical Models. Nakul Verma

COMS 4771 Probabilistic Reasoning via Graphical Models. Nakul Verma COMS 4771 Probabilistic Reasoning via Graphical Models Nakul Verma Last time Dimensionality Reduction Linear vs non-linear Dimensionality Reduction Principal Component Analysis (PCA) Non-linear methods

More information

Markov Chains and Hidden Markov Models

Markov Chains and Hidden Markov Models Markov Chains and Hidden Markov Models CE417: Introduction to Artificial Intelligence Sharif University of Technology Spring 2018 Soleymani Slides are based on Klein and Abdeel, CS188, UC Berkeley. Reasoning

More information

2D Image Processing. Bayes filter implementation: Kalman filter

2D Image Processing. Bayes filter implementation: Kalman filter 2D Image Processing Bayes filter implementation: Kalman filter Prof. Didier Stricker Kaiserlautern University http://ags.cs.uni-kl.de/ DFKI Deutsches Forschungszentrum für Künstliche Intelligenz http://av.dfki.de

More information

Hidden Markov Models. George Konidaris

Hidden Markov Models. George Konidaris Hidden Markov Models George Konidaris gdk@cs.brown.edu Fall 2018 Recall: Bayesian Network Flu Allergy Sinus Nose Headache Recall: BN Flu Allergy Flu P True 0.6 False 0.4 Sinus Allergy P True 0.2 False

More information

Hidden Markov Models (recap BNs)

Hidden Markov Models (recap BNs) Probabilistic reasoning over time - Hidden Markov Models (recap BNs) Applied artificial intelligence (EDA132) Lecture 10 2016-02-17 Elin A. Topp Material based on course book, chapter 15 1 A robot s view

More information

Hidden Markov Models Hamid R. Rabiee

Hidden Markov Models Hamid R. Rabiee Hidden Markov Models Hamid R. Rabiee 1 Hidden Markov Models (HMMs) In the previous slides, we have seen that in many cases the underlying behavior of nature could be modeled as a Markov process. However

More information

CSEP 573: Artificial Intelligence

CSEP 573: Artificial Intelligence CSEP 573: Artificial Intelligence Hidden Markov Models Luke Zettlemoyer Many slides over the course adapted from either Dan Klein, Stuart Russell, Andrew Moore, Ali Farhadi, or Dan Weld 1 Outline Probabilistic

More information

CS 343: Artificial Intelligence

CS 343: Artificial Intelligence CS 343: Artificial Intelligence Hidden Markov Models Prof. Scott Niekum The University of Texas at Austin [These slides based on those of Dan Klein and Pieter Abbeel for CS188 Intro to AI at UC Berkeley.

More information

Announcements. CS 188: Artificial Intelligence Fall Markov Models. Example: Markov Chain. Mini-Forward Algorithm. Example

Announcements. CS 188: Artificial Intelligence Fall Markov Models. Example: Markov Chain. Mini-Forward Algorithm. Example CS 88: Artificial Intelligence Fall 29 Lecture 9: Hidden Markov Models /3/29 Announcements Written 3 is up! Due on /2 (i.e. under two weeks) Project 4 up very soon! Due on /9 (i.e. a little over two weeks)

More information

Hidden Markov Models. x 1 x 2 x 3 x K

Hidden Markov Models. x 1 x 2 x 3 x K Hidden Markov Models 1 1 1 1 2 2 2 2 K K K K x 1 x 2 x 3 x K HiSeq X & NextSeq Viterbi, Forward, Backward VITERBI FORWARD BACKWARD Initialization: V 0 (0) = 1 V k (0) = 0, for all k > 0 Initialization:

More information

CS 188: Artificial Intelligence Spring 2009

CS 188: Artificial Intelligence Spring 2009 CS 188: Artificial Intelligence Spring 2009 Lecture 21: Hidden Markov Models 4/7/2009 John DeNero UC Berkeley Slides adapted from Dan Klein Announcements Written 3 deadline extended! Posted last Friday

More information

What s an HMM? Extraction with Finite State Machines e.g. Hidden Markov Models (HMMs) Hidden Markov Models (HMMs) for Information Extraction

What s an HMM? Extraction with Finite State Machines e.g. Hidden Markov Models (HMMs) Hidden Markov Models (HMMs) for Information Extraction Hidden Markov Models (HMMs) for Information Extraction Daniel S. Weld CSE 454 Extraction with Finite State Machines e.g. Hidden Markov Models (HMMs) standard sequence model in genomics, speech, NLP, What

More information

Supervised Learning Hidden Markov Models. Some of these slides were inspired by the tutorials of Andrew Moore

Supervised Learning Hidden Markov Models. Some of these slides were inspired by the tutorials of Andrew Moore Supervised Learning Hidden Markov Models Some of these slides were inspired by the tutorials of Andrew Moore A Markov System S 2 Has N states, called s 1, s 2.. s N There are discrete timesteps, t=0, t=1,.

More information

HMM : Viterbi algorithm - a toy example

HMM : Viterbi algorithm - a toy example MM : Viterbi algorithm - a toy example 0.5 0.5 0.5 A 0.2 A 0.3 0.5 0.6 C 0.3 C 0.2 G 0.3 0.4 G 0.2 T 0.2 T 0.3 et's consider the following simple MM. This model is composed of 2 states, (high GC content)

More information

CS 5522: Artificial Intelligence II

CS 5522: Artificial Intelligence II CS 5522: Artificial Intelligence II Hidden Markov Models Instructor: Alan Ritter Ohio State University [These slides were adapted from CS188 Intro to AI at UC Berkeley. All materials available at http://ai.berkeley.edu.]

More information

CS 5522: Artificial Intelligence II

CS 5522: Artificial Intelligence II CS 5522: Artificial Intelligence II Hidden Markov Models Instructor: Wei Xu Ohio State University [These slides were adapted from CS188 Intro to AI at UC Berkeley.] Pacman Sonar (P4) [Demo: Pacman Sonar

More information

Hidden Markov Models

Hidden Markov Models Hidden Markov Models Slides mostly from Mitch Marcus and Eric Fosler (with lots of modifications). Have you seen HMMs? Have you seen Kalman filters? Have you seen dynamic programming? HMMs are dynamic

More information

Hidden Markov Models. based on chapters from the book Durbin, Eddy, Krogh and Mitchison Biological Sequence Analysis via Shamir s lecture notes

Hidden Markov Models. based on chapters from the book Durbin, Eddy, Krogh and Mitchison Biological Sequence Analysis via Shamir s lecture notes Hidden Markov Models based on chapters from the book Durbin, Eddy, Krogh and Mitchison Biological Sequence Analysis via Shamir s lecture notes music recognition deal with variations in - actual sound -

More information

Hidden Markov Models. x 1 x 2 x 3 x K

Hidden Markov Models. x 1 x 2 x 3 x K Hidden Markov Models 1 1 1 1 2 2 2 2 K K K K x 1 x 2 x 3 x K Viterbi, Forward, Backward VITERBI FORWARD BACKWARD Initialization: V 0 (0) = 1 V k (0) = 0, for all k > 0 Initialization: f 0 (0) = 1 f k (0)

More information

Approximate Inference

Approximate Inference Approximate Inference Simulation has a name: sampling Sampling is a hot topic in machine learning, and it s really simple Basic idea: Draw N samples from a sampling distribution S Compute an approximate

More information

2D Image Processing. Bayes filter implementation: Kalman filter

2D Image Processing. Bayes filter implementation: Kalman filter 2D Image Processing Bayes filter implementation: Kalman filter Prof. Didier Stricker Dr. Gabriele Bleser Kaiserlautern University http://ags.cs.uni-kl.de/ DFKI Deutsches Forschungszentrum für Künstliche

More information

CSE 473: Artificial Intelligence Probability Review à Markov Models. Outline

CSE 473: Artificial Intelligence Probability Review à Markov Models. Outline CSE 473: Artificial Intelligence Probability Review à Markov Models Daniel Weld University of Washington [These slides were created by Dan Klein and Pieter Abbeel for CS188 Intro to AI at UC Berkeley.

More information

COMP90051 Statistical Machine Learning

COMP90051 Statistical Machine Learning COMP90051 Statistical Machine Learning Semester 2, 2017 Lecturer: Trevor Cohn 24. Hidden Markov Models & message passing Looking back Representation of joint distributions Conditional/marginal independence

More information

We Live in Exciting Times. CSCI-567: Machine Learning (Spring 2019) Outline. Outline. ACM (an international computing research society) has named

We Live in Exciting Times. CSCI-567: Machine Learning (Spring 2019) Outline. Outline. ACM (an international computing research society) has named We Live in Exciting Times ACM (an international computing research society) has named CSCI-567: Machine Learning (Spring 2019) Prof. Victor Adamchik U of Southern California Apr. 2, 2019 Yoshua Bengio,

More information

CS 188: Artificial Intelligence Spring Announcements

CS 188: Artificial Intelligence Spring Announcements CS 188: Artificial Intelligence Spring 2011 Lecture 18: HMMs and Particle Filtering 4/4/2011 Pieter Abbeel --- UC Berkeley Many slides over this course adapted from Dan Klein, Stuart Russell, Andrew Moore

More information

STATS 306B: Unsupervised Learning Spring Lecture 5 April 14

STATS 306B: Unsupervised Learning Spring Lecture 5 April 14 STATS 306B: Unsupervised Learning Spring 2014 Lecture 5 April 14 Lecturer: Lester Mackey Scribe: Brian Do and Robin Jia 5.1 Discrete Hidden Markov Models 5.1.1 Recap In the last lecture, we introduced

More information

Note Set 5: Hidden Markov Models

Note Set 5: Hidden Markov Models Note Set 5: Hidden Markov Models Probabilistic Learning: Theory and Algorithms, CS 274A, Winter 2016 1 Hidden Markov Models (HMMs) 1.1 Introduction Consider observed data vectors x t that are d-dimensional

More information

CS 343: Artificial Intelligence

CS 343: Artificial Intelligence CS 343: Artificial Intelligence Particle Filters and Applications of HMMs Prof. Scott Niekum The University of Texas at Austin [These slides based on those of Dan Klein and Pieter Abbeel for CS188 Intro

More information

Lecture 11: Hidden Markov Models

Lecture 11: Hidden Markov Models Lecture 11: Hidden Markov Models Cognitive Systems - Machine Learning Cognitive Systems, Applied Computer Science, Bamberg University slides by Dr. Philip Jackson Centre for Vision, Speech & Signal Processing

More information

Hidden Markov Models

Hidden Markov Models Hidden Markov Models CI/CI(CS) UE, SS 2015 Christian Knoll Signal Processing and Speech Communication Laboratory Graz University of Technology June 23, 2015 CI/CI(CS) SS 2015 June 23, 2015 Slide 1/26 Content

More information

Kalman filtering and friends: Inference in time series models. Herke van Hoof slides mostly by Michael Rubinstein

Kalman filtering and friends: Inference in time series models. Herke van Hoof slides mostly by Michael Rubinstein Kalman filtering and friends: Inference in time series models Herke van Hoof slides mostly by Michael Rubinstein Problem overview Goal Estimate most probable state at time k using measurement up to time

More information

Machine Learning & Data Mining Caltech CS/CNS/EE 155 Hidden Markov Models Last Updated: Feb 7th, 2017

Machine Learning & Data Mining Caltech CS/CNS/EE 155 Hidden Markov Models Last Updated: Feb 7th, 2017 1 Introduction Let x = (x 1,..., x M ) denote a sequence (e.g. a sequence of words), and let y = (y 1,..., y M ) denote a corresponding hidden sequence that we believe explains or influences x somehow

More information

Reasoning Under Uncertainty: Bayesian networks intro

Reasoning Under Uncertainty: Bayesian networks intro Reasoning Under Uncertainty: Bayesian networks intro Alan Mackworth UBC CS 322 Uncertainty 4 March 18, 2013 Textbook 6.3, 6.3.1, 6.5, 6.5.1, 6.5.2 Lecture Overview Recap: marginal and conditional independence

More information

Dynamic Approaches: The Hidden Markov Model

Dynamic Approaches: The Hidden Markov Model Dynamic Approaches: The Hidden Markov Model Davide Bacciu Dipartimento di Informatica Università di Pisa bacciu@di.unipi.it Machine Learning: Neural Networks and Advanced Models (AA2) Inference as Message

More information

Hidden Markov Model. Ying Wu. Electrical Engineering and Computer Science Northwestern University Evanston, IL 60208

Hidden Markov Model. Ying Wu. Electrical Engineering and Computer Science Northwestern University Evanston, IL 60208 Hidden Markov Model Ying Wu Electrical Engineering and Computer Science Northwestern University Evanston, IL 60208 http://www.eecs.northwestern.edu/~yingwu 1/19 Outline Example: Hidden Coin Tossing Hidden

More information

Parametric Models Part III: Hidden Markov Models

Parametric Models Part III: Hidden Markov Models Parametric Models Part III: Hidden Markov Models Selim Aksoy Department of Computer Engineering Bilkent University saksoy@cs.bilkent.edu.tr CS 551, Spring 2014 CS 551, Spring 2014 c 2014, Selim Aksoy (Bilkent

More information

Probability and Time: Hidden Markov Models (HMMs)

Probability and Time: Hidden Markov Models (HMMs) Probability and Time: Hidden Markov Models (HMMs) Computer Science cpsc322, Lecture 32 (Textbook Chpt 6.5.2) Nov, 25, 2013 CPSC 322, Lecture 32 Slide 1 Lecture Overview Recap Markov Models Markov Chain

More information

Why do we care? Measurements. Handling uncertainty over time: predicting, estimating, recognizing, learning. Dealing with time

Why do we care? Measurements. Handling uncertainty over time: predicting, estimating, recognizing, learning. Dealing with time Handling uncertainty over time: predicting, estimating, recognizing, learning Chris Atkeson 2004 Why do we care? Speech recognition makes use of dependence of words and phonemes across time. Knowing where

More information

Bayesian Networks: Construction, Inference, Learning and Causal Interpretation. Volker Tresp Summer 2016

Bayesian Networks: Construction, Inference, Learning and Causal Interpretation. Volker Tresp Summer 2016 Bayesian Networks: Construction, Inference, Learning and Causal Interpretation Volker Tresp Summer 2016 1 Introduction So far we were mostly concerned with supervised learning: we predicted one or several

More information

Our Status in CSE 5522

Our Status in CSE 5522 Our Status in CSE 5522 We re done with Part I Search and Planning! Part II: Probabilistic Reasoning Diagnosis Speech recognition Tracking objects Robot mapping Genetics Error correcting codes lots more!

More information

Outline. CSE 573: Artificial Intelligence Autumn Agent. Partial Observability. Markov Decision Process (MDP) 10/31/2012

Outline. CSE 573: Artificial Intelligence Autumn Agent. Partial Observability. Markov Decision Process (MDP) 10/31/2012 CSE 573: Artificial Intelligence Autumn 2012 Reasoning about Uncertainty & Hidden Markov Models Daniel Weld Many slides adapted from Dan Klein, Stuart Russell, Andrew Moore & Luke Zettlemoyer 1 Outline

More information

order is number of previous outputs

order is number of previous outputs Markov Models Lecture : Markov and Hidden Markov Models PSfrag Use past replacements as state. Next output depends on previous output(s): y t = f[y t, y t,...] order is number of previous outputs y t y

More information

State Space and Hidden Markov Models

State Space and Hidden Markov Models State Space and Hidden Markov Models Kunsch H.R. State Space and Hidden Markov Models. ETH- Zurich Zurich; Aliaksandr Hubin Oslo 2014 Contents 1. Introduction 2. Markov Chains 3. Hidden Markov and State

More information

Lecture 12: Algorithms for HMMs

Lecture 12: Algorithms for HMMs Lecture 12: Algorithms for HMMs Nathan Schneider (some slides from Sharon Goldwater; thanks to Jonathan May for bug fixes) ENLP 17 October 2016 updated 9 September 2017 Recap: tagging POS tagging is a

More information

CS 188: Artificial Intelligence. Our Status in CS188

CS 188: Artificial Intelligence. Our Status in CS188 CS 188: Artificial Intelligence Probability Pieter Abbeel UC Berkeley Many slides adapted from Dan Klein. 1 Our Status in CS188 We re done with Part I Search and Planning! Part II: Probabilistic Reasoning

More information

Probabilistic Robotics

Probabilistic Robotics University of Rome La Sapienza Master in Artificial Intelligence and Robotics Probabilistic Robotics Prof. Giorgio Grisetti Course web site: http://www.dis.uniroma1.it/~grisetti/teaching/probabilistic_ro

More information

Lecture 12: Algorithms for HMMs

Lecture 12: Algorithms for HMMs Lecture 12: Algorithms for HMMs Nathan Schneider (some slides from Sharon Goldwater; thanks to Jonathan May for bug fixes) ENLP 26 February 2018 Recap: tagging POS tagging is a sequence labelling task.

More information

CS 7180: Behavioral Modeling and Decision- making in AI

CS 7180: Behavioral Modeling and Decision- making in AI CS 7180: Behavioral Modeling and Decision- making in AI Learning Probabilistic Graphical Models Prof. Amy Sliva October 31, 2012 Hidden Markov model Stochastic system represented by three matrices N =

More information

Intelligent Systems (AI-2)

Intelligent Systems (AI-2) Intelligent Systems (AI-2) Computer Science cpsc422, Lecture 19 Oct, 24, 2016 Slide Sources Raymond J. Mooney University of Texas at Austin D. Koller, Stanford CS - Probabilistic Graphical Models D. Page,

More information

CS188 Outline. We re done with Part I: Search and Planning! Part II: Probabilistic Reasoning. Part III: Machine Learning

CS188 Outline. We re done with Part I: Search and Planning! Part II: Probabilistic Reasoning. Part III: Machine Learning CS188 Outline We re done with Part I: Search and Planning! Part II: Probabilistic Reasoning Diagnosis Speech recognition Tracking objects Robot mapping Genetics Error correcting codes lots more! Part III:

More information

CS 343: Artificial Intelligence

CS 343: Artificial Intelligence CS 343: Artificial Intelligence Particle Filters and Applications of HMMs Prof. Scott Niekum The University of Texas at Austin [These slides based on those of Dan Klein and Pieter Abbeel for CS188 Intro

More information

2 : Directed GMs: Bayesian Networks

2 : Directed GMs: Bayesian Networks 10-708: Probabilistic Graphical Models 10-708, Spring 2017 2 : Directed GMs: Bayesian Networks Lecturer: Eric P. Xing Scribes: Jayanth Koushik, Hiroaki Hayashi, Christian Perez Topic: Directed GMs 1 Types

More information

Lecture 4: State Estimation in Hidden Markov Models (cont.)

Lecture 4: State Estimation in Hidden Markov Models (cont.) EE378A Statistical Signal Processing Lecture 4-04/13/2017 Lecture 4: State Estimation in Hidden Markov Models (cont.) Lecturer: Tsachy Weissman Scribe: David Wugofski In this lecture we build on previous

More information

HMM : Viterbi algorithm - a toy example

HMM : Viterbi algorithm - a toy example MM : Viterbi algorithm - a toy example 0.6 et's consider the following simple MM. This model is composed of 2 states, (high GC content) and (low GC content). We can for example consider that state characterizes

More information

CSE 473: Artificial Intelligence

CSE 473: Artificial Intelligence CSE 473: Artificial Intelligence Probability Steve Tanimoto University of Washington [These slides were created by Dan Klein and Pieter Abbeel for CS188 Intro to AI at UC Berkeley. All CS188 materials

More information

Bayesian networks Lecture 18. David Sontag New York University

Bayesian networks Lecture 18. David Sontag New York University Bayesian networks Lecture 18 David Sontag New York University Outline for today Modeling sequen&al data (e.g., =me series, speech processing) using hidden Markov models (HMMs) Bayesian networks Independence

More information

Hidden Markov Models (I)

Hidden Markov Models (I) GLOBEX Bioinformatics (Summer 2015) Hidden Markov Models (I) a. The model b. The decoding: Viterbi algorithm Hidden Markov models A Markov chain of states At each state, there are a set of possible observables

More information

Basic math for biology

Basic math for biology Basic math for biology Lei Li Florida State University, Feb 6, 2002 The EM algorithm: setup Parametric models: {P θ }. Data: full data (Y, X); partial data Y. Missing data: X. Likelihood and maximum likelihood

More information

Hidden Markov Models. x 1 x 2 x 3 x N

Hidden Markov Models. x 1 x 2 x 3 x N Hidden Markov Models 1 1 1 1 K K K K x 1 x x 3 x N Example: The dishonest casino A casino has two dice: Fair die P(1) = P() = P(3) = P(4) = P(5) = P(6) = 1/6 Loaded die P(1) = P() = P(3) = P(4) = P(5)

More information

Probabilistic Graphical Models Homework 2: Due February 24, 2014 at 4 pm

Probabilistic Graphical Models Homework 2: Due February 24, 2014 at 4 pm Probabilistic Graphical Models 10-708 Homework 2: Due February 24, 2014 at 4 pm Directions. This homework assignment covers the material presented in Lectures 4-8. You must complete all four problems to

More information

HIDDEN MARKOV MODELS IN SPEECH RECOGNITION

HIDDEN MARKOV MODELS IN SPEECH RECOGNITION HIDDEN MARKOV MODELS IN SPEECH RECOGNITION Wayne Ward Carnegie Mellon University Pittsburgh, PA 1 Acknowledgements Much of this talk is derived from the paper "An Introduction to Hidden Markov Models",

More information

Bayesian Networks: Construction, Inference, Learning and Causal Interpretation. Volker Tresp Summer 2014

Bayesian Networks: Construction, Inference, Learning and Causal Interpretation. Volker Tresp Summer 2014 Bayesian Networks: Construction, Inference, Learning and Causal Interpretation Volker Tresp Summer 2014 1 Introduction So far we were mostly concerned with supervised learning: we predicted one or several

More information

Machine Learning for natural language processing

Machine Learning for natural language processing Machine Learning for natural language processing Hidden Markov Models Laura Kallmeyer Heinrich-Heine-Universität Düsseldorf Summer 2016 1 / 33 Introduction So far, we have classified texts/observations

More information

Introduction to Mobile Robotics Probabilistic Robotics

Introduction to Mobile Robotics Probabilistic Robotics Introduction to Mobile Robotics Probabilistic Robotics Wolfram Burgard 1 Probabilistic Robotics Key idea: Explicit representation of uncertainty (using the calculus of probability theory) Perception Action

More information

Intelligent Systems (AI-2)

Intelligent Systems (AI-2) Intelligent Systems (AI-2) Computer Science cpsc422, Lecture 19 Oct, 23, 2015 Slide Sources Raymond J. Mooney University of Texas at Austin D. Koller, Stanford CS - Probabilistic Graphical Models D. Page,

More information

MACHINE LEARNING 2 UGM,HMMS Lecture 7

MACHINE LEARNING 2 UGM,HMMS Lecture 7 LOREM I P S U M Royal Institute of Technology MACHINE LEARNING 2 UGM,HMMS Lecture 7 THIS LECTURE DGM semantics UGM De-noising HMMs Applications (interesting probabilities) DP for generation probability

More information

Temporal probability models. Chapter 15, Sections 1 5 1

Temporal probability models. Chapter 15, Sections 1 5 1 Temporal probability models Chapter 15, Sections 1 5 Chapter 15, Sections 1 5 1 Outline Time and uncertainty Inference: filtering, prediction, smoothing Hidden Markov models Kalman filters (a brief mention)

More information

Data-Intensive Computing with MapReduce

Data-Intensive Computing with MapReduce Data-Intensive Computing with MapReduce Session 8: Sequence Labeling Jimmy Lin University of Maryland Thursday, March 14, 2013 This work is licensed under a Creative Commons Attribution-Noncommercial-Share

More information

Hidden Markov Models Part 2: Algorithms

Hidden Markov Models Part 2: Algorithms Hidden Markov Models Part 2: Algorithms CSE 6363 Machine Learning Vassilis Athitsos Computer Science and Engineering Department University of Texas at Arlington 1 Hidden Markov Model An HMM consists of:

More information

Lecture 3: ASR: HMMs, Forward, Viterbi

Lecture 3: ASR: HMMs, Forward, Viterbi Original slides by Dan Jurafsky CS 224S / LINGUIST 285 Spoken Language Processing Andrew Maas Stanford University Spring 2017 Lecture 3: ASR: HMMs, Forward, Viterbi Fun informative read on phonetics The

More information

8: Hidden Markov Models

8: Hidden Markov Models 8: Hidden Markov Models Machine Learning and Real-world Data Helen Yannakoudakis 1 Computer Laboratory University of Cambridge Lent 2018 1 Based on slides created by Simone Teufel So far we ve looked at

More information

CS 5522: Artificial Intelligence II

CS 5522: Artificial Intelligence II CS 5522: Artificial Intelligence II Particle Filters and Applications of HMMs Instructor: Alan Ritter Ohio State University [These slides were adapted from CS188 Intro to AI at UC Berkeley. All materials

More information

Statistical Methods for NLP

Statistical Methods for NLP Statistical Methods for NLP Sequence Models Joakim Nivre Uppsala University Department of Linguistics and Philology joakim.nivre@lingfil.uu.se Statistical Methods for NLP 1(21) Introduction Structured

More information

Recap: HMM. ANLP Lecture 9: Algorithms for HMMs. More general notation. Recap: HMM. Elements of HMM: Sharon Goldwater 4 Oct 2018.

Recap: HMM. ANLP Lecture 9: Algorithms for HMMs. More general notation. Recap: HMM. Elements of HMM: Sharon Goldwater 4 Oct 2018. Recap: HMM ANLP Lecture 9: Algorithms for HMMs Sharon Goldwater 4 Oct 2018 Elements of HMM: Set of states (tags) Output alphabet (word types) Start state (beginning of sentence) State transition probabilities

More information

CS 5522: Artificial Intelligence II

CS 5522: Artificial Intelligence II CS 5522: Artificial Intelligence II Particle Filters and Applications of HMMs Instructor: Wei Xu Ohio State University [These slides were adapted from CS188 Intro to AI at UC Berkeley.] Recap: Reasoning

More information