ADAPTIVE EXPERIMENTAL DESIGNS. Maciej Patan and Barbara Bogacka. University of Zielona Góra, Poland and Queen Mary, University of London
|
|
- Jonas Stokes
- 5 years ago
- Views:
Transcription
1 ADAPTIVE EXPERIMENTAL DESIGNS FOR SIMULTANEOUS PK AND DOSE-SELECTION STUDIES IN PHASE I CLINICAL TRIALS Maciej Patan and Barbara Bogacka University of Zielona Góra, Poland and Queen Mary, University of London
2 Introduction Clinical Trials Adaptive Designs Phase I Study Dose-Response Model PK Model Optimality Criteria Ethical Approach Efficiency of PK Estimation Optimization Problems Examples Approach First order kinetics Second order kinetics Conclusions Further Work
3 Introduction Clinical Trials Clinical trials are experiments on humans (or living animals) to explore a proposed treatment for a disease and to obtain a licence for the commercial use of the treatment on non-experimental patients. Phases of Clinical Trials: Phase I - first in human, small studies to understand PK parameters and to find a for further exploration in Phase II. Phase II - larger studies on patients to examine the evidence of a drug effect, compared to placebo. Phase III - very large studies on patients to further refine the selection. Phase IV - postmarketing clinical development.
4 Introduction Adaptive Designs The goal of adaptive designs is to learn from the accumulating data and to apply what is learnt as quickly as possible. In such trials changes are made by design and not on an ad hoc basis; therefore adaptation is a design feature aimed to enhance the trial, not as a remedy for inadequate planning. Gallo et al. (26) Main features of adaptive designs: The information is gathered sequentially. After each step of the trial the statistical model is updated. Next step of the trial depends on all the results up to date. The trial is stopped when the goal of the experiment is achieved (or the resources run out).
5 Introduction Phase I Study To establish PK parameters. To find a safe for further studies. concentration Efficacy Toxicity.4.2 c. t t max t time Dose
6 Introduction Phase I Study It is usually assumed that both efficacy and toxicity increase with. Then the Maximum Tolerated Dose is used for further studies in Phase II. Some Medicinal Products do not follow this pattern. For example, when the new treatment stimulates the immune system: large may decrease efficacy, -efficacy relationship may be unimodal.
7 Dose-Response Model After Zhang et al. (26) we consider three possible responses to a given : y - no efficacy and no severe toxicity ( neutral ), y - efficacy and no severe toxicity ( success ), y 2 - severe toxicity ( disaster ). We assign probabilities ψ i (x, ϑ ) to each of the responses, at a given x, such that ψ (x, ϑ ) - decreases with, ψ (x, ϑ ) - decreases or is unimodal or increases with, ψ 2 (x, ϑ ) - increases with and ψ (x, ϑ ) + ψ (x, ϑ ) + ψ 2 (x, ϑ ) =
8 Dose-Response Model The Continuation Ratio (CR) model assures such behaviour of the probabilities (Fan and Chaloner (24)) { } ψ (x; ϑ ) log = α + β x ψ (x; ϑ ) { } ψ2 (x; ϑ ) log = α 2 + β 2 x ψ 2 (x; ϑ ) where ϑ = (α, β, α 2, β 2 ) is a set of unknown parameters to be estimated.
9 Dose-Response Model Solving these two equations we obtain three nonlinear functions: ψ 2 (x; ϑ ) = exp(α 2 + β 2 x) + exp(α 2 + β 2 x) exp(α + β x) ψ (x; ϑ ) = [ + exp(α + β x)][ + exp(α 2 + β 2 x)] ψ (x; ϑ ) = [ + exp(α + β x)][ + exp(α 2 + β 2 x)]. Psi Psi Psi 2 Psi Psi Psi 2.8 Psi Psi Psi Dose Dose Dose
10 Dose-Response Model The approach we take here is more relevant when patients rather than healthy volunteers take part in the experiment. Questions: What should be recommended for further studies? What strategy to take to apply efficacious s as often as possible and get good estimates of the -response model parameters? How to incorporate the PK information obtained in the study?
11 PK Model Two compartments PK mechanistic model: d[b] dt = k a [A] λ k e [B] λ 2 d[a] dt = k a [A] λ + g(t x) with the initial concentrations [A] = and [B] =. ϑ 2 = (k a, k e ) is a vector of unknown rate of absorption and rate of elimination, respectively. (λ, λ 2 ) are known orders of the kinetic reaction. Time t is scaled in hours and g(t x) is the drug infusion rate: { cx t g(t x) = t > where c is some constant and x is a. We are interested in precise estimation of ϑ 2.
12 PK Model Question: What to apply and when to measure the concentration to optimally estimate the PK parameters?.5.5 concentration.5 concentration time time Design: { } t... t ξ(t x) = s w... w s
13 Optimality Criteria Biologically Optimum Dose Zhang et al. (26) propose the following decision functions for finding a BOD: δ (x; ϑ ) = I [ψ2 (x;ϑ )<π ], δ 2 (x; ϑ ) = ψ (x; ϑ ) λψ 2 (x; ϑ ), where I denotes an indicator function and λ [, ]. δ (x; ϑ ) = means that the toxicity at x is smaller than a pre-specified value π. x = arg max C(x) δ 2(x; ϑ ), C(x) = {x : δ (x; ϑ ) = } is the recommended BOD for next step of the trial.
14 Optimality Criteria Biologically Optimum Dose An example of a possible Adaptive Design: no reaction efficacy toxicity Response probability cohort.8.2.4
15 Optimality Criteria Biologically Optimum Dose At step k of the Adaptive Design: xk is applied to cohort k, responses are observed, parameters of the -response model estimated (Bayesian), x k is calculated, stopping rule is checked. Stopping rules: the last cohort of patients is treated, i.e., n = n max, the same x has been determined minimum m times,
16 Optimality Criteria Biologically Optimum Dose Some technicalities: the possible s were x = +.5i, i =,,..., 6, cohort size was q = 3 and maximum number of cohorts was n max = 5, the highest tolerable toxicity probability π was assumed to be.33 and λ =, it was allowed to skip only one during the escalation, no restrictions on de-escalations. uniform prior distributions for (α, β, α 2, β ) were taken over [ 3, 3], [, 4], [ 3, 7], [3, 9], respectively.
17 Optimality Criteria Efficiency of PK Estimation We use the D-optimality criterion for estimating PK parameters ϑ 2 = (k a, k e ): Φ{M(ξ)} = det M(ξ) where M(ξ) is the information matrix for θ 2 and efficiency of the estimation at a given x is defined as: E D (ξ (t x )) = p = 2, is the number of parameters. { det M(ξ (t x )) } /p max x det M(ξ (t x))
18 Approach BOD Constrained by Toxicity Level and by PK Efficiency Maximize (over x) δ 2 (x; ϑ ) = ψ (x; ϑ ) λψ 2 (x; ϑ ) subject to and ψ 2 (x; ϑ ) < π E D [ξ (t x)] η
19 Approach 2 PK Efficiency Constrained by Toxicity and Dose Efficacy Levels Maximize (over ξ) subject to and E D [ξ(t x )] ψ 2 (x ; ϑ ) < π δ 2 (x; ϑ ) max x δ 2 (x; ϑ ) ϱ where ϱ is the efficacy coefficient. Such a relative efficacy can be considered as an analogy to the efficiency coefficient E D.
20 Examples Approach : First Order Kinetics Probabilities of the responses y, y, y 2 and det M[ξ(t x)] at step k of the Adaptive Design for the parameter estimates ϑ and ϑ 2 obtained in step k : response probability π =.33 toxicity efficacy no reaction determinant
21 Examples Approach : First Order Kinetics D-optimum design for estimation of the kinetic parameters ϑ = (k a, k e ) does not depend on the : support coordinates weigths
22 Examples Approach : First Order Kinetics Examples of the trial runs for different levels of PK efficiency. (a) E D 4% (b)e D 8% (c)e D 9% BOD.2.2 BOD.2. BOD cohorts cohorts cohorts Dashed lines represent the adaptive bounds stemming from the E D constraint. The dot-dashed line represents the adaptive upper threshold for non-admissible toxicity.
23 Examples Approach : First Order Kinetics (a) E D 4% (b) E D 8% (c) E D 9% k e.3 k e.3 k e k a k a k a Final estimates of PK parameters from simulations - red square represents the values assumed for the simulations - green circle denotes the sample mean
24 Examples Approach : First Order Kinetics.8 (a) E D 4% (d) E D 8% (e) E D 9% efficacy efficacy efficacy efficiency efficiency efficiency.8.8 proportions of s.4 proportions of s.4 proportions of s Dose frequencies averaged over total number of cohorts in simulations. efficacy efficiency efficacy efficiency efficacy efficiency proportions of simulations proportions of simulations proportions of simulations Proportions of the final BOD frequencies in the simulations.
25 Examples Approach : Second Order Kinetics Probabilities of the responses y, y, y 2 and det M[ξ(t x)] at step k of the Adaptive Design for the parameter estimates ϑ and ϑ 2 obtained in step k :.8.7 toxicity efficacy no reaction.58 response probability π =.33 determinant Non-monotonous D-criterion as a function of restricts the optimum s to be in the middle of the range.
26 Examples Approach : Second Order Kinetics support coordinates weigths Design support points and weights for different s, for priors k a =.8 and k e =.3.
27 Examples Approach : Second Order Kinetics Examples of the trial runs for different levels of PK efficiency. (a) E D 75% (b)e D 9% (c) E D 98% BOD. BOD. BOD cohorts cohorts cohorts Dashed lines represent the adaptive bounds stemming from the E D constraint. The dot-dashed line represents the adaptive upper threshold for non-admissible toxicity.
28 Examples Approach : Second Order Kinetics (a) E D 75% (b) E D 9% (c) E D 98% k e.3 k e.3 k e k a k a k a Final estimates of PK parameters from simulations - red square represents the values assumed for the simulations - green circle denotes the sample mean
29 Examples Approach : Second Order Kinetics (a) E D 75% (b) E D 9% (c) E D 98% proportions of s.4 efficacy efficiency proportions of s.4 efficacy efficiency proportions of s.4 efficacy efficiency Dose frequencies averaged over total number of cohorts in simulations. proportions of simulations efficacy efficiency proportions of simulations efficacy efficiency proportions of simulations efficacy efficiency Proportions of the final BOD frequencies in the simulations.
30 Conclusions I Approach Incorporating the constraint on the efficiency of PK estimation into the optimization may seriously affect the selection design. Different orders of the kinetics will differently affect the selection design. A reasonable E D constraint may give high quality estimates of PK parameters as well as a good determined as BOD.
31 Conclusions II Approach 2 Here we maximize the efficiency of PK estimation with the constraint on the efficacy. The PK parameters are precisely estimated. The selected BODs are pooled towards the optimum region for PK estimation condition.
32 Conclusions III Both Approaches, and 2, are relevant when patients rather than healthy volunteers enter the trial. Patients are treated with possibly efficacious s. Some information on the response to BOD is already gathered in Phase I (prior for Phase II). Also: Approach : fewer potentially toxic s or non-efficacious s are applied, ensures good efficiency of estimation of the PK parameters, may be considered as a seamless phase I/II, leading to serious saving in resources, both financial and human. Approach 2: more relevant when toxicity is a minor issue, in case of first order kinetics, PK parameters are very precisely estimated.
33 Conclusions IV Defining appropriate criteria of optimality, suitable for the purpose of an experiment is paramount. Model-based simulation studies may be very useful for making decision about the criteria and foreseeing possible problems. Adding PK information, which is collected at Phase I anyway, may improve the optimization and lead to serious savings.
34 Further work to consider the kinetics order as unknown parameters, to include safety issues into stopping rules, to incorporate safety parameters into the optimization (time of injection, time between cohorts, toxicity probability) concentration.2.2 concentration time time The concentrations of A and B (solid lines) and their derivatives wrt reaction rates k a and k e
35 References Fan, S. and Chaloner, K. (24). Optimal desings and liminting optimal designs for a trinomial response, Journal of Statistical Planning and Inference 26: Gallo, P., Chuang-Stein, C., Dragalin, V., Gaydos, B., Krams, M. and Pinheiro, J. (26). Adaptive designs in clinical drug develoment - an executive summary of the phrma working group, Journal of Biopharmaceutical Statistics 6: Zhang, W., Sargent, D. and Mandrekar, S. (26). An adaptive -finding design incorporating both toxicity and efficacy, Statistics in Medicine 25:
On the efficiency of two-stage adaptive designs
On the efficiency of two-stage adaptive designs Björn Bornkamp (Novartis Pharma AG) Based on: Dette, H., Bornkamp, B. and Bretz F. (2010): On the efficiency of adaptive designs www.statistik.tu-dortmund.de/sfb823-dp2010.html
More informationPhase I design for locating schedule-specific maximum tolerated doses
Phase I design for locating schedule-specific maximum tolerated doses Nolan A. Wages, Ph.D. University of Virginia Division of Translational Research & Applied Statistics Department of Public Health Sciences
More informationA Bayesian decision-theoretic approach to incorporating pre-clinical information into phase I clinical trials
A Bayesian decision-theoretic approach to incorporating pre-clinical information into phase I clinical trials Haiyan Zheng, Lisa V. Hampson Medical and Pharmaceutical Statistics Research Unit Department
More informationBayesian decision procedures for dose escalation - a re-analysis
Bayesian decision procedures for dose escalation - a re-analysis Maria R Thomas Queen Mary,University of London February 9 th, 2010 Overview Phase I Dose Escalation Trial Terminology Regression Models
More informationUse of frequentist and Bayesian approaches for extrapolating from adult efficacy data to design and interpret confirmatory trials in children
Use of frequentist and Bayesian approaches for extrapolating from adult efficacy data to design and interpret confirmatory trials in children Lisa Hampson, Franz Koenig and Martin Posch Department of Mathematics
More informationBayesian concept for combined Phase 2a/b trials
Bayesian concept for combined Phase 2a/b trials /////////// Stefan Klein 07/12/2018 Agenda Phase 2a: PoC studies Phase 2b: dose finding studies Simulation Results / Discussion 2 /// Bayer /// Bayesian
More informationOn construction of constrained optimum designs
On construction of constrained optimum designs Institute of Control and Computation Engineering University of Zielona Góra, Poland DEMA2008, Cambridge, 15 August 2008 Numerical algorithms to construct
More informationOptimum Designs for the Equality of Parameters in Enzyme Inhibition Kinetic Models
Optimum Designs for the Equality of Parameters in Enzyme Inhibition Kinetic Models Anthony C. Atkinson, Department of Statistics, London School of Economics, London WC2A 2AE, UK and Barbara Bogacka, School
More informationRandomized dose-escalation design for drug combination cancer trials with immunotherapy
Randomized dose-escalation design for drug combination cancer trials with immunotherapy Pavel Mozgunov, Thomas Jaki, Xavier Paoletti Medical and Pharmaceutical Statistics Research Unit, Department of Mathematics
More informationHeteroscedastic T-Optimum Designs for Multiresponse Dynamic Models
Heteroscedastic T-Optimum Designs for Multiresponse Dynamic Models Dariusz Uciński 1 and Barbara Bogacka 2 1 Institute of Control and Computation Engineering, University of Zielona Góra, ul. Podgórna 50,
More informationCTP-656 Tablet Confirmed Superiority Of Pharmacokinetic Profile Relative To Kalydeco in Phase I Clinical Studies
Tablet Confirmed Superiority Of Pharmacokinetic Profile Relative To Kalydeco in Phase I Clinical Studies 39 th European Cystic Fibrosis Conference 8-11 June 2016, Basel, Switzerland 2014 Concert Pharmaceuticals,
More informationAn effective approach for obtaining optimal sampling windows for population pharmacokinetic experiments
An effective approach for obtaining optimal sampling windows for population pharmacokinetic experiments Kayode Ogungbenro and Leon Aarons Centre for Applied Pharmacokinetic Research School of Pharmacy
More informationImproving a safety of the Continual Reassessment Method via a modified allocation rule
Improving a safety of the Continual Reassessment Method via a modified allocation rule Pavel Mozgunov, Thomas Jaki Medical and Pharmaceutical Statistics Research Unit, Department of Mathematics and Statistics,
More informationCancer phase I trial design using drug combinations when a fraction of dose limiting toxicities is attributable to one or more agents
Cancer phase I trial design using drug combinations when a fraction of dose limiting toxicities is attributable to one or more agents José L. Jiménez 1, Mourad Tighiouart 2, Mauro Gasparini 1 1 Politecnico
More informationA weighted differential entropy based approach for dose-escalation trials
A weighted differential entropy based approach for dose-escalation trials Pavel Mozgunov, Thomas Jaki Medical and Pharmaceutical Statistics Research Unit, Department of Mathematics and Statistics, Lancaster
More informationPenalized D-optimal design for dose finding
Penalized for dose finding Luc Pronzato Laboratoire I3S, CNRS-Univ. Nice Sophia Antipolis, France 2/ 35 Outline 3/ 35 Bernoulli-type experiments: Y i {0,1} (success or failure) η(x,θ) = Prob(Y i = 1 x
More informationHierarchical expectation propagation for Bayesian aggregation of average data
Hierarchical expectation propagation for Bayesian aggregation of average data Andrew Gelman, Columbia University Sebastian Weber, Novartis also Bob Carpenter, Daniel Lee, Frédéric Bois, Aki Vehtari, and
More informationTwo-stage Adaptive Randomization for Delayed Response in Clinical Trials
Two-stage Adaptive Randomization for Delayed Response in Clinical Trials Guosheng Yin Department of Statistics and Actuarial Science The University of Hong Kong Joint work with J. Xu PSI and RSS Journal
More informationCompound Optimal Designs for Percentile Estimation in Dose-Response Models with Restricted Design Intervals
Compound Optimal Designs for Percentile Estimation in Dose-Response Models with Restricted Design Intervals Stefanie Biedermann 1, Holger Dette 1, Wei Zhu 2 Abstract In dose-response studies, the dose
More informationComparing Adaptive Designs and the. Classical Group Sequential Approach. to Clinical Trial Design
Comparing Adaptive Designs and the Classical Group Sequential Approach to Clinical Trial Design Christopher Jennison Department of Mathematical Sciences, University of Bath, UK http://people.bath.ac.uk/mascj
More informationWeighted differential entropy based approaches to dose-escalation in clinical trials
Weighted differential entropy based approaches to dose-escalation in clinical trials Pavel Mozgunov, Thomas Jaki Medical and Pharmaceutical Statistics Research Unit, Department of Mathematics and Statistics,
More informationPubh 8482: Sequential Analysis
Pubh 8482: Sequential Analysis Joseph S. Koopmeiners Division of Biostatistics University of Minnesota Week 10 Class Summary Last time... We began our discussion of adaptive clinical trials Specifically,
More informationType I error rate control in adaptive designs for confirmatory clinical trials with treatment selection at interim
Type I error rate control in adaptive designs for confirmatory clinical trials with treatment selection at interim Frank Bretz Statistical Methodology, Novartis Joint work with Martin Posch (Medical University
More informationDuke University. Duke Biostatistics and Bioinformatics (B&B) Working Paper Series. Randomized Phase II Clinical Trials using Fisher s Exact Test
Duke University Duke Biostatistics and Bioinformatics (B&B) Working Paper Series Year 2010 Paper 7 Randomized Phase II Clinical Trials using Fisher s Exact Test Sin-Ho Jung sinho.jung@duke.edu This working
More informationAdaptive Designs: Why, How and When?
Adaptive Designs: Why, How and When? Christopher Jennison Department of Mathematical Sciences, University of Bath, UK http://people.bath.ac.uk/mascj ISBS Conference Shanghai, July 2008 1 Adaptive designs:
More informationSuperchain Procedures in Clinical Trials. George Kordzakhia FDA, CDER, Office of Biostatistics Alex Dmitrienko Quintiles Innovation
August 01, 2012 Disclaimer: This presentation reflects the views of the author and should not be construed to represent the views or policies of the U.S. Food and Drug Administration Introduction We describe
More informationBayesian Drug Disease Model with Stan Using published longitudinal data summaries in population models
Bayesian Drug Disease Model with Stan Using published longitudinal data summaries in population models S. Weber 1, B. Carpenter 2, D. Lee 2, F. Y. Bois 3, A. Gelman 2, A. Racine 1 (1) Novartis, Basel;
More informationBAYESIAN DOSE FINDING IN PHASE I CLINICAL TRIALS BASED ON A NEW STATISTICAL FRAMEWORK
Statistica Sinica 17(2007), 531-547 BAYESIAN DOSE FINDING IN PHASE I CLINICAL TRIALS BASED ON A NEW STATISTICAL FRAMEWORK Y. Ji, Y. Li and G. Yin The University of Texas M. D. Anderson Cancer Center Abstract:
More informationOptimal designs for rational regression models
Optimal designs for rational regression models Holger Dette, Christine Kiss Ruhr-Universität Bochum Fakultät für Mathematik 44780 Bochum, Germany holger.dette@ruhr-uni-bochum.de tina.kiss12@googlemail.com
More informationAn extrapolation framework to specify requirements for drug development in children
An framework to specify requirements for drug development in children Martin Posch joint work with Gerald Hlavin Franz König Christoph Male Peter Bauer Medical University of Vienna Clinical Trials in Small
More informationPubH 7470: STATISTICS FOR TRANSLATIONAL & CLINICAL RESEARCH
PubH 7470: STATISTICS FOR TRANSLATIONAL & CLINICAL RESEARCH The First Step: SAMPLE SIZE DETERMINATION THE ULTIMATE GOAL The most important, ultimate step of any of clinical research is to do draw inferences;
More informationA decision-theoretic phase I II design for ordinal outcomes in two cycles
Biostatistics (2016), 17, 2,pp. 304 319 doi:10.1093/biostatistics/kxv045 Advance Access publication on November 9, 2015 A decision-theoretic phase I II design for ordinal outcomes in two cycles JUHEE LEE
More informationOptimal Adaptive Designs for Dose Finding in Early Phase Clinical Trials
Optimal Adaptive Designs for Dose Finding in Early Phase Clinical Trials Alam, Muhammad Iftakhar The copyright of this thesis rests with the author and no quotation from it or information derived from
More informationInterim Monitoring of Clinical Trials: Decision Theory, Dynamic Programming. and Optimal Stopping
Interim Monitoring of Clinical Trials: Decision Theory, Dynamic Programming and Optimal Stopping Christopher Jennison Department of Mathematical Sciences, University of Bath, UK http://people.bath.ac.uk/mascj
More informationOptimising Group Sequential Designs. Decision Theory, Dynamic Programming. and Optimal Stopping
: Decision Theory, Dynamic Programming and Optimal Stopping Christopher Jennison Department of Mathematical Sciences, University of Bath, UK http://people.bath.ac.uk/mascj InSPiRe Conference on Methodology
More informationA Bayesian Stopping Rule for a Single Arm Study: with a Case Study of Stem Cell Transplantation
A Bayesian Stopping Rule for a Single Arm Study: with a Case Study of Stem Cell Transplantation Chao-Yin Chen Kathryn Chaloner University of Minnesota University of Iowa May-15-2002 1 A Case Study: MT9928
More informationBayesian Optimal Interval Design for Phase I Clinical Trials
Bayesian Optimal Interval Design for Phase I Clinical Trials Department of Biostatistics The University of Texas, MD Anderson Cancer Center Joint work with Suyu Liu Phase I oncology trials The goal of
More informationDesigns for Clinical Trials
Designs for Clinical Trials Chapter 5 Reading Instructions 5.: Introduction 5.: Parallel Group Designs (read) 5.3: Cluster Randomized Designs (less important) 5.4: Crossover Designs (read+copies) 5.5:
More informationMULTIPLE-OBJECTIVE DESIGNS IN A DOSE-RESPONSE EXPERIMENT
New Developments and Applications in Experimental Design IMS Lecture Notes - Monograph Series (1998) Volume 34 MULTIPLE-OBJECTIVE DESIGNS IN A DOSE-RESPONSE EXPERIMENT BY WEI ZHU AND WENG KEE WONG 1 State
More informationThis presentation contains forward-looking statements within the meaning of the "safe harbor" provisions of the Private Securities Litigation Reform
This presentation contains forward-looking statements within the meaning of the "safe harbor" provisions of the Private Securities Litigation Reform Act of 1995, as amended. These forward-looking statements
More informationBayesian methods for sample size determination and their use in clinical trials
Bayesian methods for sample size determination and their use in clinical trials Stefania Gubbiotti Abstract This paper deals with determination of a sample size that guarantees the success of a trial.
More informationCTD General Questions and Answers
Last Update : November 11, 1. CTD General and Format or Content? Will a dossier using the CTD format (Modules 2 to 5) be identical for all regions? Not necessarily. The CTD provides a common format for
More informationThe general concept of pharmacokinetics
The general concept of pharmacokinetics Hartmut Derendorf, PhD University of Florida Pharmacokinetics the time course of drug and metabolite concentrations in the body Pharmacokinetics helps to optimize
More informationEfficient algorithms for calculating optimal designs in pharmacokinetics and dose finding studies
Efficient algorithms for calculating optimal designs in pharmacokinetics and dose finding studies Tim Holland-Letz Ruhr-Universität Bochum Medizinische Fakultät 44780 Bochum, Germany email: tim.holland-letz@rub.de
More informationImplementing Response-Adaptive Randomization in Multi-Armed Survival Trials
Implementing Response-Adaptive Randomization in Multi-Armed Survival Trials BASS Conference 2009 Alex Sverdlov, Bristol-Myers Squibb A.Sverdlov (B-MS) Response-Adaptive Randomization 1 / 35 Joint work
More informationModeling & Simulation to Improve the Design of Clinical Trials
Modeling & Simulation to Improve the Design of Clinical Trials Gary L. Rosner Oncology Biostatistics and Bioinformatics The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins Joint work with Lorenzo
More informationSleep data, two drugs Ch13.xls
Model Based Statistics in Biology. Part IV. The General Linear Mixed Model.. Chapter 13.3 Fixed*Random Effects (Paired t-test) ReCap. Part I (Chapters 1,2,3,4), Part II (Ch 5, 6, 7) ReCap Part III (Ch
More informationGeneralizing the MCPMod methodology beyond normal, independent data
Generalizing the MCPMod methodology beyond normal, independent data José Pinheiro Joint work with Frank Bretz and Björn Bornkamp Novartis AG Trends and Innovations in Clinical Trial Statistics Conference
More informationModelling a complex input process in a population pharmacokinetic analysis: example of mavoglurant oral absorption in healthy subjects
Modelling a complex input process in a population pharmacokinetic analysis: example of mavoglurant oral absorption in healthy subjects Thierry Wendling Manchester Pharmacy School Novartis Institutes for
More informationarxiv: v1 [stat.me] 11 Feb 2014
A New Approach to Designing Phase I-II Cancer Trials for Cytotoxic Chemotherapies Jay Bartroff, Tze Leung Lai, and Balasubramanian Narasimhan arxiv:1402.2550v1 [stat.me] 11 Feb 2014 Abstract Recently there
More informationThe Design of a Survival Study
The Design of a Survival Study The design of survival studies are usually based on the logrank test, and sometimes assumes the exponential distribution. As in standard designs, the power depends on The
More informationMODELING THE ABSORPTION, CIRCULATION, AND METABOLISM OF TIRAPAZAMINE
MODELING THE ABSORPTION, CIRCULATION, AND METABOLISM OF TIRAPAZAMINE Olivia Nguyen and Xiaoyu Shi Problem Statement: Tirapazamine (TPZ; 1,2,4-benzotriazin-3-amine 1,4-dioxide) is a hypoxia-activated prodrug
More informationCase Study in the Use of Bayesian Hierarchical Modeling and Simulation for Design and Analysis of a Clinical Trial
Case Study in the Use of Bayesian Hierarchical Modeling and Simulation for Design and Analysis of a Clinical Trial William R. Gillespie Pharsight Corporation Cary, North Carolina, USA PAGE 2003 Verona,
More informationDesigning dose finding studies with an active control for exponential families
Designing dose finding studies with an active control for exponential families Holger Dette, Katrin Kettelhake Ruhr-Universität Bochum Fakultät für Mathematik 44780 Bochum, Germany e-mail: holger.dette@ruhr-uni-bochum.de
More informationSample size considerations in IM assays
Sample size considerations in IM assays Lanju Zhang Senior Principal Statistician, Nonclinical Biostatistics Midwest Biopharmaceutical Statistics Workshop May 6, 0 Outline Introduction Homogeneous population
More informationAdaptive designs beyond p-value combination methods. Ekkehard Glimm, Novartis Pharma EAST user group meeting Basel, 31 May 2013
Adaptive designs beyond p-value combination methods Ekkehard Glimm, Novartis Pharma EAST user group meeting Basel, 31 May 2013 Outline Introduction Combination-p-value method and conditional error function
More informationGroup-Sequential Tests for One Proportion in a Fleming Design
Chapter 126 Group-Sequential Tests for One Proportion in a Fleming Design Introduction This procedure computes power and sample size for the single-arm group-sequential (multiple-stage) designs of Fleming
More informationGroup Sequential Designs: Theory, Computation and Optimisation
Group Sequential Designs: Theory, Computation and Optimisation Christopher Jennison Department of Mathematical Sciences, University of Bath, UK http://people.bath.ac.uk/mascj 8th International Conference
More informationA Case Study on the Optimal Design of Clinical Pharmacology Trials with Restrictions on the Dosing Schedule
Japanese Journal of iometrics Vol 30, No 1, 1 16 (2009) Original Article A ase Study on the Optimal Design of linical Pharmacology Trials with Restrictions on the Dosing Schedule Kazuyo Kikuchi 1, hikuma
More informationMultiple Testing in Group Sequential Clinical Trials
Multiple Testing in Group Sequential Clinical Trials Tian Zhao Supervisor: Michael Baron Department of Mathematical Sciences University of Texas at Dallas txz122@utdallas.edu 7/2/213 1 Sequential statistics
More informationDose-finding for Multi-drug Combinations
Outline Background Methods Results Conclusions Multiple-agent Trials In trials combining more than one drug, monotonicity assumption may not hold for every dose The ordering between toxicity probabilities
More informationOptimal Design for Dose Finding Studies on Safety and Efficacy
Optimal Design for Dose Finding Studies on Safety and Efficacy Dissertation zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) von Dipl.-Stat. Katrin Roth geb. am 16.02.1981
More informationThe SEQDESIGN Procedure
SAS/STAT 9.2 User s Guide, Second Edition The SEQDESIGN Procedure (Book Excerpt) This document is an individual chapter from the SAS/STAT 9.2 User s Guide, Second Edition. The correct bibliographic citation
More informationDose-finding for Multi-drug Combinations
September 16, 2011 Outline Background Methods Results Conclusions Multiple-agent Trials In trials combining more than one drug, monotonicity assumption may not hold for every dose The ordering between
More informationAP-Optimum Designs for Minimizing the Average Variance and Probability-Based Optimality
AP-Optimum Designs for Minimizing the Average Variance and Probability-Based Optimality Authors: N. M. Kilany Faculty of Science, Menoufia University Menoufia, Egypt. (neveenkilany@hotmail.com) W. A. Hassanein
More informationEstimation of Optimal Treatment Regimes Via Machine Learning. Marie Davidian
Estimation of Optimal Treatment Regimes Via Machine Learning Marie Davidian Department of Statistics North Carolina State University Triangle Machine Learning Day April 3, 2018 1/28 Optimal DTRs Via ML
More informationIndividualized Treatment Effects with Censored Data via Nonparametric Accelerated Failure Time Models
Individualized Treatment Effects with Censored Data via Nonparametric Accelerated Failure Time Models Nicholas C. Henderson Thomas A. Louis Gary Rosner Ravi Varadhan Johns Hopkins University July 31, 2018
More informationGeneralizing the MCPMod methodology beyond normal, independent data
Generalizing the MCPMod methodology beyond normal, independent data José Pinheiro Joint work with Frank Bretz and Björn Bornkamp Novartis AG ASA NJ Chapter 35 th Annual Spring Symposium June 06, 2014 Outline
More informationMA/ST 810 Mathematical-Statistical Modeling and Analysis of Complex Systems
MA/ST 810 Mathematical-Statistical Modeling and Analysis of Complex Systems Integrating Mathematical and Statistical Models Recap of mathematical models Models and data Statistical models and sources of
More information5 Handling Constraints
5 Handling Constraints Engineering design optimization problems are very rarely unconstrained. Moreover, the constraints that appear in these problems are typically nonlinear. This motivates our interest
More informationFrom Rothamsted to Northwick Park: designing experiments to avoid bias and reduce variance
1/53 From Rothamsted to Northwick Park: designing experiments to avoid bias and reduce variance R A Bailey rabailey@qmulacuk North Eastern local group of the Royal Statistical Society, 29 March 2012 A
More informationSequential Importance Sampling for Rare Event Estimation with Computer Experiments
Sequential Importance Sampling for Rare Event Estimation with Computer Experiments Brian Williams and Rick Picard LA-UR-12-22467 Statistical Sciences Group, Los Alamos National Laboratory Abstract Importance
More informationOn Multiple-Objective Nonlinear Optimal Designs
On Multiple-Objective Nonlinear Optimal Designs Qianshun Cheng, Dibyen Majumdar, and Min Yang December 1, 2015 Abstract Experiments with multiple objectives form a staple diet of modern scientific research.
More informationGlobal Sensitivity Analysis for Repeated Measures Studies with Informative Drop-out: A Semi-Parametric Approach
Global for Repeated Measures Studies with Informative Drop-out: A Semi-Parametric Approach Daniel Aidan McDermott Ivan Diaz Johns Hopkins University Ibrahim Turkoz Janssen Research and Development September
More information1Non Linear mixed effects ordinary differential equations models. M. Prague - SISTM - NLME-ODE September 27,
GDR MaMoVi 2017 Parameter estimation in Models with Random effects based on Ordinary Differential Equations: A bayesian maximum a posteriori approach. Mélanie PRAGUE, Daniel COMMENGES & Rodolphe THIÉBAUT
More informationOverrunning in Clinical Trials: a Methodological Review
Overrunning in Clinical Trials: a Methodological Review Dario Gregori Unit of Biostatistics, Epidemiology and Public Health Department of Cardiac, Thoracic and Vascular Sciences dario.gregori@unipd.it
More informationMODULE -4 BAYEIAN LEARNING
MODULE -4 BAYEIAN LEARNING CONTENT Introduction Bayes theorem Bayes theorem and concept learning Maximum likelihood and Least Squared Error Hypothesis Maximum likelihood Hypotheses for predicting probabilities
More informationEstimation in Flexible Adaptive Designs
Estimation in Flexible Adaptive Designs Werner Brannath Section of Medical Statistics Core Unit for Medical Statistics and Informatics Medical University of Vienna BBS and EFSPI Scientific Seminar on Adaptive
More informationEstimation and Model Selection in Mixed Effects Models Part I. Adeline Samson 1
Estimation and Model Selection in Mixed Effects Models Part I Adeline Samson 1 1 University Paris Descartes Summer school 2009 - Lipari, Italy These slides are based on Marc Lavielle s slides Outline 1
More information4. Issues in Trial Monitoring
4. Issues in Trial Monitoring 4.1 Elements of Trial Monitoring Monitoring trial process and quality Infrastructure requirements and DSMBs 4.2 Interim analyses: group sequential trial design 4.3 Group sequential
More informationOptimal Designs for Some Selected Nonlinear Models
Optimal Designs for Some Selected Nonlinear Models A.S. Hedayat,, Ying Zhou Min Yang Department of Mathematics, Statistics, and Computer Science University of Illinois at Chicago Science and Engineering
More informationAdaptive designs to maximize power. trials with multiple treatments
in clinical trials with multiple treatments Technion - Israel Institute of Technology January 17, 2013 The problem A, B, C are three treatments with unknown probabilities of success, p A, p B, p C. A -
More informationModeling biological systems - The Pharmaco-Kinetic-Dynamic paradigm
Modeling biological systems - The Pharmaco-Kinetic-Dynamic paradigm Main features:. Time profiles and complex systems 2. Disturbed and sparse measurements 3. Mixed variabilities One of the most highly
More informationDesign of preclinical combination studies
University of Manchester, UK Talk Outline 1 Preliminaries What is a drug combination? Data structures. Ray design 2 Combination index Sources of variability 3 Two drugs Analysis of data 4 Types of studies
More informationA Clinical Trial Simulation System, Its Applications, and Future Challenges. Peter Westfall, Texas Tech University Kuenhi Tsai, Merck Research Lab
A Clinical Trial Simulation System, Its Applications, and Future Challenges Peter Westfall, Texas Tech University Kuenhi Tsai, Merck Research Lab Acknowledgement Major collaborators Stephan Ogenstand,
More informationSupport Vector Machines
Support Vector Machines Stephan Dreiseitl University of Applied Sciences Upper Austria at Hagenberg Harvard-MIT Division of Health Sciences and Technology HST.951J: Medical Decision Support Overview Motivation
More informationFinding Critical Values with Prefixed Early. Stopping Boundaries and Controlled Type I. Error for A Two-Stage Adaptive Design
Finding Critical Values with Prefixed Early Stopping Boundaries and Controlled Type I Error for A Two-Stage Adaptive Design Jingjing Chen 1, Sanat K. Sarkar 2, and Frank Bretz 3 September 27, 2009 1 ClinForce-GSK
More informationPENALIZED AND RESPONSE-ADAPTIVE OPTIMAL DESIGNS
LABORATOIRE INFORMATIQUE, SIGNAUX ET SYSTÈMES DE SOPHIA ANTIPOLIS UMR 6070 PENALIZED AND RESPONSE-ADAPTIVE OPTIMAL DESIGNS WITH APPLICATION TO DOSE-FINDING Luc Pronzato Equipe SYSTEMES Rapport de recherche
More informationComplexity of stochastic branch and bound methods for belief tree search in Bayesian reinforcement learning
Complexity of stochastic branch and bound methods for belief tree search in Bayesian reinforcement learning Christos Dimitrakakis Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands
More information2 Mathematical Model, Sequential Probability Ratio Test, Distortions
AUSTRIAN JOURNAL OF STATISTICS Volume 34 (2005), Number 2, 153 162 Robust Sequential Testing of Hypotheses on Discrete Probability Distributions Alexey Kharin and Dzmitry Kishylau Belarusian State University,
More information1 of 10 2/7/ :49 AM
Limit of a Function (Section 2.2) (2344034) Question 1 2 3 4 5 6 7 8 9 10 11 12 1. Question Details SCalcET7 2.2.001. [1733502] Explain what is meant by the equation f(x) = 5. x 9 If x 1 9 < x 2 9, then
More informationBMA-Mod : A Bayesian Model Averaging Strategy for Determining Dose-Response Relationships in the Presence of Model Uncertainty
BMA-Mod : A Bayesian Model Averaging Strategy for Determining -Response Relationships in the Presence of Model Uncertainty A. Lawrence Gould KOL 20 October, 2017 Overview and Motivation -Response Trials
More informationMultiplicative Algorithm for computing Optimum Designs
for computing s DAE Conference 2012 Roberto Dorta-Guerra, Raúl Martín Martín, Mercedes Fernández-Guerrero and Licesio J. Rodríguez-Aragón Optimum Experimental Design group October 20, 2012 http://areaestadistica.uclm.es/oed
More informationDesign of Multiregional Clinical Trials (MRCT) Theory and Practice
Design of Multiregional Clinical Trials (MRCT) Theory and Practice Gordon Lan Janssen R&D, Johnson & Johnson BASS 2015, Rockville, Maryland Collaborators: Fei Chen and Gang Li, Johnson & Johnson BASS 2015_LAN
More informationCore Courses for Students Who Enrolled Prior to Fall 2018
Biostatistics and Applied Data Analysis Students must take one of the following two sequences: Sequence 1 Biostatistics and Data Analysis I (PHP 2507) This course, the first in a year long, two-course
More informationLOCALLY D-OPTIMAL DESIGNS BASED ON A CLASS OF COMPOSED MODELS RESULTED FROM BLENDING EMAX AND ONE-COMPARTMENT MODELS. By X. Fang, A.S.
Submitted to the Annals of Statistics LOCALLY D-OPTIMAL DESIGNS BASED ON A CLASS OF COMPOSED MODELS RESULTED FROM BLENDING EMAX AND ONE-COMPARTMENT MODELS By X. Fang, A.S. Hedayat University of Illinois
More informationA combined approach for claiming equivalence and difference for multiple endpoints with application in GMO-trials 1
A combined approach for claiming equivalence and difference for multiple endpoints with application in GMO-trials 1 Ludwig A. Hothorn Institute of Biostatistics Leibniz University Hannover e-mail: hothorn@biostat.uni-hannover.de
More informationRisk-Averse Control of Partially Observable Markov Systems. Andrzej Ruszczyński. Workshop on Dynamic Multivariate Programming Vienna, March 2018
Risk-Averse Control of Partially Observable Markov Systems Workshop on Dynamic Multivariate Programming Vienna, March 2018 Partially Observable Discrete-Time Models Markov Process: fx t ; Y t g td1;:::;t
More informationA Multiple Comparison Procedure for Populations with Unequal Variances
Journal of Statistical Theory and Applications Volume 11, Number 2, 212, pp. 165-181 ISSN 1538-7887 A Multiple Comparison Procedure for Populations with Unequal Variances Hong Li Department of Mathematical
More informationBayesian Statistics for Personalized Medicine. David Yang
Bayesian Statistics for Personalized Medicine David Yang Outline Why Bayesian Statistics for Personalized Medicine? A Network-based Bayesian Strategy for Genomic Biomarker Discovery Part One Why Bayesian
More information