ECLT 5810 Linear Regression and Logistic Regression for Classification. Prof. Wai Lam

Size: px
Start display at page:

Download "ECLT 5810 Linear Regression and Logistic Regression for Classification. Prof. Wai Lam"

Transcription

1 ECLT 5810 Linear Regression and Logistic Regression for Classification Prof. Wai Lam

2 Linear Regression Models Least Squares Input vectors is an attribute / feature / predictor (independent variable) The linear regression model: The output is called response (dependent variable) s are unknown parameters (coefficients) 2

3 Linear Regression Models Least Squares A set of training data Each corresponding to attributes Each is a class attribute value / a label Wish to estimate the parameters 3

4 Linear Regression Models Least Squares One common approach the method of least squares: Pick the coefficients minimize the residual sum of squares: to 4

5 Linear Regression Models Least Squares This criterion is reasonable if the training observations represent independent draws. Even if the s were not drawn randomly, the criterion is still valid if the s are conditionally independent given the inputs. 5

6 Linear Regression Models Least Squares Make no assumption about the validity of the model Simply finds the best linear fit to the data 6

7 Linear Regression Models Finding Residual Sum of Squares Denote by the matrix with each row an input vector (with a 1 in the first position) Let be the N vector of outputs in the training set Quadratic function in the parameters: 7

8 Linear Regression Models Finding Residual Sum of Squares Set the first derivation to zero: Obtain the unique solution: 8

9 Linear Regression Models Orthogonal Projection The fitted values at the training inputs are: The matrix appearing in the above equation, called hat matrix because it puts the hat on 9

10 Linear Regression Models Example Training Data: x y (1, 2, 1) 22 (2, 0, 4) 49 (3, 4, 2) 39 (4, 2, 3) 52 (5, 4, 1) 38 10

11 Linear Regression Models Example

12 Linear Regression Models Example residual vector

13 Discriminant Functions Suppose there are classes, labeled 1,2,, A class of methods that model for each class. Then, classify to the class with the largest value for its discriminant function Decision boundary between class and is that set of points for which l 13

14 Suppose is the class conditional density of in class, i.e., Let be the prior probability of class, with A simple application of Bayes theorem: l l l l 14

15 Desire to model the posterior probabilities of the classes via linear functions in (p dimensional vector) Ensuring they sum to one and remain in Model: 15

16 Specified in terms of log odds or logit transformations Choice of denominator is arbitrary estimates are equivariant under this choice l l l Sum to 1 l l l 16

17 Two class Classification For two class classification, we can model two classes as 0 and 1. Treating the class 1 as the concept of interest, the posterior probability can be regarded as the class membership probability: Pr 1 exp 1exp logistic function As a result, it maps in p dimensional space to a value in [0,1] 17

18 Shape of sigmoid curve Consider 1 dimensional Pr 18

19 An Example of One dimension We wish to predict death from baseline APACHE II score of patients. Let Pr be the probability that a patient with score will die. Note that linear regression would not work well since it could produce probabilities less than 0 or greater than 1 19

20 An Example of One dimension Data that has a sharp survival cut off point between patients who live or die will lead to a large value of 20

21 An Example of One dimension One the other hand, if the data has a lengthy transition from survival to death, it will lead to a low value of 21

22 Model Fitting for General Cases (K classes, p Dimension) Logistic regression models fit by maximum likelihood using the conditional likelihood of given completely specifies the conditional distribution the multinomial distribution is appropriate 22

23 Model Fitting for General Cases (K classes, p Dimension) Let entire parameter set be, then Log likelihood for observations of input data and class labels: where Find the model that maximizes the log likelihood. 23

24 Example The subset of the Coronary Risk Factor Study (CORIS) baseline survey, carried out in three rural areas of the Western Cape, South Africa Aim: establish the intensity of ischemic heart disease risk factors in that high incidence region Response variable is the presence or absence of myocardial infraction (MI) at the time of survey 160 cases in data set, sample of 302 controls 24

25 Example 25

26 Example Fit a logistic regression model by maximum likelihood, giving the results shown in the next slide z scores for each coefficients in the model (coefficients divided by their standard errors) 26

27 Example Results from a logistic regression fit to the South African heart disease data: Coefficient Std. Error Z Score (Intercept) sbp tobacco ldl famhist obesity alcohol age

28 Example z scores greater than approximately 2 in absolute value is significant at the 5% level Some surprises in the table of coefficients sbp and obesity appear to be not significant On their own, both sbp and obesity are significant, with positive sign Presence of many other correlated variables no longer needed (can even get a negative sign) 28

29 3 common transformation/ link function (provided by SAS): Logit : ln(p/1-p) (We call this log of odd ratio) Probit: Normal inverse of p (Recall: normal table s mapping scheme) Complementary log-log: ln(-ln(1-p)) The choice of link function depends on your purpose rather than performance. They all perform equally good but the implications is a bit different. 29

30 Related Measures 30

31 Related Measures Wald s Chi-square We could treat an effect as significant if the tail probability is small enough (< 5%). If we are using the model for predicting the outcome rather than the probability for that outcome (the case when the criterion is set to minimize loss), the interpretation for misclassification rate/ profit and loss/ ROC curve/ lift chart is similar to those for decision tree. 31

ECLT 5810 Linear Regression and Logistic Regression for Classification. Prof. Wai Lam

ECLT 5810 Linear Regression and Logistic Regression for Classification. Prof. Wai Lam ECLT 5810 Linear Regression and Logistic Regression for Classification Prof. Wai Lam Linear Regression Models Least Squares Input vectors is an attribute / feature / predictor (independent variable) The

More information

MS&E 226: Small Data

MS&E 226: Small Data MS&E 226: Small Data Lecture 9: Logistic regression (v2) Ramesh Johari ramesh.johari@stanford.edu 1 / 28 Regression methods for binary outcomes 2 / 28 Binary outcomes For the duration of this lecture suppose

More information

Machine Learning Linear Classification. Prof. Matteo Matteucci

Machine Learning Linear Classification. Prof. Matteo Matteucci Machine Learning Linear Classification Prof. Matteo Matteucci Recall from the first lecture 2 X R p Regression Y R Continuous Output X R p Y {Ω 0, Ω 1,, Ω K } Classification Discrete Output X R p Y (X)

More information

MS&E 226: Small Data

MS&E 226: Small Data MS&E 226: Small Data Lecture 12: Logistic regression (v1) Ramesh Johari ramesh.johari@stanford.edu Fall 2015 1 / 30 Regression methods for binary outcomes 2 / 30 Binary outcomes For the duration of this

More information

Lecture 4: Newton s method and gradient descent

Lecture 4: Newton s method and gradient descent Lecture 4: Newton s method and gradient descent Newton s method Functional iteration Fitting linear regression Fitting logistic regression Prof. Yao Xie, ISyE 6416, Computational Statistics, Georgia Tech

More information

MATH 829: Introduction to Data Mining and Analysis Logistic regression

MATH 829: Introduction to Data Mining and Analysis Logistic regression 1/11 MATH 829: Introduction to Data Mining and Analysis Logistic regression Dominique Guillot Departments of Mathematical Sciences University of Delaware March 7, 2016 Logistic regression 2/11 Suppose

More information

STA 450/4000 S: January

STA 450/4000 S: January STA 450/4000 S: January 6 005 Notes Friday tutorial on R programming reminder office hours on - F; -4 R The book Modern Applied Statistics with S by Venables and Ripley is very useful. Make sure you have

More information

Probabilistic classification CE-717: Machine Learning Sharif University of Technology. M. Soleymani Fall 2016

Probabilistic classification CE-717: Machine Learning Sharif University of Technology. M. Soleymani Fall 2016 Probabilistic classification CE-717: Machine Learning Sharif University of Technology M. Soleymani Fall 2016 Topics Probabilistic approach Bayes decision theory Generative models Gaussian Bayes classifier

More information

Intro. ANN & Fuzzy Systems. Lecture 15. Pattern Classification (I): Statistical Formulation

Intro. ANN & Fuzzy Systems. Lecture 15. Pattern Classification (I): Statistical Formulation Lecture 15. Pattern Classification (I): Statistical Formulation Outline Statistical Pattern Recognition Maximum Posterior Probability (MAP) Classifier Maximum Likelihood (ML) Classifier K-Nearest Neighbor

More information

Administration. Homework 1 on web page, due Feb 11 NSERC summer undergraduate award applications due Feb 5 Some helpful books

Administration. Homework 1 on web page, due Feb 11 NSERC summer undergraduate award applications due Feb 5 Some helpful books STA 44/04 Jan 6, 00 / 5 Administration Homework on web page, due Feb NSERC summer undergraduate award applications due Feb 5 Some helpful books STA 44/04 Jan 6, 00... administration / 5 STA 44/04 Jan 6,

More information

2/26/2017. PSY 512: Advanced Statistics for Psychological and Behavioral Research 2

2/26/2017. PSY 512: Advanced Statistics for Psychological and Behavioral Research 2 PSY 512: Advanced Statistics for Psychological and Behavioral Research 2 When and why do we use logistic regression? Binary Multinomial Theory behind logistic regression Assessing the model Assessing predictors

More information

Linear Classification: Probabilistic Generative Models

Linear Classification: Probabilistic Generative Models Linear Classification: Probabilistic Generative Models Sargur N. University at Buffalo, State University of New York USA 1 Linear Classification using Probabilistic Generative Models Topics 1. Overview

More information

Lecture 5: LDA and Logistic Regression

Lecture 5: LDA and Logistic Regression Lecture 5: and Logistic Regression Hao Helen Zhang Hao Helen Zhang Lecture 5: and Logistic Regression 1 / 39 Outline Linear Classification Methods Two Popular Linear Models for Classification Linear Discriminant

More information

Classification. Chapter Introduction. 6.2 The Bayes classifier

Classification. Chapter Introduction. 6.2 The Bayes classifier Chapter 6 Classification 6.1 Introduction Often encountered in applications is the situation where the response variable Y takes values in a finite set of labels. For example, the response Y could encode

More information

Logistic Regression and Generalized Linear Models

Logistic Regression and Generalized Linear Models Logistic Regression and Generalized Linear Models Sridhar Mahadevan mahadeva@cs.umass.edu University of Massachusetts Sridhar Mahadevan: CMPSCI 689 p. 1/2 Topics Generative vs. Discriminative models In

More information

Beyond GLM and likelihood

Beyond GLM and likelihood Stat 6620: Applied Linear Models Department of Statistics Western Michigan University Statistics curriculum Core knowledge (modeling and estimation) Math stat 1 (probability, distributions, convergence

More information

Linear Regression Models P8111

Linear Regression Models P8111 Linear Regression Models P8111 Lecture 25 Jeff Goldsmith April 26, 2016 1 of 37 Today s Lecture Logistic regression / GLMs Model framework Interpretation Estimation 2 of 37 Linear regression Course started

More information

Data Mining 2018 Logistic Regression Text Classification

Data Mining 2018 Logistic Regression Text Classification Data Mining 2018 Logistic Regression Text Classification Ad Feelders Universiteit Utrecht Ad Feelders ( Universiteit Utrecht ) Data Mining 1 / 50 Two types of approaches to classification In (probabilistic)

More information

Stat 642, Lecture notes for 04/12/05 96

Stat 642, Lecture notes for 04/12/05 96 Stat 642, Lecture notes for 04/12/05 96 Hosmer-Lemeshow Statistic The Hosmer-Lemeshow Statistic is another measure of lack of fit. Hosmer and Lemeshow recommend partitioning the observations into 10 equal

More information

22s:152 Applied Linear Regression. Example: Study on lead levels in children. Ch. 14 (sec. 1) and Ch. 15 (sec. 1 & 4): Logistic Regression

22s:152 Applied Linear Regression. Example: Study on lead levels in children. Ch. 14 (sec. 1) and Ch. 15 (sec. 1 & 4): Logistic Regression 22s:52 Applied Linear Regression Ch. 4 (sec. and Ch. 5 (sec. & 4: Logistic Regression Logistic Regression When the response variable is a binary variable, such as 0 or live or die fail or succeed then

More information

University of Cambridge Engineering Part IIB Module 3F3: Signal and Pattern Processing Handout 2:. The Multivariate Gaussian & Decision Boundaries

University of Cambridge Engineering Part IIB Module 3F3: Signal and Pattern Processing Handout 2:. The Multivariate Gaussian & Decision Boundaries University of Cambridge Engineering Part IIB Module 3F3: Signal and Pattern Processing Handout :. The Multivariate Gaussian & Decision Boundaries..15.1.5 1 8 6 6 8 1 Mark Gales mjfg@eng.cam.ac.uk Lent

More information

Section IX. Introduction to Logistic Regression for binary outcomes. Poisson regression

Section IX. Introduction to Logistic Regression for binary outcomes. Poisson regression Section IX Introduction to Logistic Regression for binary outcomes Poisson regression 0 Sec 9 - Logistic regression In linear regression, we studied models where Y is a continuous variable. What about

More information

PubH 7470: STATISTICS FOR TRANSLATIONAL & CLINICAL RESEARCH

PubH 7470: STATISTICS FOR TRANSLATIONAL & CLINICAL RESEARCH PubH 7470: STATISTICS FOR TRANSLATIONAL & CLINICAL RESEARCH The First Step: SAMPLE SIZE DETERMINATION THE ULTIMATE GOAL The most important, ultimate step of any of clinical research is to do draw inferences;

More information

Problem #1 #2 #3 #4 #5 #6 Total Points /6 /8 /14 /10 /8 /10 /56

Problem #1 #2 #3 #4 #5 #6 Total Points /6 /8 /14 /10 /8 /10 /56 STAT 391 - Spring Quarter 2017 - Midterm 1 - April 27, 2017 Name: Student ID Number: Problem #1 #2 #3 #4 #5 #6 Total Points /6 /8 /14 /10 /8 /10 /56 Directions. Read directions carefully and show all your

More information

LINEAR MODELS FOR CLASSIFICATION. J. Elder CSE 6390/PSYC 6225 Computational Modeling of Visual Perception

LINEAR MODELS FOR CLASSIFICATION. J. Elder CSE 6390/PSYC 6225 Computational Modeling of Visual Perception LINEAR MODELS FOR CLASSIFICATION Classification: Problem Statement 2 In regression, we are modeling the relationship between a continuous input variable x and a continuous target variable t. In classification,

More information

Universität Potsdam Institut für Informatik Lehrstuhl Maschinelles Lernen. Linear Classifiers. Blaine Nelson, Tobias Scheffer

Universität Potsdam Institut für Informatik Lehrstuhl Maschinelles Lernen. Linear Classifiers. Blaine Nelson, Tobias Scheffer Universität Potsdam Institut für Informatik Lehrstuhl Linear Classifiers Blaine Nelson, Tobias Scheffer Contents Classification Problem Bayesian Classifier Decision Linear Classifiers, MAP Models Logistic

More information

Logistic Regression Review Fall 2012 Recitation. September 25, 2012 TA: Selen Uguroglu

Logistic Regression Review Fall 2012 Recitation. September 25, 2012 TA: Selen Uguroglu Logistic Regression Review 10-601 Fall 2012 Recitation September 25, 2012 TA: Selen Uguroglu!1 Outline Decision Theory Logistic regression Goal Loss function Inference Gradient Descent!2 Training Data

More information

Mark your answers ON THE EXAM ITSELF. If you are not sure of your answer you may wish to provide a brief explanation.

Mark your answers ON THE EXAM ITSELF. If you are not sure of your answer you may wish to provide a brief explanation. CS 189 Spring 2015 Introduction to Machine Learning Midterm You have 80 minutes for the exam. The exam is closed book, closed notes except your one-page crib sheet. No calculators or electronic items.

More information

Bayesian Learning (II)

Bayesian Learning (II) Universität Potsdam Institut für Informatik Lehrstuhl Maschinelles Lernen Bayesian Learning (II) Niels Landwehr Overview Probabilities, expected values, variance Basic concepts of Bayesian learning MAP

More information

Linear Classification. CSE 6363 Machine Learning Vassilis Athitsos Computer Science and Engineering Department University of Texas at Arlington

Linear Classification. CSE 6363 Machine Learning Vassilis Athitsos Computer Science and Engineering Department University of Texas at Arlington Linear Classification CSE 6363 Machine Learning Vassilis Athitsos Computer Science and Engineering Department University of Texas at Arlington 1 Example of Linear Classification Red points: patterns belonging

More information

Data Mining Stat 588

Data Mining Stat 588 Data Mining Stat 588 Lecture 9: Basis Expansions Department of Statistics & Biostatistics Rutgers University Nov 01, 2011 Regression and Classification Linear Regression. E(Y X) = f(x) We want to learn

More information

> DEPARTMENT OF MATHEMATICS AND COMPUTER SCIENCE GRAVIS 2016 BASEL. Logistic Regression. Pattern Recognition 2016 Sandro Schönborn University of Basel

> DEPARTMENT OF MATHEMATICS AND COMPUTER SCIENCE GRAVIS 2016 BASEL. Logistic Regression. Pattern Recognition 2016 Sandro Schönborn University of Basel Logistic Regression Pattern Recognition 2016 Sandro Schönborn University of Basel Two Worlds: Probabilistic & Algorithmic We have seen two conceptual approaches to classification: data class density estimation

More information

COMS 4771 Regression. Nakul Verma

COMS 4771 Regression. Nakul Verma COMS 4771 Regression Nakul Verma Last time Support Vector Machines Maximum Margin formulation Constrained Optimization Lagrange Duality Theory Convex Optimization SVM dual and Interpretation How get the

More information

σ(a) = a N (x; 0, 1 2 ) dx. σ(a) = Φ(a) =

σ(a) = a N (x; 0, 1 2 ) dx. σ(a) = Φ(a) = Until now we have always worked with likelihoods and prior distributions that were conjugate to each other, allowing the computation of the posterior distribution to be done in closed form. Unfortunately,

More information

Introduction to Statistical Analysis

Introduction to Statistical Analysis Introduction to Statistical Analysis Changyu Shen Richard A. and Susan F. Smith Center for Outcomes Research in Cardiology Beth Israel Deaconess Medical Center Harvard Medical School Objectives Descriptive

More information

Classification CE-717: Machine Learning Sharif University of Technology. M. Soleymani Fall 2012

Classification CE-717: Machine Learning Sharif University of Technology. M. Soleymani Fall 2012 Classification CE-717: Machine Learning Sharif University of Technology M. Soleymani Fall 2012 Topics Discriminant functions Logistic regression Perceptron Generative models Generative vs. discriminative

More information

Multivariate statistical methods and data mining in particle physics

Multivariate statistical methods and data mining in particle physics Multivariate statistical methods and data mining in particle physics RHUL Physics www.pp.rhul.ac.uk/~cowan Academic Training Lectures CERN 16 19 June, 2008 1 Outline Statement of the problem Some general

More information

BIOSTATS Intermediate Biostatistics Spring 2017 Exam 2 (Units 3, 4 & 5) Practice Problems SOLUTIONS

BIOSTATS Intermediate Biostatistics Spring 2017 Exam 2 (Units 3, 4 & 5) Practice Problems SOLUTIONS BIOSTATS 640 - Intermediate Biostatistics Spring 2017 Exam 2 (Units 3, 4 & 5) Practice Problems SOLUTIONS Practice Question 1 Both the Binomial and Poisson distributions have been used to model the quantal

More information

Logistic Regression. Machine Learning Fall 2018

Logistic Regression. Machine Learning Fall 2018 Logistic Regression Machine Learning Fall 2018 1 Where are e? We have seen the folloing ideas Linear models Learning as loss minimization Bayesian learning criteria (MAP and MLE estimation) The Naïve Bayes

More information

7/28/15. Review Homework. Overview. Lecture 6: Logistic Regression Analysis

7/28/15. Review Homework. Overview. Lecture 6: Logistic Regression Analysis Lecture 6: Logistic Regression Analysis Christopher S. Hollenbeak, PhD Jane R. Schubart, PhD The Outcomes Research Toolbox Review Homework 2 Overview Logistic regression model conceptually Logistic regression

More information

Support Vector Machines

Support Vector Machines Support Vector Machines Le Song Machine Learning I CSE 6740, Fall 2013 Naïve Bayes classifier Still use Bayes decision rule for classification P y x = P x y P y P x But assume p x y = 1 is fully factorized

More information

Generative Learning. INFO-4604, Applied Machine Learning University of Colorado Boulder. November 29, 2018 Prof. Michael Paul

Generative Learning. INFO-4604, Applied Machine Learning University of Colorado Boulder. November 29, 2018 Prof. Michael Paul Generative Learning INFO-4604, Applied Machine Learning University of Colorado Boulder November 29, 2018 Prof. Michael Paul Generative vs Discriminative The classification algorithms we have seen so far

More information

UNIVERSITY OF MASSACHUSETTS Department of Mathematics and Statistics Applied Statistics Friday, January 15, 2016

UNIVERSITY OF MASSACHUSETTS Department of Mathematics and Statistics Applied Statistics Friday, January 15, 2016 UNIVERSITY OF MASSACHUSETTS Department of Mathematics and Statistics Applied Statistics Friday, January 15, 2016 Work all problems. 60 points are needed to pass at the Masters Level and 75 to pass at the

More information

LDA, QDA, Naive Bayes

LDA, QDA, Naive Bayes LDA, QDA, Naive Bayes Generative Classification Models Marek Petrik 2/16/2017 Last Class Logistic Regression Maximum Likelihood Principle Logistic Regression Predict probability of a class: p(x) Example:

More information

Class Notes: Week 8. Probit versus Logit Link Functions and Count Data

Class Notes: Week 8. Probit versus Logit Link Functions and Count Data Ronald Heck Class Notes: Week 8 1 Class Notes: Week 8 Probit versus Logit Link Functions and Count Data This week we ll take up a couple of issues. The first is working with a probit link function. While

More information

Simple logistic regression

Simple logistic regression Simple logistic regression Biometry 755 Spring 2009 Simple logistic regression p. 1/47 Model assumptions 1. The observed data are independent realizations of a binary response variable Y that follows a

More information

Classification: Linear Discriminant Analysis

Classification: Linear Discriminant Analysis Classification: Linear Discriminant Analysis Discriminant analysis uses sample information about individuals that are known to belong to one of several populations for the purposes of classification. Based

More information

NATIONAL UNIVERSITY OF SINGAPORE EXAMINATION. ST3241 Categorical Data Analysis. (Semester II: ) April/May, 2011 Time Allowed : 2 Hours

NATIONAL UNIVERSITY OF SINGAPORE EXAMINATION. ST3241 Categorical Data Analysis. (Semester II: ) April/May, 2011 Time Allowed : 2 Hours NATIONAL UNIVERSITY OF SINGAPORE EXAMINATION Categorical Data Analysis (Semester II: 2010 2011) April/May, 2011 Time Allowed : 2 Hours Matriculation No: Seat No: Grade Table Question 1 2 3 4 5 6 Full marks

More information

ST3241 Categorical Data Analysis I Multicategory Logit Models. Logit Models For Nominal Responses

ST3241 Categorical Data Analysis I Multicategory Logit Models. Logit Models For Nominal Responses ST3241 Categorical Data Analysis I Multicategory Logit Models Logit Models For Nominal Responses 1 Models For Nominal Responses Y is nominal with J categories. Let {π 1,, π J } denote the response probabilities

More information

Sparse Linear Models (10/7/13)

Sparse Linear Models (10/7/13) STA56: Probabilistic machine learning Sparse Linear Models (0/7/) Lecturer: Barbara Engelhardt Scribes: Jiaji Huang, Xin Jiang, Albert Oh Sparsity Sparsity has been a hot topic in statistics and machine

More information

Modern Methods of Statistical Learning sf2935 Lecture 5: Logistic Regression T.K

Modern Methods of Statistical Learning sf2935 Lecture 5: Logistic Regression T.K Lecture 5: Logistic Regression T.K. 10.11.2016 Overview of the Lecture Your Learning Outcomes Discriminative v.s. Generative Odds, Odds Ratio, Logit function, Logistic function Logistic regression definition

More information

Machine Learning Lecture 7

Machine Learning Lecture 7 Course Outline Machine Learning Lecture 7 Fundamentals (2 weeks) Bayes Decision Theory Probability Density Estimation Statistical Learning Theory 23.05.2016 Discriminative Approaches (5 weeks) Linear Discriminant

More information

Classification 1: Linear regression of indicators, linear discriminant analysis

Classification 1: Linear regression of indicators, linear discriminant analysis Classification 1: Linear regression of indicators, linear discriminant analysis Ryan Tibshirani Data Mining: 36-462/36-662 April 2 2013 Optional reading: ISL 4.1, 4.2, 4.4, ESL 4.1 4.3 1 Classification

More information

Bayesian Decision Theory

Bayesian Decision Theory Bayesian Decision Theory Selim Aksoy Department of Computer Engineering Bilkent University saksoy@cs.bilkent.edu.tr CS 551, Fall 2017 CS 551, Fall 2017 c 2017, Selim Aksoy (Bilkent University) 1 / 46 Bayesian

More information

Kernel Logistic Regression and the Import Vector Machine

Kernel Logistic Regression and the Import Vector Machine Kernel Logistic Regression and the Import Vector Machine Ji Zhu and Trevor Hastie Journal of Computational and Graphical Statistics, 2005 Presented by Mingtao Ding Duke University December 8, 2011 Mingtao

More information

Data-analysis and Retrieval Ordinal Classification

Data-analysis and Retrieval Ordinal Classification Data-analysis and Retrieval Ordinal Classification Ad Feelders Universiteit Utrecht Data-analysis and Retrieval 1 / 30 Strongly disagree Ordinal Classification 1 2 3 4 5 0% (0) 10.5% (2) 21.1% (4) 42.1%

More information

STA 4504/5503 Sample Exam 1 Spring 2011 Categorical Data Analysis. 1. Indicate whether each of the following is true (T) or false (F).

STA 4504/5503 Sample Exam 1 Spring 2011 Categorical Data Analysis. 1. Indicate whether each of the following is true (T) or false (F). STA 4504/5503 Sample Exam 1 Spring 2011 Categorical Data Analysis 1. Indicate whether each of the following is true (T) or false (F). (a) T In 2 2 tables, statistical independence is equivalent to a population

More information

Age 55 (x = 1) Age < 55 (x = 0)

Age 55 (x = 1) Age < 55 (x = 0) Logistic Regression with a Single Dichotomous Predictor EXAMPLE: Consider the data in the file CHDcsv Instead of examining the relationship between the continuous variable age and the presence or absence

More information

Logistic Regression. Interpretation of linear regression. Other types of outcomes. 0-1 response variable: Wound infection. Usual linear regression

Logistic Regression. Interpretation of linear regression. Other types of outcomes. 0-1 response variable: Wound infection. Usual linear regression Logistic Regression Usual linear regression (repetition) y i = b 0 + b 1 x 1i + b 2 x 2i + e i, e i N(0,σ 2 ) or: y i N(b 0 + b 1 x 1i + b 2 x 2i,σ 2 ) Example (DGA, p. 336): E(PEmax) = 47.355 + 1.024

More information

Cheng Soon Ong & Christian Walder. Canberra February June 2018

Cheng Soon Ong & Christian Walder. Canberra February June 2018 Cheng Soon Ong & Christian Walder Research Group and College of Engineering and Computer Science Canberra February June 2018 (Many figures from C. M. Bishop, "Pattern Recognition and ") 1of 305 Part VII

More information

Linear Models for Classification

Linear Models for Classification Linear Models for Classification Oliver Schulte - CMPT 726 Bishop PRML Ch. 4 Classification: Hand-written Digit Recognition CHINE INTELLIGENCE, VOL. 24, NO. 24, APRIL 2002 x i = t i = (0, 0, 0, 1, 0, 0,

More information

Logistic Regression. Sargur N. Srihari. University at Buffalo, State University of New York USA

Logistic Regression. Sargur N. Srihari. University at Buffalo, State University of New York USA Logistic Regression Sargur N. University at Buffalo, State University of New York USA Topics in Linear Classification using Probabilistic Discriminative Models Generative vs Discriminative 1. Fixed basis

More information

PubHlth Intermediate Biostatistics Spring 2015 Exam 2 (Units 3, 4 & 5) Study Guide

PubHlth Intermediate Biostatistics Spring 2015 Exam 2 (Units 3, 4 & 5) Study Guide PubHlth 640 - Intermediate Biostatistics Spring 2015 Exam 2 (Units 3, 4 & 5) Study Guide Unit 3 (Discrete Distributions) Take care to know how to do the following! Learning Objective See: 1. Write down

More information

Classification Based on Probability

Classification Based on Probability Logistic Regression These slides were assembled by Byron Boots, with only minor modifications from Eric Eaton s slides and grateful acknowledgement to the many others who made their course materials freely

More information

THE UNIVERSITY OF CHICAGO Graduate School of Business Business 41912, Spring Quarter 2012, Mr. Ruey S. Tsay

THE UNIVERSITY OF CHICAGO Graduate School of Business Business 41912, Spring Quarter 2012, Mr. Ruey S. Tsay THE UNIVERSITY OF CHICAGO Graduate School of Business Business 41912, Spring Quarter 2012, Mr Ruey S Tsay Lecture 9: Discrimination and Classification 1 Basic concept Discrimination is concerned with separating

More information

7. Assumes that there is little or no multicollinearity (however, SPSS will not assess this in the [binary] Logistic Regression procedure).

7. Assumes that there is little or no multicollinearity (however, SPSS will not assess this in the [binary] Logistic Regression procedure). 1 Neuendorf Logistic Regression The Model: Y Assumptions: 1. Metric (interval/ratio) data for 2+ IVs, and dichotomous (binomial; 2-value), categorical/nominal data for a single DV... bear in mind that

More information

You can specify the response in the form of a single variable or in the form of a ratio of two variables denoted events/trials.

You can specify the response in the form of a single variable or in the form of a ratio of two variables denoted events/trials. The GENMOD Procedure MODEL Statement MODEL response = < effects > < /options > ; MODEL events/trials = < effects > < /options > ; You can specify the response in the form of a single variable or in the

More information

Probabilistic modeling. The slides are closely adapted from Subhransu Maji s slides

Probabilistic modeling. The slides are closely adapted from Subhransu Maji s slides Probabilistic modeling The slides are closely adapted from Subhransu Maji s slides Overview So far the models and algorithms you have learned about are relatively disconnected Probabilistic modeling framework

More information

ECE521 Lecture7. Logistic Regression

ECE521 Lecture7. Logistic Regression ECE521 Lecture7 Logistic Regression Outline Review of decision theory Logistic regression A single neuron Multi-class classification 2 Outline Decision theory is conceptually easy and computationally hard

More information

LOGISTIC REGRESSION Joseph M. Hilbe

LOGISTIC REGRESSION Joseph M. Hilbe LOGISTIC REGRESSION Joseph M. Hilbe Arizona State University Logistic regression is the most common method used to model binary response data. When the response is binary, it typically takes the form of

More information

Logistic Regression. Advanced Methods for Data Analysis (36-402/36-608) Spring 2014

Logistic Regression. Advanced Methods for Data Analysis (36-402/36-608) Spring 2014 Logistic Regression Advanced Methods for Data Analysis (36-402/36-608 Spring 204 Classification. Introduction to classification Classification, like regression, is a predictive task, but one in which the

More information

STA 4504/5503 Sample Exam 1 Spring 2011 Categorical Data Analysis. 1. Indicate whether each of the following is true (T) or false (F).

STA 4504/5503 Sample Exam 1 Spring 2011 Categorical Data Analysis. 1. Indicate whether each of the following is true (T) or false (F). STA 4504/5503 Sample Exam 1 Spring 2011 Categorical Data Analysis 1. Indicate whether each of the following is true (T) or false (F). (a) (b) (c) (d) (e) In 2 2 tables, statistical independence is equivalent

More information

8 Nominal and Ordinal Logistic Regression

8 Nominal and Ordinal Logistic Regression 8 Nominal and Ordinal Logistic Regression 8.1 Introduction If the response variable is categorical, with more then two categories, then there are two options for generalized linear models. One relies on

More information

Gaussian discriminant analysis Naive Bayes

Gaussian discriminant analysis Naive Bayes DM825 Introduction to Machine Learning Lecture 7 Gaussian discriminant analysis Marco Chiarandini Department of Mathematics & Computer Science University of Southern Denmark Outline 1. is 2. Multi-variate

More information

Stat 5101 Lecture Notes

Stat 5101 Lecture Notes Stat 5101 Lecture Notes Charles J. Geyer Copyright 1998, 1999, 2000, 2001 by Charles J. Geyer May 7, 2001 ii Stat 5101 (Geyer) Course Notes Contents 1 Random Variables and Change of Variables 1 1.1 Random

More information

Review. Timothy Hanson. Department of Statistics, University of South Carolina. Stat 770: Categorical Data Analysis

Review. Timothy Hanson. Department of Statistics, University of South Carolina. Stat 770: Categorical Data Analysis Review Timothy Hanson Department of Statistics, University of South Carolina Stat 770: Categorical Data Analysis 1 / 22 Chapter 1: background Nominal, ordinal, interval data. Distributions: Poisson, binomial,

More information

Theorems. Least squares regression

Theorems. Least squares regression Theorems In this assignment we are trying to classify AML and ALL samples by use of penalized logistic regression. Before we indulge on the adventure of classification we should first explain the most

More information

Models for Count and Binary Data. Poisson and Logistic GWR Models. 24/07/2008 GWR Workshop 1

Models for Count and Binary Data. Poisson and Logistic GWR Models. 24/07/2008 GWR Workshop 1 Models for Count and Binary Data Poisson and Logistic GWR Models 24/07/2008 GWR Workshop 1 Outline I: Modelling counts Poisson regression II: Modelling binary events Logistic Regression III: Poisson Regression

More information

Consider Table 1 (Note connection to start-stop process).

Consider Table 1 (Note connection to start-stop process). Discrete-Time Data and Models Discretized duration data are still duration data! Consider Table 1 (Note connection to start-stop process). Table 1: Example of Discrete-Time Event History Data Case Event

More information

Class 4: Classification. Quaid Morris February 11 th, 2011 ML4Bio

Class 4: Classification. Quaid Morris February 11 th, 2011 ML4Bio Class 4: Classification Quaid Morris February 11 th, 211 ML4Bio Overview Basic concepts in classification: overfitting, cross-validation, evaluation. Linear Discriminant Analysis and Quadratic Discriminant

More information

R Hints for Chapter 10

R Hints for Chapter 10 R Hints for Chapter 10 The multiple logistic regression model assumes that the success probability p for a binomial random variable depends on independent variables or design variables x 1, x 2,, x k.

More information

Unit 5 Logistic Regression Practice Problems

Unit 5 Logistic Regression Practice Problems Unit 5 Logistic Regression Practice Problems SOLUTIONS R Users Source: Afifi A., Clark VA and May S. Computer Aided Multivariate Analysis, Fourth Edition. Boca Raton: Chapman and Hall, 2004. Exercises

More information

LINEAR CLASSIFICATION, PERCEPTRON, LOGISTIC REGRESSION, SVC, NAÏVE BAYES. Supervised Learning

LINEAR CLASSIFICATION, PERCEPTRON, LOGISTIC REGRESSION, SVC, NAÏVE BAYES. Supervised Learning LINEAR CLASSIFICATION, PERCEPTRON, LOGISTIC REGRESSION, SVC, NAÏVE BAYES Supervised Learning Linear vs non linear classifiers In K-NN we saw an example of a non-linear classifier: the decision boundary

More information

Hypothesis Testing, Power, Sample Size and Confidence Intervals (Part 2)

Hypothesis Testing, Power, Sample Size and Confidence Intervals (Part 2) Hypothesis Testing, Power, Sample Size and Confidence Intervals (Part 2) B.H. Robbins Scholars Series June 23, 2010 1 / 29 Outline Z-test χ 2 -test Confidence Interval Sample size and power Relative effect

More information

Statistics in medicine

Statistics in medicine Statistics in medicine Lecture 4: and multivariable regression Fatma Shebl, MD, MS, MPH, PhD Assistant Professor Chronic Disease Epidemiology Department Yale School of Public Health Fatma.shebl@yale.edu

More information

Chapter 10 Logistic Regression

Chapter 10 Logistic Regression Chapter 10 Logistic Regression Data Mining for Business Intelligence Shmueli, Patel & Bruce Galit Shmueli and Peter Bruce 2010 Logistic Regression Extends idea of linear regression to situation where outcome

More information

The exam is closed book, closed notes except your one-page (two sides) or two-page (one side) crib sheet.

The exam is closed book, closed notes except your one-page (two sides) or two-page (one side) crib sheet. CS 189 Spring 013 Introduction to Machine Learning Final You have 3 hours for the exam. The exam is closed book, closed notes except your one-page (two sides) or two-page (one side) crib sheet. Please

More information

Machine Learning, Midterm Exam: Spring 2009 SOLUTION

Machine Learning, Midterm Exam: Spring 2009 SOLUTION 10-601 Machine Learning, Midterm Exam: Spring 2009 SOLUTION March 4, 2009 Please put your name at the top of the table below. If you need more room to work out your answer to a question, use the back of

More information

Lecture 2. Judging the Performance of Classifiers. Nitin R. Patel

Lecture 2. Judging the Performance of Classifiers. Nitin R. Patel Lecture 2 Judging the Performance of Classifiers Nitin R. Patel 1 In this note we will examine the question of how to udge the usefulness of a classifier and how to compare different classifiers. Not only

More information

Binary Logistic Regression

Binary Logistic Regression The coefficients of the multiple regression model are estimated using sample data with k independent variables Estimated (or predicted) value of Y Estimated intercept Estimated slope coefficients Ŷ = b

More information

Multinomial Logistic Regression Models

Multinomial Logistic Regression Models Stat 544, Lecture 19 1 Multinomial Logistic Regression Models Polytomous responses. Logistic regression can be extended to handle responses that are polytomous, i.e. taking r>2 categories. (Note: The word

More information

CS 340 Lec. 16: Logistic Regression

CS 340 Lec. 16: Logistic Regression CS 34 Lec. 6: Logistic Regression AD March AD ) March / 6 Introduction Assume you are given some training data { x i, y i } i= where xi R d and y i can take C different values. Given an input test data

More information

Non-Bayesian Classifiers Part II: Linear Discriminants and Support Vector Machines

Non-Bayesian Classifiers Part II: Linear Discriminants and Support Vector Machines Non-Bayesian Classifiers Part II: Linear Discriminants and Support Vector Machines Selim Aksoy Department of Computer Engineering Bilkent University saksoy@cs.bilkent.edu.tr CS 551, Fall 2018 CS 551, Fall

More information

Randomized Decision Trees

Randomized Decision Trees Randomized Decision Trees compiled by Alvin Wan from Professor Jitendra Malik s lecture Discrete Variables First, let us consider some terminology. We have primarily been dealing with real-valued data,

More information

ECE521 week 3: 23/26 January 2017

ECE521 week 3: 23/26 January 2017 ECE521 week 3: 23/26 January 2017 Outline Probabilistic interpretation of linear regression - Maximum likelihood estimation (MLE) - Maximum a posteriori (MAP) estimation Bias-variance trade-off Linear

More information

Stat 587: Key points and formulae Week 15

Stat 587: Key points and formulae Week 15 Odds ratios to compare two proportions: Difference, p 1 p 2, has issues when applied to many populations Vit. C: P[cold Placebo] = 0.82, P[cold Vit. C] = 0.74, Estimated diff. is 8% What if a year or place

More information

Logistic Regression. Continued Psy 524 Ainsworth

Logistic Regression. Continued Psy 524 Ainsworth Logistic Regression Continued Psy 524 Ainsworth Equations Regression Equation Y e = 1 + A+ B X + B X + B X 1 1 2 2 3 3 i A+ B X + B X + B X e 1 1 2 2 3 3 Equations The linear part of the logistic regression

More information

Unit 9: Inferences for Proportions and Count Data

Unit 9: Inferences for Proportions and Count Data Unit 9: Inferences for Proportions and Count Data Statistics 571: Statistical Methods Ramón V. León 12/15/2008 Unit 9 - Stat 571 - Ramón V. León 1 Large Sample Confidence Interval for Proportion ( pˆ p)

More information

Classification Methods II: Linear and Quadratic Discrimminant Analysis

Classification Methods II: Linear and Quadratic Discrimminant Analysis Classification Methods II: Linear and Quadratic Discrimminant Analysis Rebecca C. Steorts, Duke University STA 325, Chapter 4 ISL Agenda Linear Discrimminant Analysis (LDA) Classification Recall that linear

More information

Generalized Linear Models for Non-Normal Data

Generalized Linear Models for Non-Normal Data Generalized Linear Models for Non-Normal Data Today s Class: 3 parts of a generalized model Models for binary outcomes Complications for generalized multivariate or multilevel models SPLH 861: Lecture

More information