Using the estimated penetrances to determine the range of the underlying genetic model in casecontrol
|
|
- Agatha Barker
- 5 years ago
- Views:
Transcription
1 Georgetown Unversty From the SelectedWorks of Mark J Meyer 8 Usng the estmated penetrances to determne the range of the underlyng genetc model n casecontrol desgn Mark J Meyer Neal Jeffres Gang Zheng Avalable at:
2 Usng the estmated penetrances to determne the range of the underlyng genetc model n case-control desgn Mark Meyer, Neal Jeffres, Gang Zheng* Offce of Bostatstcs Research, Natonal Heart, Lung and Blood Insttute, 67 Rockledge Drve, MSC 793, Bethesda, MD , USA *Correspondng author Emal addresses: MM: meyerm@nhlb.nh.gov NJ: nealjeff@nhlb.nh.gov GZ: zhengg@nhlb.nh.gov
3 Abstract It s well known that the penetrance cannot be estmated usng the retrospectve casecontrol samples wthout makng addtonal assumptons. In the lterature the estmaton of the penetrance s based on the assumptons that ether the dsease s rare or the dsease prevalence s known. We propose an alternatve approach to estmate the penetrance by assumng an underlyng genetc model even though t s unknown. Wth ths assumpton, we can obtan the pont estmates of the penetrances as functons of the genetc model, from whch the range of underlyng genetc models can be determned. We examne the performance of our results under varous genetc models usng smulaton studes and the case-control dataset of GAW6. Background Penetrance s a useful parameter n genetc assocaton studes. The penetrance s defned as the probablty of havng a dsease gven one of the three genotypes for a dallelc marker. Three penetrances are used n the lterature, each correspondng to one genotype. Varous underlyng genetc models are also defned usng the penetrances. In case-control assocaton studes, cases and controls are retrospectvely sampled from the study populatons. It s known that the penetrances cannot be estmated usng the retrospectve case-control samples unless some addtonal assumptons are made. In the lterature, one often assumes that the dsease s rare or the dsease prevalence s known. Then, under these assumptons, the penetrances can be estmated usng the retrospectve case-control samples. We propose an alternatve approach by assumng an underlyng genetc model for a SNP wth assocaton the dsease, even though the true genetc model s
4 unknown. Under ths assumpton we can wrte the penetrances as functons of odds ratos and the underlyng genetc model. Thus, the penetrances can be estmated wthout assumng the rare dsease or the known dsease prevalence. Because the penetrances are functons of the specfed underlyng genetc model, usng the estmates of penetrances we could determne the range of underlyng genetc models. We examne the performance of our results under varous possble genetc models usng smulaton studes and case-control data from GAW6. Methods Notaton Denote the alleles for the dallelc marker (SNP) of nterest as A and B and the three genotypes as G = AA, G = AB, and G = BB. The penetrance s then gven by f = Pr( dsease G ), =,,. The genotype counts for ( G, G, G ) n cases are denoted by ( r, r, r ) and n controls by ( s, s, s ). The odds rato OR s the rato of G relatve to G gven the dsease status, whch can be wrtten as OR = f f ) /{ f ( f )},,. Assume ( = that the genetc model s specfed by f = x) f + xf, x (,). Then the followng equatons can be obtaned: ( f x + xor OR = and, =,. ( x)( OR )( OR ) = OR f f f + f OR Estmatng penetrances under the specfed genetc model From the prevous secton, the penetrances are wrtten as functons of the two 3
5 odds ratos. Thus, denote f x) = h ( OR, OR x), for,,. Then the pont ( = estmate for a penetrance s gven by fˆ ( ) ( ˆ, ˆ x = h OR OR x), where O Rˆ = r s /( r ) and O Rˆ = r s /( r ) are based on the observed case-control data s for that SNP. s Usng the estmates to determne the underlyng genetc model Note that the estmates of penetrances, f ˆ ( x ), as functons of x should be between and. However, f ˆ ( x ) are not necessary between and for any x n (,). Therefore, we can determne the range of x n (,) by restrctng f ˆ ( x ) to be between and. The reason that ths approach could work s that, when one of alleles has hgher rsk,.e., f < f < f, OR > OR >, we have f x OR OR = ( x) ( OR )( OR > ) f f f f OR and = = > ( ). x f x x f + f OR Thus, a sngle nterval, x ( a, b), can be obtaned wth whch the three penetrances are between and. Then we expect the nterval (a,b) would cover the true underlyng genetc model x. Numercal Results Smulaton studes We conduct smulaton studes to examne the performance of the above results under the null and alternatve hypotheses. In the smulatons, we specfy the mnor allele frequency (MAF) p =.,.3, and.5, the dsease prevalence k =., genotype relatve rsks (GRRs) λ = f / f and λ = f / f satsfyng 4
6 λ = x + xλ for some x=.5,.5, and.75. We assume 5 cases and 5 controls are used and λ =.. For each replcate, whether or not the nterval (a,b) covers the true value of x s determned and the coverage of the nterval s defned as the percentage of the replcates that the nterval covers the true value of x. The results are reported n Table based on, replcates. The results n Table show that under the null hypothess ( λ = ), the coverage s about % regardless of the MAF and true value of x, whle under the alternatve hypothess ( λ = ), the coverage ncreases to above 5% when MAF s small (p =.) and the true value of x s small or large to above 95% when the true value of x s around the addtve model (x =.5) for the moderate MAF. The smulaton results ndcate the proposed approach provde some nsght nto the possble genetc model underlyng the data. Applcatons The above method s also appled to the sx assocated SNPs reported n Problem of GAW6. So the ranges of possble genetc models for these SNPs can be obtaned. The sx SNPs are gven n Table along wth the genes that they belong to and the chromosome numbers. These SNPs were reported n Plenge et al. (5) as lnked to RA or selected from the canddate-gene studes. Our approach cannot be appled to the last SNP n Table because ts x may be outsde of the range (,). Ths happens when the true genetc model does not belong to the genetc models between the recessve and domnant models. One such example s the overdomnant model whose x s ether less than or greater than. The ntervals for the underlyng genetc models for the other four SNPs are reported n Table (last column). The plots of the three estmates of the penetrances are gven 5
7 n Fgure for the frst four SNPs. Concluson and Dscusson We studed how to nfer possble underlyng genetc model usng the estmated penetrance usng case-control data. No other approaches seem to be avalable to provde a range of possble genetc model. Our usefulness of our results were demonstrated by the smulaton studes and were llustrated by applyng the results to GAW6 dataset. We would lke to contnue ths research to study how the dentfed range of genetc models can be used to mprove power for ntal genome-wde assocaton studes compared to usng MAX of Fredln et al. (), Zheng et al. (7), and L et al. (8). References Fredln et al. (). Trend tests for case-control studes of genetc markers: Power, sample sze and robustness. Hum. Hered. 53, L et al. (8). MAX-rank: a smple and robust genome-wde scan for case-control assocaton studes. Hum. Genet. 3, Plenge et al. (8). TRAF-C5 as a rsk locus for rheumatod arthrts - a genomewde study. NEJM 357, Zheng et al. (7). Robust ranks of true assocatons n genome-wde case-control assocaton studes. BMC Proc. (Suppl ), S65. 6
8 Table : Smulaton of the coverage of the true underlyng genetc model based on, replcates by restrctng the estmated penetrances between and under the null ( λ = ) and alternatve ( λ = ) hypotheses. Coverage MAF True x λ = λ =..5.% 54.8%.5.8% 77.6%.5.6% 73.%.75.4% 6.7%.95.3% 53.%.3.5.6% 66.%.5.% 95.8%.5.% 93.9% % 76.% % 55.% % 63.4%.5 9.3% 9.6%.5 9.7% 98.3%.75.% 83.9% % 56.4% 7
9 Table : The sx SNPs selected from Problem of GAW6. SNP ID Genes Chromosome Model nterval rs MHC 6 (.3,.94) rs4766 PTPN (.57,.78) rs STAT4 (.8,.) rs66 TNFRSFb (.57,.6) rs73838 SLCA4 5 (.46,.53) rs48696 DLG5 NA Fgure : Plots of the estmates of the three penetrances over all possble genetc models wth x n (,). 8
10 9
x = , so that calculated
Stat 4, secton Sngle Factor ANOVA notes by Tm Plachowsk n chapter 8 we conducted hypothess tests n whch we compared a sngle sample s mean or proporton to some hypotheszed value Chapter 9 expanded ths to
More informationSimulated Power of the Discrete Cramér-von Mises Goodness-of-Fit Tests
Smulated of the Cramér-von Mses Goodness-of-Ft Tests Steele, M., Chaselng, J. and 3 Hurst, C. School of Mathematcal and Physcal Scences, James Cook Unversty, Australan School of Envronmental Studes, Grffth
More informationPsychology 282 Lecture #24 Outline Regression Diagnostics: Outliers
Psychology 282 Lecture #24 Outlne Regresson Dagnostcs: Outlers In an earler lecture we studed the statstcal assumptons underlyng the regresson model, ncludng the followng ponts: Formal statement of assumptons.
More informationComparison of Regression Lines
STATGRAPHICS Rev. 9/13/2013 Comparson of Regresson Lnes Summary... 1 Data Input... 3 Analyss Summary... 4 Plot of Ftted Model... 6 Condtonal Sums of Squares... 6 Analyss Optons... 7 Forecasts... 8 Confdence
More informationChecking Pairwise Relationships. Lecture 19 Biostatistics 666
Checkng Parwse Relatonshps Lecture 19 Bostatstcs 666 Last Lecture: Markov Model for Multpont Analyss X X X 1 3 X M P X 1 I P X I P X 3 I P X M I 1 3 M I 1 I I 3 I M P I I P I 3 I P... 1 IBD states along
More informationStatistics for Economics & Business
Statstcs for Economcs & Busness Smple Lnear Regresson Learnng Objectves In ths chapter, you learn: How to use regresson analyss to predct the value of a dependent varable based on an ndependent varable
More informationNEW ASTERISKS IN VERSION 2.0 OF ACTIVEPI
NEW ASTERISKS IN VERSION 2.0 OF ACTIVEPI ASTERISK ADDED ON LESSON PAGE 3-1 after the second sentence under Clncal Trals Effcacy versus Effectveness versus Effcency The apprasal of a new or exstng healthcare
More informationDepartment of Quantitative Methods & Information Systems. Time Series and Their Components QMIS 320. Chapter 6
Department of Quanttatve Methods & Informaton Systems Tme Seres and Ther Components QMIS 30 Chapter 6 Fall 00 Dr. Mohammad Zanal These sldes were modfed from ther orgnal source for educatonal purpose only.
More informationECONOMICS 351*-A Mid-Term Exam -- Fall Term 2000 Page 1 of 13 pages. QUEEN'S UNIVERSITY AT KINGSTON Department of Economics
ECOOMICS 35*-A Md-Term Exam -- Fall Term 000 Page of 3 pages QUEE'S UIVERSITY AT KIGSTO Department of Economcs ECOOMICS 35* - Secton A Introductory Econometrcs Fall Term 000 MID-TERM EAM ASWERS MG Abbott
More informationEEE 241: Linear Systems
EEE : Lnear Systems Summary #: Backpropagaton BACKPROPAGATION The perceptron rule as well as the Wdrow Hoff learnng were desgned to tran sngle layer networks. They suffer from the same dsadvantage: they
More informationJoint Statistical Meetings - Biopharmaceutical Section
Iteratve Ch-Square Test for Equvalence of Multple Treatment Groups Te-Hua Ng*, U.S. Food and Drug Admnstraton 1401 Rockvlle Pke, #200S, HFM-217, Rockvlle, MD 20852-1448 Key Words: Equvalence Testng; Actve
More informationPolynomial Regression Models
LINEAR REGRESSION ANALYSIS MODULE XII Lecture - 6 Polynomal Regresson Models Dr. Shalabh Department of Mathematcs and Statstcs Indan Insttute of Technology Kanpur Test of sgnfcance To test the sgnfcance
More informationCopyright 2017 by Taylor Enterprises, Inc., All Rights Reserved. Adjusted Control Limits for P Charts. Dr. Wayne A. Taylor
Taylor Enterprses, Inc. Control Lmts for P Charts Copyrght 2017 by Taylor Enterprses, Inc., All Rghts Reserved. Control Lmts for P Charts Dr. Wayne A. Taylor Abstract: P charts are used for count data
More informationDr. Shalabh Department of Mathematics and Statistics Indian Institute of Technology Kanpur
Analyss of Varance and Desgn of Experment-I MODULE VIII LECTURE - 34 ANALYSIS OF VARIANCE IN RANDOM-EFFECTS MODEL AND MIXED-EFFECTS EFFECTS MODEL Dr Shalabh Department of Mathematcs and Statstcs Indan
More informationComparison of the Population Variance Estimators. of 2-Parameter Exponential Distribution Based on. Multiple Criteria Decision Making Method
Appled Mathematcal Scences, Vol. 7, 0, no. 47, 07-0 HIARI Ltd, www.m-hkar.com Comparson of the Populaton Varance Estmators of -Parameter Exponental Dstrbuton Based on Multple Crtera Decson Makng Method
More informationCredit Card Pricing and Impact of Adverse Selection
Credt Card Prcng and Impact of Adverse Selecton Bo Huang and Lyn C. Thomas Unversty of Southampton Contents Background Aucton model of credt card solctaton - Errors n probablty of beng Good - Errors n
More informationLinear Regression Analysis: Terminology and Notation
ECON 35* -- Secton : Basc Concepts of Regresson Analyss (Page ) Lnear Regresson Analyss: Termnology and Notaton Consder the generc verson of the smple (two-varable) lnear regresson model. It s represented
More informationChapter 13: Multiple Regression
Chapter 13: Multple Regresson 13.1 Developng the multple-regresson Model The general model can be descrbed as: It smplfes for two ndependent varables: The sample ft parameter b 0, b 1, and b are used to
More informationEcon107 Applied Econometrics Topic 3: Classical Model (Studenmund, Chapter 4)
I. Classcal Assumptons Econ7 Appled Econometrcs Topc 3: Classcal Model (Studenmund, Chapter 4) We have defned OLS and studed some algebrac propertes of OLS. In ths topc we wll study statstcal propertes
More informationConvexity preserving interpolation by splines of arbitrary degree
Computer Scence Journal of Moldova, vol.18, no.1(52), 2010 Convexty preservng nterpolaton by splnes of arbtrary degree Igor Verlan Abstract In the present paper an algorthm of C 2 nterpolaton of dscrete
More informationCOMPARISON OF SOME RELIABILITY CHARACTERISTICS BETWEEN REDUNDANT SYSTEMS REQUIRING SUPPORTING UNITS FOR THEIR OPERATIONS
Avalable onlne at http://sck.org J. Math. Comput. Sc. 3 (3), No., 6-3 ISSN: 97-537 COMPARISON OF SOME RELIABILITY CHARACTERISTICS BETWEEN REDUNDANT SYSTEMS REQUIRING SUPPORTING UNITS FOR THEIR OPERATIONS
More informationStatistics II Final Exam 26/6/18
Statstcs II Fnal Exam 26/6/18 Academc Year 2017/18 Solutons Exam duraton: 2 h 30 mn 1. (3 ponts) A town hall s conductng a study to determne the amount of leftover food produced by the restaurants n the
More informationStatistics for Business and Economics
Statstcs for Busness and Economcs Chapter 11 Smple Regresson Copyrght 010 Pearson Educaton, Inc. Publshng as Prentce Hall Ch. 11-1 11.1 Overvew of Lnear Models n An equaton can be ft to show the best lnear
More informationLecture 6: Introduction to Linear Regression
Lecture 6: Introducton to Lnear Regresson An Manchakul amancha@jhsph.edu 24 Aprl 27 Lnear regresson: man dea Lnear regresson can be used to study an outcome as a lnear functon of a predctor Example: 6
More informationNumerical Solution of Ordinary Differential Equations
Numercal Methods (CENG 00) CHAPTER-VI Numercal Soluton of Ordnar Dfferental Equatons 6 Introducton Dfferental equatons are equatons composed of an unknown functon and ts dervatves The followng are examples
More informationA Robust Method for Calculating the Correlation Coefficient
A Robust Method for Calculatng the Correlaton Coeffcent E.B. Nven and C. V. Deutsch Relatonshps between prmary and secondary data are frequently quantfed usng the correlaton coeffcent; however, the tradtonal
More informationDepartment of Statistics University of Toronto STA305H1S / 1004 HS Design and Analysis of Experiments Term Test - Winter Solution
Department of Statstcs Unversty of Toronto STA35HS / HS Desgn and Analyss of Experments Term Test - Wnter - Soluton February, Last Name: Frst Name: Student Number: Instructons: Tme: hours. Ads: a non-programmable
More informationOne-sided finite-difference approximations suitable for use with Richardson extrapolation
Journal of Computatonal Physcs 219 (2006) 13 20 Short note One-sded fnte-dfference approxmatons sutable for use wth Rchardson extrapolaton Kumar Rahul, S.N. Bhattacharyya * Department of Mechancal Engneerng,
More informationa. (All your answers should be in the letter!
Econ 301 Blkent Unversty Taskn Econometrcs Department of Economcs Md Term Exam I November 8, 015 Name For each hypothess testng n the exam complete the followng steps: Indcate the test statstc, ts crtcal
More informationRecall that quantitative genetics is based on the extension of Mendelian principles to polygenic traits.
BIOSTT/STT551, Statstcal enetcs II: Quanttatve Trats Wnter 004 Sources of varaton for multlocus trats and Handout Readng: Chapter 5 and 6. Extensons to Multlocus trats Recall that quanttatve genetcs s
More informationDurban Watson for Testing the Lack-of-Fit of Polynomial Regression Models without Replications
Durban Watson for Testng the Lack-of-Ft of Polynomal Regresson Models wthout Replcatons Ruba A. Alyaf, Maha A. Omar, Abdullah A. Al-Shha ralyaf@ksu.edu.sa, maomar@ksu.edu.sa, aalshha@ksu.edu.sa Department
More informationBOOTSTRAP METHOD FOR TESTING OF EQUALITY OF SEVERAL MEANS. M. Krishna Reddy, B. Naveen Kumar and Y. Ramu
BOOTSTRAP METHOD FOR TESTING OF EQUALITY OF SEVERAL MEANS M. Krshna Reddy, B. Naveen Kumar and Y. Ramu Department of Statstcs, Osmana Unversty, Hyderabad -500 007, Inda. nanbyrozu@gmal.com, ramu0@gmal.com
More informationNon-Mixture Cure Model for Interval Censored Data: Simulation Study ABSTRACT
Malaysan Journal of Mathematcal Scences 8(S): 37-44 (2014) Specal Issue: Internatonal Conference on Mathematcal Scences and Statstcs 2013 (ICMSS2013) MALAYSIAN JOURNAL OF MATHEMATICAL SCIENCES Journal
More informationUsing T.O.M to Estimate Parameter of distributions that have not Single Exponential Family
IOSR Journal of Mathematcs IOSR-JM) ISSN: 2278-5728. Volume 3, Issue 3 Sep-Oct. 202), PP 44-48 www.osrjournals.org Usng T.O.M to Estmate Parameter of dstrbutons that have not Sngle Exponental Famly Jubran
More informationAppendix for Causal Interaction in Factorial Experiments: Application to Conjoint Analysis
A Appendx for Causal Interacton n Factoral Experments: Applcaton to Conjont Analyss Mathematcal Appendx: Proofs of Theorems A. Lemmas Below, we descrbe all the lemmas, whch are used to prove the man theorems
More informationStatistical tables are provided Two Hours UNIVERSITY OF MANCHESTER. Date: Wednesday 4 th June 2008 Time: 1400 to 1600
Statstcal tables are provded Two Hours UNIVERSITY OF MNCHESTER Medcal Statstcs Date: Wednesday 4 th June 008 Tme: 1400 to 1600 MT3807 Electronc calculators may be used provded that they conform to Unversty
More informationLINEAR REGRESSION ANALYSIS. MODULE IX Lecture Multicollinearity
LINEAR REGRESSION ANALYSIS MODULE IX Lecture - 31 Multcollnearty Dr. Shalabh Department of Mathematcs and Statstcs Indan Insttute of Technology Kanpur 6. Rdge regresson The OLSE s the best lnear unbased
More informationExponential Type Product Estimator for Finite Population Mean with Information on Auxiliary Attribute
Avalable at http://pvamu.edu/aam Appl. Appl. Math. ISSN: 193-9466 Vol. 10, Issue 1 (June 015), pp. 106-113 Applcatons and Appled Mathematcs: An Internatonal Journal (AAM) Exponental Tpe Product Estmator
More informationChapter 5. Solution of System of Linear Equations. Module No. 6. Solution of Inconsistent and Ill Conditioned Systems
Numercal Analyss by Dr. Anta Pal Assstant Professor Department of Mathematcs Natonal Insttute of Technology Durgapur Durgapur-713209 emal: anta.bue@gmal.com 1 . Chapter 5 Soluton of System of Lnear Equatons
More informationCOMPLEX NUMBERS AND QUADRATIC EQUATIONS
COMPLEX NUMBERS AND QUADRATIC EQUATIONS INTRODUCTION We know that x 0 for all x R e the square of a real number (whether postve, negatve or ero) s non-negatve Hence the equatons x, x, x + 7 0 etc are not
More informationNegative Binomial Regression
STATGRAPHICS Rev. 9/16/2013 Negatve Bnomal Regresson Summary... 1 Data Input... 3 Statstcal Model... 3 Analyss Summary... 4 Analyss Optons... 7 Plot of Ftted Model... 8 Observed Versus Predcted... 10 Predctons...
More informationIII. Econometric Methodology Regression Analysis
Page Econ07 Appled Econometrcs Topc : An Overvew of Regresson Analyss (Studenmund, Chapter ) I. The Nature and Scope of Econometrcs. Lot s of defntons of econometrcs. Nobel Prze Commttee Paul Samuelson,
More informationThe optimal delay of the second test is therefore approximately 210 hours earlier than =2.
THE IEC 61508 FORMULAS 223 The optmal delay of the second test s therefore approxmately 210 hours earler than =2. 8.4 The IEC 61508 Formulas IEC 61508-6 provdes approxmaton formulas for the PF for smple
More informationFormulas for the Determinant
page 224 224 CHAPTER 3 Determnants e t te t e 2t 38 A = e t 2te t e 2t e t te t 2e 2t 39 If 123 A = 345, 456 compute the matrx product A adj(a) What can you conclude about det(a)? For Problems 40 43, use
More informationModule 3 LOSSY IMAGE COMPRESSION SYSTEMS. Version 2 ECE IIT, Kharagpur
Module 3 LOSSY IMAGE COMPRESSION SYSTEMS Verson ECE IIT, Kharagpur Lesson 6 Theory of Quantzaton Verson ECE IIT, Kharagpur Instructonal Objectves At the end of ths lesson, the students should be able to:
More informationSTATISTICS QUESTIONS. Step by Step Solutions.
STATISTICS QUESTIONS Step by Step Solutons www.mathcracker.com 9//016 Problem 1: A researcher s nterested n the effects of famly sze on delnquency for a group of offenders and examnes famles wth one to
More informationIntroduction to Vapor/Liquid Equilibrium, part 2. Raoult s Law:
CE304, Sprng 2004 Lecture 4 Introducton to Vapor/Lqud Equlbrum, part 2 Raoult s Law: The smplest model that allows us do VLE calculatons s obtaned when we assume that the vapor phase s an deal gas, and
More informationCopyright 2017 by Taylor Enterprises, Inc., All Rights Reserved. Adjusted Control Limits for U Charts. Dr. Wayne A. Taylor
Taylor Enterprses, Inc. Adjusted Control Lmts for U Charts Copyrght 207 by Taylor Enterprses, Inc., All Rghts Reserved. Adjusted Control Lmts for U Charts Dr. Wayne A. Taylor Abstract: U charts are used
More informationStatistical Hypothesis Testing for Returns to Scale Using Data Envelopment Analysis
Statstcal Hypothess Testng for Returns to Scale Usng Data nvelopment nalyss M. ukushge a and I. Myara b a Graduate School of conomcs, Osaka Unversty, Osaka 560-0043, apan (mfuku@econ.osaka-u.ac.p) b Graduate
More informationTitle: Bounds and normalization of the composite linkage disequilibrium coefficient.
Ttle: ounds and normalzaton of the composte lnkage dsequlbrum coeffcent. (Genetc Epdemology 004 7:5-57 uthor: Dmtr V. Zaykn * * GlaxoSmthKlne Inc., Research Trangle Park, NC Contact detals: Dmtr Zaykn
More informationSolution Thermodynamics
Soluton hermodynamcs usng Wagner Notaton by Stanley. Howard Department of aterals and etallurgcal Engneerng South Dakota School of nes and echnology Rapd Cty, SD 57701 January 7, 001 Soluton hermodynamcs
More informationChapter 8 Indicator Variables
Chapter 8 Indcator Varables In general, e explanatory varables n any regresson analyss are assumed to be quanttatve n nature. For example, e varables lke temperature, dstance, age etc. are quanttatve n
More informationLECTURE 9 CANONICAL CORRELATION ANALYSIS
LECURE 9 CANONICAL CORRELAION ANALYSIS Introducton he concept of canoncal correlaton arses when we want to quantfy the assocatons between two sets of varables. For example, suppose that the frst set of
More informationMarkov Chain Monte Carlo Lecture 6
where (x 1,..., x N ) X N, N s called the populaton sze, f(x) f (x) for at least one {1, 2,..., N}, and those dfferent from f(x) are called the tral dstrbutons n terms of mportance samplng. Dfferent ways
More informationStatistics for Managers Using Microsoft Excel/SPSS Chapter 13 The Simple Linear Regression Model and Correlation
Statstcs for Managers Usng Mcrosoft Excel/SPSS Chapter 13 The Smple Lnear Regresson Model and Correlaton 1999 Prentce-Hall, Inc. Chap. 13-1 Chapter Topcs Types of Regresson Models Determnng the Smple Lnear
More informationA note on regression estimation with unknown population size
Statstcs Publcatons Statstcs 6-016 A note on regresson estmaton wth unknown populaton sze Mchael A. Hdroglou Statstcs Canada Jae Kwang Km Iowa State Unversty jkm@astate.edu Chrstan Olver Nambeu Statstcs
More informationImprovement in Estimating the Population Mean Using Exponential Estimator in Simple Random Sampling
Bulletn of Statstcs & Economcs Autumn 009; Volume 3; Number A09; Bull. Stat. Econ. ISSN 0973-70; Copyrght 009 by BSE CESER Improvement n Estmatng the Populaton Mean Usng Eponental Estmator n Smple Random
More informationFREQUENCY DISTRIBUTIONS Page 1 of The idea of a frequency distribution for sets of observations will be introduced,
FREQUENCY DISTRIBUTIONS Page 1 of 6 I. Introducton 1. The dea of a frequency dstrbuton for sets of observatons wll be ntroduced, together wth some of the mechancs for constructng dstrbutons of data. Then
More informationEconomics 130. Lecture 4 Simple Linear Regression Continued
Economcs 130 Lecture 4 Contnued Readngs for Week 4 Text, Chapter and 3. We contnue wth addressng our second ssue + add n how we evaluate these relatonshps: Where do we get data to do ths analyss? How do
More informationResource Allocation and Decision Analysis (ECON 8010) Spring 2014 Foundations of Regression Analysis
Resource Allocaton and Decson Analss (ECON 800) Sprng 04 Foundatons of Regresson Analss Readng: Regresson Analss (ECON 800 Coursepak, Page 3) Defntons and Concepts: Regresson Analss statstcal technques
More information1. Inference on Regression Parameters a. Finding Mean, s.d and covariance amongst estimates. 2. Confidence Intervals and Working Hotelling Bands
Content. Inference on Regresson Parameters a. Fndng Mean, s.d and covarance amongst estmates.. Confdence Intervals and Workng Hotellng Bands 3. Cochran s Theorem 4. General Lnear Testng 5. Measures of
More informationInductance Calculation for Conductors of Arbitrary Shape
CRYO/02/028 Aprl 5, 2002 Inductance Calculaton for Conductors of Arbtrary Shape L. Bottura Dstrbuton: Internal Summary In ths note we descrbe a method for the numercal calculaton of nductances among conductors
More informationA Novel Feistel Cipher Involving a Bunch of Keys supplemented with Modular Arithmetic Addition
(IJACSA) Internatonal Journal of Advanced Computer Scence Applcatons, A Novel Festel Cpher Involvng a Bunch of Keys supplemented wth Modular Arthmetc Addton Dr. V.U.K Sastry Dean R&D, Department of Computer
More informationTemperature. Chapter Heat Engine
Chapter 3 Temperature In prevous chapters of these notes we ntroduced the Prncple of Maxmum ntropy as a technque for estmatng probablty dstrbutons consstent wth constrants. In Chapter 9 we dscussed the
More informationStructure and Drive Paul A. Jensen Copyright July 20, 2003
Structure and Drve Paul A. Jensen Copyrght July 20, 2003 A system s made up of several operatons wth flow passng between them. The structure of the system descrbes the flow paths from nputs to outputs.
More informationThe Multiple Classical Linear Regression Model (CLRM): Specification and Assumptions. 1. Introduction
ECONOMICS 5* -- NOTE (Summary) ECON 5* -- NOTE The Multple Classcal Lnear Regresson Model (CLRM): Specfcaton and Assumptons. Introducton CLRM stands for the Classcal Lnear Regresson Model. The CLRM s also
More informationAP Physics 1 & 2 Summer Assignment
AP Physcs 1 & 2 Summer Assgnment AP Physcs 1 requres an exceptonal profcency n algebra, trgonometry, and geometry. It was desgned by a select group of college professors and hgh school scence teachers
More informationChapter 9: Statistical Inference and the Relationship between Two Variables
Chapter 9: Statstcal Inference and the Relatonshp between Two Varables Key Words The Regresson Model The Sample Regresson Equaton The Pearson Correlaton Coeffcent Learnng Outcomes After studyng ths chapter,
More informationBayesian predictive Configural Frequency Analysis
Psychologcal Test and Assessment Modelng, Volume 54, 2012 (3), 285-292 Bayesan predctve Confgural Frequency Analyss Eduardo Gutérrez-Peña 1 Abstract Confgural Frequency Analyss s a method for cell-wse
More informationELASTIC WAVE PROPAGATION IN A CONTINUOUS MEDIUM
ELASTIC WAVE PROPAGATION IN A CONTINUOUS MEDIUM An elastc wave s a deformaton of the body that travels throughout the body n all drectons. We can examne the deformaton over a perod of tme by fxng our look
More informationUSE OF DOUBLE SAMPLING SCHEME IN ESTIMATING THE MEAN OF STRATIFIED POPULATION UNDER NON-RESPONSE
STATISTICA, anno LXXV, n. 4, 015 USE OF DOUBLE SAMPLING SCHEME IN ESTIMATING THE MEAN OF STRATIFIED POPULATION UNDER NON-RESPONSE Manoj K. Chaudhary 1 Department of Statstcs, Banaras Hndu Unversty, Varanas,
More informationInterval Estimation in the Classical Normal Linear Regression Model. 1. Introduction
ECONOMICS 35* -- NOTE 7 ECON 35* -- NOTE 7 Interval Estmaton n the Classcal Normal Lnear Regresson Model Ths note outlnes the basc elements of nterval estmaton n the Classcal Normal Lnear Regresson Model
More information2.3 Nilpotent endomorphisms
s a block dagonal matrx, wth A Mat dm U (C) In fact, we can assume that B = B 1 B k, wth B an ordered bass of U, and that A = [f U ] B, where f U : U U s the restrcton of f to U 40 23 Nlpotent endomorphsms
More informationStat 642, Lecture notes for 01/27/ d i = 1 t. n i t nj. n j
Stat 642, Lecture notes for 01/27/05 18 Rate Standardzaton Contnued: Note that f T n t where T s the cumulatve follow-up tme and n s the number of subjects at rsk at the mdpont or nterval, and d s the
More informationEstimation: Part 2. Chapter GREG estimation
Chapter 9 Estmaton: Part 2 9. GREG estmaton In Chapter 8, we have seen that the regresson estmator s an effcent estmator when there s a lnear relatonshp between y and x. In ths chapter, we generalzed the
More information2E Pattern Recognition Solutions to Introduction to Pattern Recognition, Chapter 2: Bayesian pattern classification
E395 - Pattern Recognton Solutons to Introducton to Pattern Recognton, Chapter : Bayesan pattern classfcaton Preface Ths document s a soluton manual for selected exercses from Introducton to Pattern Recognton
More informationParametric fractional imputation for missing data analysis. Jae Kwang Kim Survey Working Group Seminar March 29, 2010
Parametrc fractonal mputaton for mssng data analyss Jae Kwang Km Survey Workng Group Semnar March 29, 2010 1 Outlne Introducton Proposed method Fractonal mputaton Approxmaton Varance estmaton Multple mputaton
More informationSTAT 511 FINAL EXAM NAME Spring 2001
STAT 5 FINAL EXAM NAME Sprng Instructons: Ths s a closed book exam. No notes or books are allowed. ou may use a calculator but you are not allowed to store notes or formulas n the calculator. Please wrte
More informationChapter 2 - The Simple Linear Regression Model S =0. e i is a random error. S β2 β. This is a minimization problem. Solution is a calculus exercise.
Chapter - The Smple Lnear Regresson Model The lnear regresson equaton s: where y + = β + β e for =,..., y and are observable varables e s a random error How can an estmaton rule be constructed for the
More informationDERIVATION OF THE PROBABILITY PLOT CORRELATION COEFFICIENT TEST STATISTICS FOR THE GENERALIZED LOGISTIC DISTRIBUTION
Internatonal Worshop ADVANCES IN STATISTICAL HYDROLOGY May 3-5, Taormna, Italy DERIVATION OF THE PROBABILITY PLOT CORRELATION COEFFICIENT TEST STATISTICS FOR THE GENERALIZED LOGISTIC DISTRIBUTION by Sooyoung
More informatione i is a random error
Chapter - The Smple Lnear Regresson Model The lnear regresson equaton s: where + β + β e for,..., and are observable varables e s a random error How can an estmaton rule be constructed for the unknown
More informationTian Zheng Department of Statistics Columbia University
Haplotype Tansmsson Assocaton (HTA) An "Impotance" Measue fo Selectng Genetc Makes Tan Zheng Depatment of Statstcs Columba Unvesty Ths s a jont wok wth Pofesso Shaw-Hwa Lo n the Depatment of Statstcs at
More informationTHE ROYAL STATISTICAL SOCIETY 2006 EXAMINATIONS SOLUTIONS HIGHER CERTIFICATE
THE ROYAL STATISTICAL SOCIETY 6 EXAMINATIONS SOLUTIONS HIGHER CERTIFICATE PAPER I STATISTICAL THEORY The Socety provdes these solutons to assst canddates preparng for the eamnatons n future years and for
More informationSIMPLE LINEAR REGRESSION
Smple Lnear Regresson and Correlaton Introducton Prevousl, our attenton has been focused on one varable whch we desgnated b x. Frequentl, t s desrable to learn somethng about the relatonshp between two
More informationDECADAL DECLINE ( )OF LOGGERHEAD SHRIKES ON CHRISTMAS BIRD COUNTS IN ALABAMA, MISSISSIPPI, AND TENNESSEE
DEPARTMENT OF MATHEMATICS TECHNICAL REPORT DECADAL DECLINE (1992-22)OF LOGGERHEAD SHRIKES ON CHRISTMAS BIRD COUNTS IN ALABAMA, MISSISSIPPI, AND TENNESSEE DR. STEPHEN J. STEDMAN AND DR. MICHAEL ALLEN AUGUST
More informationAnalysis of the Magnetomotive Force of a Three-Phase Winding with Concentrated Coils and Different Symmetry Features
Analyss of the Magnetomotve Force of a Three-Phase Wndng wth Concentrated Cols and Dfferent Symmetry Features Deter Gerlng Unversty of Federal Defense Munch, Neubberg, 85579, Germany Emal: Deter.Gerlng@unbw.de
More informationHere is the rationale: If X and y have a strong positive relationship to one another, then ( x x) will tend to be positive when ( y y)
Secton 1.5 Correlaton In the prevous sectons, we looked at regresson and the value r was a measurement of how much of the varaton n y can be attrbuted to the lnear relatonshp between y and x. In ths secton,
More informationCSci 6974 and ECSE 6966 Math. Tech. for Vision, Graphics and Robotics Lecture 21, April 17, 2006 Estimating A Plane Homography
CSc 6974 and ECSE 6966 Math. Tech. for Vson, Graphcs and Robotcs Lecture 21, Aprl 17, 2006 Estmatng A Plane Homography Overvew We contnue wth a dscusson of the major ssues, usng estmaton of plane projectve
More informationAn (almost) unbiased estimator for the S-Gini index
An (almost unbased estmator for the S-Gn ndex Thomas Demuynck February 25, 2009 Abstract Ths note provdes an unbased estmator for the absolute S-Gn and an almost unbased estmator for the relatve S-Gn for
More informationHow its computed. y outcome data λ parameters hyperparameters. where P denotes the Laplace approximation. k i k k. Andrew B Lawson 2013
Andrew Lawson MUSC INLA INLA s a relatvely new tool that can be used to approxmate posteror dstrbutons n Bayesan models INLA stands for ntegrated Nested Laplace Approxmaton The approxmaton has been known
More informationDr. Shalabh Department of Mathematics and Statistics Indian Institute of Technology Kanpur
Analyss of Varance and Desgn of Experment-I MODULE VII LECTURE - 3 ANALYSIS OF COVARIANCE Dr Shalabh Department of Mathematcs and Statstcs Indan Insttute of Technology Kanpur Any scentfc experment s performed
More informationComputation of Higher Order Moments from Two Multinomial Overdispersion Likelihood Models
Computaton of Hgher Order Moments from Two Multnomal Overdsperson Lkelhood Models BY J. T. NEWCOMER, N. K. NEERCHAL Department of Mathematcs and Statstcs, Unversty of Maryland, Baltmore County, Baltmore,
More informationSTK4080/9080 Survival and event history analysis
SK48/98 Survval and event hstory analyss Lecture 7: Regresson modellng Relatve rsk regresson Regresson models Assume that we have a sample of n ndvduals, and let N (t) count the observed occurrences of
More informationx i1 =1 for all i (the constant ).
Chapter 5 The Multple Regresson Model Consder an economc model where the dependent varable s a functon of K explanatory varables. The economc model has the form: y = f ( x,x,..., ) xk Approxmate ths by
More informationImportant Instructions to the Examiners:
Summer 0 Examnaton Subject & Code: asc Maths (70) Model Answer Page No: / Important Instructons to the Examners: ) The Answers should be examned by key words and not as word-to-word as gven n the model
More informationSampling Theory MODULE VII LECTURE - 23 VARYING PROBABILITY SAMPLING
Samplng heory MODULE VII LECURE - 3 VARYIG PROBABILIY SAMPLIG DR. SHALABH DEPARME OF MAHEMAICS AD SAISICS IDIA ISIUE OF ECHOLOGY KAPUR he smple random samplng scheme provdes a random sample where every
More information/ n ) are compared. The logic is: if the two
STAT C141, Sprng 2005 Lecture 13 Two sample tests One sample tests: examples of goodness of ft tests, where we are testng whether our data supports predctons. Two sample tests: called as tests of ndependence
More informationStatistics Chapter 4
Statstcs Chapter 4 "There are three knds of les: les, damned les, and statstcs." Benjamn Dsrael, 1895 (Brtsh statesman) Gaussan Dstrbuton, 4-1 If a measurement s repeated many tmes a statstcal treatment
More informationSTAT 3340 Assignment 1 solutions. 1. Find the equation of the line which passes through the points (1,1) and (4,5).
(out of 15 ponts) STAT 3340 Assgnment 1 solutons (10) (10) 1. Fnd the equaton of the lne whch passes through the ponts (1,1) and (4,5). β 1 = (5 1)/(4 1) = 4/3 equaton for the lne s y y 0 = β 1 (x x 0
More informationDUE: WEDS FEB 21ST 2018
HOMEWORK # 1: FINITE DIFFERENCES IN ONE DIMENSION DUE: WEDS FEB 21ST 2018 1. Theory Beam bendng s a classcal engneerng analyss. The tradtonal soluton technque makes smplfyng assumptons such as a constant
More information