Computa(on of Similarity Similarity Search as Computa(on. Stoyan Mihov and Klaus U. Schulz

Size: px
Start display at page:

Download "Computa(on of Similarity Similarity Search as Computa(on. Stoyan Mihov and Klaus U. Schulz"

Transcription

1 Computa(on of Similarity Similarity Search as Computa(on Stoyan Mihov and Klaus U. Schulz

2 Roadmap What is similarity computa(on? NLP examples of similarity computa(on Machine transla(on Speech recogni(on Text correc(on and historical text normaliza(on Research direc(ons General picture Efficient similarity filtering with universal Levenshtein automata Distance defini(on with expecta(on maximiza(on Viterbi and beam search in HMM und Approximate search in large databases Conclusion

3 What is similarity computa(on? For a given paqern find the object from a target set, which is: AND most similar in respect to a given distance like acous(c similarity, orthographic similarity etc. most plausible e.g. in respect to syntax, context etc.

4 Sta(s(cal Machine Transla(on Input Paern: sequence of words (sentence in the source language Target object: sequence of words (sentence in the target language Target set: all finite sequences of words in the target language Similarity measure: transla(on equivalence probability of the correspondence of individual pairs of words or phrases given by a transla(on model Object plausibility : object probability in target language given by a language model (e.g. Markov model

5 Sta(s(cal Machine Transla(on (cont. Pr(e f = Pr( f epr(e Pr( f ê = argmaxpr( f epr(e e n i=1 Pr(e = Pr(e i e i!k e i!k+1 e i!1! a Pr( f e = Pr( f, a e Pr( f, a e = m Pr(m e! Pr( f (l +1 m j e aj j=1 e = e 1 e 2 e l f = f 1 f 2 f m a = a 1 a 2 a m a i! {0,1,,l}

6 Speech Recogni(on Input Paern: audio signal converted to a sequence of feature vectors for each slice of the signal Target object: sequence of words in the target language Target set: all finite sequences of words in the target language Similarity measure: acous(c equivalence probability of the correspondence of subsequence of feature vectors with a word phone(za(on given by an acous(c model Object plausibility: object probability in target language given by a language model (e.g. Markov model

7 Speech Recogni(on (cont.

8 Text correc(on and historical text normaliza(on Input Paern: sequence of possibly grabbled / historical words Target object: sequence of corrected /normalized words Target set: all finite sequences of words in the correct / modern language Similarity measure: Edit distance in respect to primi(ve edit opera(ons / historical varia(on paqerns of individual pairs of words or phrases Object plausibility: object probability in the correct / modern language given by a language model (e.g. Markov model

9 Text correc(on and historical text normaliza(on (cont. Dictionary: D = {w 1, w 2,, w n } Uncorrected or historical text: u 1 u 2 u l! ( * l Corrected or normalized text: w i1 w i2 w il l = argmax log P(w i1 w i2 w il #d(u k, w ik w i 1 w i2 w il!dl k=1

10 Research roadmap Base no(on of similarity Basic methods for approximate search Refined no(on of similarity Feedback similarity results Online efficiency improvement Efficient approximate search methods Efficient approximate search methods With refined no(on of similarity

11 Research examples Efficient methods for approximate search universal Levenshtein automata possibly aligning all parts of the paqern in parallel (instead of le^ to right alignment Distance defini(on based on data analysis: expecta(on maximiza(on

12 Universal Levenshtein Automata Effec(ve characteriza(on of the set of words within a given distance to a paqern Allows efficient similarity filtering Universal does not depend on the paqern Transi(ons on characteris(c vectors calculated in respect to the paqern Existence of universal Automaton for the natural Edit distances

13 Approximate search in large databases Wall effect: Tolera(ng all mismatches in the beginning of the sequence yields to a full traversal of all the prefixes in the data set. Possible solu(on: Tolera(ng only half of the possible mismatches in the first half of the sequence, tolerate all in the second half Repeat the procedure on the backwards dic(onary Forward dic(onary Backwards dic(onary

14 Viterbi and beam search in HMM!# $ %&# $'( a 1,1 a 1,2 a 2,2 a 2,3 b 1 b 2 b 3 Viterbi algorithm t (i = max s 1,,s t#1 P(O 1,,O t,s 1,,s t = i 1 (i = a 0,i b i (O 1 a 3,3 t +1 (i = max t ( ja j,i b i (O t +1 j *! % + '!# $ %&# $'( #!! &!# $ %&# $'( &!# $ %&# $'( Naïve search complexity: O(N T Viterbi search complexity: O(N 2 T Beam search complexity: O(MNT ( & & ' # $

15 Acous(c similarity HMM training with the Baum Welch algorithm a 1,1 a 2,2 a 3,3 Forward algorithm Backwards algorithm a 1,2 a 2,3 b 1 b 2 b 3 t (i = P(O 1,,O t,s t = i = $ = P(O 1,,O t,s 1,,s t = i s 1,,s t#1 1 (i = a 0,i b i (O 1 $ t +1 (i = t ( ja j,i b i (O t +1 j t (i = P(O t +1 s t = i T (i =1 # t (i = a i, j b j (O t +1 t +1 ( j j Forward-backwards algorithm t (i, j = P(s t = i,s t +1 = j O 1 = P(O 1,s t = i,s t +1 = j P(O 1 t (i, j = # t (ia i, j b j (O t +1 $ t +1 ( j P(O 1 % t (i = P(s t = i O 1 = t (i, j j Baum-Welch algorithm L( O 1 = logp(o 1 argmaxl( O 1 â i, j = T!1 t=1 T!1 t=1! t (i, j! t (i ĉ i,k = T t=1 T t=1 t (i, k! t (i t (i, k = j # t ( ja j,i c i,k N(O t ;µ i,k, # i,k $ t (i P(O 1 ˆµ i,k = T t=1 T t=1! t (i, ko t! t (i, k ˆ# i,k = T t=1 T! t (i, ko t $ t=1! t (i, k O t! ˆµ i,k ( ˆµ i,k $

16 Conclusion Similarity computa(on paradigm: not a universal model of computa(on But: arising in many NLP applica(ons Adap(ve methods necessary since op(mal no(on of similarity is context and applica(on dependent Efficiency is central issue because of huge search space

HIDDEN MARKOV MODELS IN SPEECH RECOGNITION

HIDDEN MARKOV MODELS IN SPEECH RECOGNITION HIDDEN MARKOV MODELS IN SPEECH RECOGNITION Wayne Ward Carnegie Mellon University Pittsburgh, PA 1 Acknowledgements Much of this talk is derived from the paper "An Introduction to Hidden Markov Models",

More information

Sta$s$cal sequence recogni$on

Sta$s$cal sequence recogni$on Sta$s$cal sequence recogni$on Determinis$c sequence recogni$on Last $me, temporal integra$on of local distances via DP Integrates local matches over $me Normalizes $me varia$ons For cts speech, segments

More information

Statistical NLP: Hidden Markov Models. Updated 12/15

Statistical NLP: Hidden Markov Models. Updated 12/15 Statistical NLP: Hidden Markov Models Updated 12/15 Markov Models Markov models are statistical tools that are useful for NLP because they can be used for part-of-speech-tagging applications Their first

More information

Hidden Markov Models

Hidden Markov Models Hidden Markov Models Slides mostly from Mitch Marcus and Eric Fosler (with lots of modifications). Have you seen HMMs? Have you seen Kalman filters? Have you seen dynamic programming? HMMs are dynamic

More information

1. Markov models. 1.1 Markov-chain

1. Markov models. 1.1 Markov-chain 1. Markov models 1.1 Markov-chain Let X be a random variable X = (X 1,..., X t ) taking values in some set S = {s 1,..., s N }. The sequence is Markov chain if it has the following properties: 1. Limited

More information

CSCI 360 Introduc/on to Ar/ficial Intelligence Week 2: Problem Solving and Op/miza/on. Professor Wei-Min Shen Week 8.1 and 8.2

CSCI 360 Introduc/on to Ar/ficial Intelligence Week 2: Problem Solving and Op/miza/on. Professor Wei-Min Shen Week 8.1 and 8.2 CSCI 360 Introduc/on to Ar/ficial Intelligence Week 2: Problem Solving and Op/miza/on Professor Wei-Min Shen Week 8.1 and 8.2 Status Check Projects Project 2 Midterm is coming, please do your homework!

More information

Out of GIZA Efficient Word Alignment Models for SMT

Out of GIZA Efficient Word Alignment Models for SMT Out of GIZA Efficient Word Alignment Models for SMT Yanjun Ma National Centre for Language Technology School of Computing Dublin City University NCLT Seminar Series March 4, 2009 Y. Ma (DCU) Out of Giza

More information

Machine Learning & Data Mining CS/CNS/EE 155. Lecture 11: Hidden Markov Models

Machine Learning & Data Mining CS/CNS/EE 155. Lecture 11: Hidden Markov Models Machine Learning & Data Mining CS/CNS/EE 155 Lecture 11: Hidden Markov Models 1 Kaggle Compe==on Part 1 2 Kaggle Compe==on Part 2 3 Announcements Updated Kaggle Report Due Date: 9pm on Monday Feb 13 th

More information

Hidden Markov Modelling

Hidden Markov Modelling Hidden Markov Modelling Introduction Problem formulation Forward-Backward algorithm Viterbi search Baum-Welch parameter estimation Other considerations Multiple observation sequences Phone-based models

More information

Multiscale Systems Engineering Research Group

Multiscale Systems Engineering Research Group Hidden Markov Model Prof. Yan Wang Woodruff School of Mechanical Engineering Georgia Institute of echnology Atlanta, GA 30332, U.S.A. yan.wang@me.gatech.edu Learning Objectives o familiarize the hidden

More information

Hidden Markov Models The three basic HMM problems (note: change in notation) Mitch Marcus CSE 391

Hidden Markov Models The three basic HMM problems (note: change in notation) Mitch Marcus CSE 391 Hidden Markov Models The three basic HMM problems (note: change in notation) Mitch Marcus CSE 391 Parameters of an HMM States: A set of states S=s 1, s n Transition probabilities: A= a 1,1, a 1,2,, a n,n

More information

COMP90051 Statistical Machine Learning

COMP90051 Statistical Machine Learning COMP90051 Statistical Machine Learning Semester 2, 2017 Lecturer: Trevor Cohn 24. Hidden Markov Models & message passing Looking back Representation of joint distributions Conditional/marginal independence

More information

Machine Learning for natural language processing

Machine Learning for natural language processing Machine Learning for natural language processing Hidden Markov Models Laura Kallmeyer Heinrich-Heine-Universität Düsseldorf Summer 2016 1 / 33 Introduction So far, we have classified texts/observations

More information

Machine Learning & Data Mining CS/CNS/EE 155. Lecture 8: Hidden Markov Models

Machine Learning & Data Mining CS/CNS/EE 155. Lecture 8: Hidden Markov Models Machine Learning & Data Mining CS/CNS/EE 155 Lecture 8: Hidden Markov Models 1 x = Fish Sleep y = (N, V) Sequence Predic=on (POS Tagging) x = The Dog Ate My Homework y = (D, N, V, D, N) x = The Fox Jumped

More information

Lecture 3: ASR: HMMs, Forward, Viterbi

Lecture 3: ASR: HMMs, Forward, Viterbi Original slides by Dan Jurafsky CS 224S / LINGUIST 285 Spoken Language Processing Andrew Maas Stanford University Spring 2017 Lecture 3: ASR: HMMs, Forward, Viterbi Fun informative read on phonetics The

More information

Hidden Markov Models. Aarti Singh Slides courtesy: Eric Xing. Machine Learning / Nov 8, 2010

Hidden Markov Models. Aarti Singh Slides courtesy: Eric Xing. Machine Learning / Nov 8, 2010 Hidden Markov Models Aarti Singh Slides courtesy: Eric Xing Machine Learning 10-701/15-781 Nov 8, 2010 i.i.d to sequential data So far we assumed independent, identically distributed data Sequential data

More information

Dept. of Linguistics, Indiana University Fall 2009

Dept. of Linguistics, Indiana University Fall 2009 1 / 14 Markov L645 Dept. of Linguistics, Indiana University Fall 2009 2 / 14 Markov (1) (review) Markov A Markov Model consists of: a finite set of statesω={s 1,...,s n }; an signal alphabetσ={σ 1,...,σ

More information

Introduction to Machine Learning CMU-10701

Introduction to Machine Learning CMU-10701 Introduction to Machine Learning CMU-10701 Hidden Markov Models Barnabás Póczos & Aarti Singh Slides courtesy: Eric Xing i.i.d to sequential data So far we assumed independent, identically distributed

More information

University of Cambridge. MPhil in Computer Speech Text & Internet Technology. Module: Speech Processing II. Lecture 2: Hidden Markov Models I

University of Cambridge. MPhil in Computer Speech Text & Internet Technology. Module: Speech Processing II. Lecture 2: Hidden Markov Models I University of Cambridge MPhil in Computer Speech Text & Internet Technology Module: Speech Processing II Lecture 2: Hidden Markov Models I o o o o o 1 2 3 4 T 1 b 2 () a 12 2 a 3 a 4 5 34 a 23 b () b ()

More information

Log-Linear Models, MEMMs, and CRFs

Log-Linear Models, MEMMs, and CRFs Log-Linear Models, MEMMs, and CRFs Michael Collins 1 Notation Throughout this note I ll use underline to denote vectors. For example, w R d will be a vector with components w 1, w 2,... w d. We use expx

More information

Minimum Edit Distance. Defini'on of Minimum Edit Distance

Minimum Edit Distance. Defini'on of Minimum Edit Distance Minimum Edit Distance Defini'on of Minimum Edit Distance How similar are two strings? Spell correc'on The user typed graffe Which is closest? graf gra@ grail giraffe Computa'onal Biology Align two sequences

More information

Hidden Markov models

Hidden Markov models Hidden Markov models Charles Elkan November 26, 2012 Important: These lecture notes are based on notes written by Lawrence Saul. Also, these typeset notes lack illustrations. See the classroom lectures

More information

Machine Learning & Data Mining Caltech CS/CNS/EE 155 Hidden Markov Models Last Updated: Feb 7th, 2017

Machine Learning & Data Mining Caltech CS/CNS/EE 155 Hidden Markov Models Last Updated: Feb 7th, 2017 1 Introduction Let x = (x 1,..., x M ) denote a sequence (e.g. a sequence of words), and let y = (y 1,..., y M ) denote a corresponding hidden sequence that we believe explains or influences x somehow

More information

Hidden Markov Models in Language Processing

Hidden Markov Models in Language Processing Hidden Markov Models in Language Processing Dustin Hillard Lecture notes courtesy of Prof. Mari Ostendorf Outline Review of Markov models What is an HMM? Examples General idea of hidden variables: implications

More information

Hidden Markov Models. By Parisa Abedi. Slides courtesy: Eric Xing

Hidden Markov Models. By Parisa Abedi. Slides courtesy: Eric Xing Hidden Markov Models By Parisa Abedi Slides courtesy: Eric Xing i.i.d to sequential data So far we assumed independent, identically distributed data Sequential (non i.i.d.) data Time-series data E.g. Speech

More information

CSE 473: Ar+ficial Intelligence. Probability Recap. Markov Models - II. Condi+onal probability. Product rule. Chain rule.

CSE 473: Ar+ficial Intelligence. Probability Recap. Markov Models - II. Condi+onal probability. Product rule. Chain rule. CSE 473: Ar+ficial Intelligence Markov Models - II Daniel S. Weld - - - University of Washington [Most slides were created by Dan Klein and Pieter Abbeel for CS188 Intro to AI at UC Berkeley. All CS188

More information

Hidden Markov Models and Gaussian Mixture Models

Hidden Markov Models and Gaussian Mixture Models Hidden Markov Models and Gaussian Mixture Models Hiroshi Shimodaira and Steve Renals Automatic Speech Recognition ASR Lectures 4&5 23&27 January 2014 ASR Lectures 4&5 Hidden Markov Models and Gaussian

More information

Statistical Methods for NLP

Statistical Methods for NLP Statistical Methods for NLP Sequence Models Joakim Nivre Uppsala University Department of Linguistics and Philology joakim.nivre@lingfil.uu.se Statistical Methods for NLP 1(21) Introduction Structured

More information

Hidden Markov Models

Hidden Markov Models 10-601 Introduction to Machine Learning Machine Learning Department School of Computer Science Carnegie Mellon University Hidden Markov Models Matt Gormley Lecture 22 April 2, 2018 1 Reminders Homework

More information

Hidden Markov Model. Ying Wu. Electrical Engineering and Computer Science Northwestern University Evanston, IL 60208

Hidden Markov Model. Ying Wu. Electrical Engineering and Computer Science Northwestern University Evanston, IL 60208 Hidden Markov Model Ying Wu Electrical Engineering and Computer Science Northwestern University Evanston, IL 60208 http://www.eecs.northwestern.edu/~yingwu 1/19 Outline Example: Hidden Coin Tossing Hidden

More information

Hidden Markov Models. Ivan Gesteira Costa Filho IZKF Research Group Bioinformatics RWTH Aachen Adapted from:

Hidden Markov Models. Ivan Gesteira Costa Filho IZKF Research Group Bioinformatics RWTH Aachen Adapted from: Hidden Markov Models Ivan Gesteira Costa Filho IZKF Research Group Bioinformatics RWTH Aachen Adapted from: www.ioalgorithms.info Outline CG-islands The Fair Bet Casino Hidden Markov Model Decoding Algorithm

More information

An Introduction to Bioinformatics Algorithms Hidden Markov Models

An Introduction to Bioinformatics Algorithms  Hidden Markov Models Hidden Markov Models Hidden Markov Models Outline CG-islands The Fair Bet Casino Hidden Markov Model Decoding Algorithm Forward-Backward Algorithm Profile HMMs HMM Parameter Estimation Viterbi training

More information

Hidden Markov Model and Speech Recognition

Hidden Markov Model and Speech Recognition 1 Dec,2006 Outline Introduction 1 Introduction 2 3 4 5 Introduction What is Speech Recognition? Understanding what is being said Mapping speech data to textual information Speech Recognition is indeed

More information

Lecture 11: Hidden Markov Models

Lecture 11: Hidden Markov Models Lecture 11: Hidden Markov Models Cognitive Systems - Machine Learning Cognitive Systems, Applied Computer Science, Bamberg University slides by Dr. Philip Jackson Centre for Vision, Speech & Signal Processing

More information

CS 136a Lecture 7 Speech Recognition Architecture: Training models with the Forward backward algorithm

CS 136a Lecture 7 Speech Recognition Architecture: Training models with the Forward backward algorithm + September13, 2016 Professor Meteer CS 136a Lecture 7 Speech Recognition Architecture: Training models with the Forward backward algorithm Thanks to Dan Jurafsky for these slides + ASR components n Feature

More information

Substroke Approach to HMM-based On-line Kanji Handwriting Recognition

Substroke Approach to HMM-based On-line Kanji Handwriting Recognition Sixth International Conference on Document nalysis and Recognition (ICDR 2001), pp.491-495 (2001-09) Substroke pproach to HMM-based On-line Kanji Handwriting Recognition Mitsuru NKI, Naoto KIR, Hiroshi

More information

Advanced Data Science

Advanced Data Science Advanced Data Science Dr. Kira Radinsky Slides Adapted from Tom M. Mitchell Agenda Topics Covered: Time series data Markov Models Hidden Markov Models Dynamic Bayes Nets Additional Reading: Bishop: Chapter

More information

Engineering Part IIB: Module 4F11 Speech and Language Processing Lectures 4/5 : Speech Recognition Basics

Engineering Part IIB: Module 4F11 Speech and Language Processing Lectures 4/5 : Speech Recognition Basics Engineering Part IIB: Module 4F11 Speech and Language Processing Lectures 4/5 : Speech Recognition Basics Phil Woodland: pcw@eng.cam.ac.uk Lent 2013 Engineering Part IIB: Module 4F11 What is Speech Recognition?

More information

Hidden Markov Models Hamid R. Rabiee

Hidden Markov Models Hamid R. Rabiee Hidden Markov Models Hamid R. Rabiee 1 Hidden Markov Models (HMMs) In the previous slides, we have seen that in many cases the underlying behavior of nature could be modeled as a Markov process. However

More information

Probability and Structure in Natural Language Processing

Probability and Structure in Natural Language Processing Probability and Structure in Natural Language Processing Noah Smith, Carnegie Mellon University 2012 Interna@onal Summer School in Language and Speech Technologies Quick Recap Yesterday: Bayesian networks

More information

Hidden Markov Models and Gaussian Mixture Models

Hidden Markov Models and Gaussian Mixture Models Hidden Markov Models and Gaussian Mixture Models Hiroshi Shimodaira and Steve Renals Automatic Speech Recognition ASR Lectures 4&5 25&29 January 2018 ASR Lectures 4&5 Hidden Markov Models and Gaussian

More information

Hidden Markov Models Part 2: Algorithms

Hidden Markov Models Part 2: Algorithms Hidden Markov Models Part 2: Algorithms CSE 6363 Machine Learning Vassilis Athitsos Computer Science and Engineering Department University of Texas at Arlington 1 Hidden Markov Model An HMM consists of:

More information

Lecture 12: Algorithms for HMMs

Lecture 12: Algorithms for HMMs Lecture 12: Algorithms for HMMs Nathan Schneider (some slides from Sharon Goldwater; thanks to Jonathan May for bug fixes) ENLP 17 October 2016 updated 9 September 2017 Recap: tagging POS tagging is a

More information

Hidden Markov Models NIKOLAY YAKOVETS

Hidden Markov Models NIKOLAY YAKOVETS Hidden Markov Models NIKOLAY YAKOVETS A Markov System N states s 1,..,s N S 2 S 1 S 3 A Markov System N states s 1,..,s N S 2 S 1 S 3 modeling weather A Markov System state changes over time.. S 1 S 2

More information

Statistical Methods for NLP

Statistical Methods for NLP Statistical Methods for NLP Information Extraction, Hidden Markov Models Sameer Maskey Week 5, Oct 3, 2012 *many slides provided by Bhuvana Ramabhadran, Stanley Chen, Michael Picheny Speech Recognition

More information

CSE 473: Ar+ficial Intelligence

CSE 473: Ar+ficial Intelligence CSE 473: Ar+ficial Intelligence Hidden Markov Models Luke Ze@lemoyer - University of Washington [These slides were created by Dan Klein and Pieter Abbeel for CS188 Intro to AI at UC Berkeley. All CS188

More information

CS 7180: Behavioral Modeling and Decision- making in AI

CS 7180: Behavioral Modeling and Decision- making in AI CS 7180: Behavioral Modeling and Decision- making in AI Hidden Markov Models Prof. Amy Sliva October 26, 2012 Par?ally observable temporal domains POMDPs represented uncertainty about the state Belief

More information

What s an HMM? Extraction with Finite State Machines e.g. Hidden Markov Models (HMMs) Hidden Markov Models (HMMs) for Information Extraction

What s an HMM? Extraction with Finite State Machines e.g. Hidden Markov Models (HMMs) Hidden Markov Models (HMMs) for Information Extraction Hidden Markov Models (HMMs) for Information Extraction Daniel S. Weld CSE 454 Extraction with Finite State Machines e.g. Hidden Markov Models (HMMs) standard sequence model in genomics, speech, NLP, What

More information

P(t w) = arg maxp(t, w) (5.1) P(t,w) = P(t)P(w t). (5.2) The first term, P(t), can be described using a language model, for example, a bigram model:

P(t w) = arg maxp(t, w) (5.1) P(t,w) = P(t)P(w t). (5.2) The first term, P(t), can be described using a language model, for example, a bigram model: Chapter 5 Text Input 5.1 Problem In the last two chapters we looked at language models, and in your first homework you are building language models for English and Chinese to enable the computer to guess

More information

order is number of previous outputs

order is number of previous outputs Markov Models Lecture : Markov and Hidden Markov Models PSfrag Use past replacements as state. Next output depends on previous output(s): y t = f[y t, y t,...] order is number of previous outputs y t y

More information

We Live in Exciting Times. CSCI-567: Machine Learning (Spring 2019) Outline. Outline. ACM (an international computing research society) has named

We Live in Exciting Times. CSCI-567: Machine Learning (Spring 2019) Outline. Outline. ACM (an international computing research society) has named We Live in Exciting Times ACM (an international computing research society) has named CSCI-567: Machine Learning (Spring 2019) Prof. Victor Adamchik U of Southern California Apr. 2, 2019 Yoshua Bengio,

More information

Hidden Markov Models

Hidden Markov Models 10-601 Introduction to Machine Learning Machine Learning Department School of Computer Science Carnegie Mellon University Hidden Markov Models Matt Gormley Lecture 19 Nov. 5, 2018 1 Reminders Homework

More information

Graphical models for part of speech tagging

Graphical models for part of speech tagging Indian Institute of Technology, Bombay and Research Division, India Research Lab Graphical models for part of speech tagging Different Models for POS tagging HMM Maximum Entropy Markov Models Conditional

More information

Ngram Review. CS 136 Lecture 10 Language Modeling. Thanks to Dan Jurafsky for these slides. October13, 2017 Professor Meteer

Ngram Review. CS 136 Lecture 10 Language Modeling. Thanks to Dan Jurafsky for these slides. October13, 2017 Professor Meteer + Ngram Review October13, 2017 Professor Meteer CS 136 Lecture 10 Language Modeling Thanks to Dan Jurafsky for these slides + ASR components n Feature Extraction, MFCCs, start of Acoustic n HMMs, the Forward

More information

Lecture 17: Face Recogni2on

Lecture 17: Face Recogni2on Lecture 17: Face Recogni2on Dr. Juan Carlos Niebles Stanford AI Lab Professor Fei-Fei Li Stanford Vision Lab Lecture 17-1! What we will learn today Introduc2on to face recogni2on Principal Component Analysis

More information

CS460/626 : Natural Language

CS460/626 : Natural Language CS460/626 : Natural Language Processing/Speech, NLP and the Web (Lecture 27 SMT Assignment; HMM recap; Probabilistic Parsing cntd) Pushpak Bhattacharyya CSE Dept., IIT Bombay 17 th March, 2011 CMU Pronunciation

More information

ACS Introduction to NLP Lecture 2: Part of Speech (POS) Tagging

ACS Introduction to NLP Lecture 2: Part of Speech (POS) Tagging ACS Introduction to NLP Lecture 2: Part of Speech (POS) Tagging Stephen Clark Natural Language and Information Processing (NLIP) Group sc609@cam.ac.uk The POS Tagging Problem 2 England NNP s POS fencers

More information

CISC 889 Bioinformatics (Spring 2004) Hidden Markov Models (II)

CISC 889 Bioinformatics (Spring 2004) Hidden Markov Models (II) CISC 889 Bioinformatics (Spring 24) Hidden Markov Models (II) a. Likelihood: forward algorithm b. Decoding: Viterbi algorithm c. Model building: Baum-Welch algorithm Viterbi training Hidden Markov models

More information

Graphical Models Seminar

Graphical Models Seminar Graphical Models Seminar Forward-Backward and Viterbi Algorithm for HMMs Bishop, PRML, Chapters 13.2.2, 13.2.3, 13.2.5 Dinu Kaufmann Departement Mathematik und Informatik Universität Basel April 8, 2013

More information

Sequence labeling. Taking collective a set of interrelated instances x 1,, x T and jointly labeling them

Sequence labeling. Taking collective a set of interrelated instances x 1,, x T and jointly labeling them HMM, MEMM and CRF 40-957 Special opics in Artificial Intelligence: Probabilistic Graphical Models Sharif University of echnology Soleymani Spring 2014 Sequence labeling aking collective a set of interrelated

More information

Recall: Modeling Time Series. CSE 586, Spring 2015 Computer Vision II. Hidden Markov Model and Kalman Filter. Modeling Time Series

Recall: Modeling Time Series. CSE 586, Spring 2015 Computer Vision II. Hidden Markov Model and Kalman Filter. Modeling Time Series Recall: Modeling Time Series CSE 586, Spring 2015 Computer Vision II Hidden Markov Model and Kalman Filter State-Space Model: You have a Markov chain of latent (unobserved) states Each state generates

More information

Data Mining in Bioinformatics HMM

Data Mining in Bioinformatics HMM Data Mining in Bioinformatics HMM Microarray Problem: Major Objective n Major Objective: Discover a comprehensive theory of life s organization at the molecular level 2 1 Data Mining in Bioinformatics

More information

Discrimina)ve Latent Variable Models. SPFLODD November 15, 2011

Discrimina)ve Latent Variable Models. SPFLODD November 15, 2011 Discrimina)ve Latent Variable Models SPFLODD November 15, 2011 Lecture Plan 1. Latent variables in genera)ve models (review) 2. Latent variables in condi)onal models 3. Latent variables in structural SVMs

More information

Lecture 12: Algorithms for HMMs

Lecture 12: Algorithms for HMMs Lecture 12: Algorithms for HMMs Nathan Schneider (some slides from Sharon Goldwater; thanks to Jonathan May for bug fixes) ENLP 26 February 2018 Recap: tagging POS tagging is a sequence labelling task.

More information

Statistical Processing of Natural Language

Statistical Processing of Natural Language Statistical Processing of Natural Language and DMKM - Universitat Politècnica de Catalunya and 1 2 and 3 1. Observation Probability 2. Best State Sequence 3. Parameter Estimation 4 Graphical and Generative

More information

Machine Learning for OR & FE

Machine Learning for OR & FE Machine Learning for OR & FE Hidden Markov Models Martin Haugh Department of Industrial Engineering and Operations Research Columbia University Email: martin.b.haugh@gmail.com Additional References: David

More information

Recap: HMM. ANLP Lecture 9: Algorithms for HMMs. More general notation. Recap: HMM. Elements of HMM: Sharon Goldwater 4 Oct 2018.

Recap: HMM. ANLP Lecture 9: Algorithms for HMMs. More general notation. Recap: HMM. Elements of HMM: Sharon Goldwater 4 Oct 2018. Recap: HMM ANLP Lecture 9: Algorithms for HMMs Sharon Goldwater 4 Oct 2018 Elements of HMM: Set of states (tags) Output alphabet (word types) Start state (beginning of sentence) State transition probabilities

More information

Page 1. References. Hidden Markov models and multiple sequence alignment. Markov chains. Probability review. Example. Markovian sequence

Page 1. References. Hidden Markov models and multiple sequence alignment. Markov chains. Probability review. Example. Markovian sequence Page Hidden Markov models and multiple sequence alignment Russ B Altman BMI 4 CS 74 Some slides borrowed from Scott C Schmidler (BMI graduate student) References Bioinformatics Classic: Krogh et al (994)

More information

A Higher-Order Interactive Hidden Markov Model and Its Applications Wai-Ki Ching Department of Mathematics The University of Hong Kong

A Higher-Order Interactive Hidden Markov Model and Its Applications Wai-Ki Ching Department of Mathematics The University of Hong Kong A Higher-Order Interactive Hidden Markov Model and Its Applications Wai-Ki Ching Department of Mathematics The University of Hong Kong Abstract: In this talk, a higher-order Interactive Hidden Markov Model

More information

Lecture 4: Hidden Markov Models: An Introduction to Dynamic Decision Making. November 11, 2010

Lecture 4: Hidden Markov Models: An Introduction to Dynamic Decision Making. November 11, 2010 Hidden Lecture 4: Hidden : An Introduction to Dynamic Decision Making November 11, 2010 Special Meeting 1/26 Markov Model Hidden When a dynamical system is probabilistic it may be determined by the transition

More information

More on HMMs and other sequence models. Intro to NLP - ETHZ - 18/03/2013

More on HMMs and other sequence models. Intro to NLP - ETHZ - 18/03/2013 More on HMMs and other sequence models Intro to NLP - ETHZ - 18/03/2013 Summary Parts of speech tagging HMMs: Unsupervised parameter estimation Forward Backward algorithm Bayesian variants Discriminative

More information

HIDDEN MARKOV MODELS

HIDDEN MARKOV MODELS HIDDEN MARKOV MODELS Outline CG-islands The Fair Bet Casino Hidden Markov Model Decoding Algorithm Forward-Backward Algorithm Profile HMMs HMM Parameter Estimation Viterbi training Baum-Welch algorithm

More information

Hidden Markov Models,99,100! Markov, here I come!

Hidden Markov Models,99,100! Markov, here I come! Hidden Markov Models,99,100! Markov, here I come! 16.410/413 Principles of Autonomy and Decision-Making Pedro Santana (psantana@mit.edu) October 7 th, 2015. Based on material by Brian Williams and Emilio

More information

Hidden Markov Models

Hidden Markov Models CS769 Spring 2010 Advanced Natural Language Processing Hidden Markov Models Lecturer: Xiaojin Zhu jerryzhu@cs.wisc.edu 1 Part-of-Speech Tagging The goal of Part-of-Speech (POS) tagging is to label each

More information

Hidden Markov Models and Applica2ons. Spring 2017 February 21,23, 2017

Hidden Markov Models and Applica2ons. Spring 2017 February 21,23, 2017 Hidden Markov Models and Applica2ons Spring 2017 February 21,23, 2017 Gene finding in prokaryotes Reading frames A protein is coded by groups of three nucleo2des (codons): ACGTACGTACGTACGT ACG-TAC-GTA-CGT-ACG-T

More information

Lecture 7: Pitch and Chord (2) HMM, pitch detection functions. Li Su 2016/03/31

Lecture 7: Pitch and Chord (2) HMM, pitch detection functions. Li Su 2016/03/31 Lecture 7: Pitch and Chord (2) HMM, pitch detection functions Li Su 2016/03/31 Chord progressions Chord progressions are not arbitrary Example 1: I-IV-I-V-I (C-F-C-G-C) Example 2: I-V-VI-III-IV-I-II-V

More information

10. Hidden Markov Models (HMM) for Speech Processing. (some slides taken from Glass and Zue course)

10. Hidden Markov Models (HMM) for Speech Processing. (some slides taken from Glass and Zue course) 10. Hidden Markov Models (HMM) for Speech Processing (some slides taken from Glass and Zue course) Definition of an HMM The HMM are powerful statistical methods to characterize the observed samples of

More information

Hidden Markov Models

Hidden Markov Models Hidden Markov Models Outline CG-islands The Fair Bet Casino Hidden Markov Model Decoding Algorithm Forward-Backward Algorithm Profile HMMs HMM Parameter Estimation Viterbi training Baum-Welch algorithm

More information

Statistical Machine Learning from Data

Statistical Machine Learning from Data Samy Bengio Statistical Machine Learning from Data Statistical Machine Learning from Data Samy Bengio IDIAP Research Institute, Martigny, Switzerland, and Ecole Polytechnique Fédérale de Lausanne (EPFL),

More information

Hidden Markov Models

Hidden Markov Models Hidden Markov Models Lecture Notes Speech Communication 2, SS 2004 Erhard Rank/Franz Pernkopf Signal Processing and Speech Communication Laboratory Graz University of Technology Inffeldgasse 16c, A-8010

More information

Temporal Modeling and Basic Speech Recognition

Temporal Modeling and Basic Speech Recognition UNIVERSITY ILLINOIS @ URBANA-CHAMPAIGN OF CS 498PS Audio Computing Lab Temporal Modeling and Basic Speech Recognition Paris Smaragdis paris@illinois.edu paris.cs.illinois.edu Today s lecture Recognizing

More information

Bayesian networks Lecture 18. David Sontag New York University

Bayesian networks Lecture 18. David Sontag New York University Bayesian networks Lecture 18 David Sontag New York University Outline for today Modeling sequen&al data (e.g., =me series, speech processing) using hidden Markov models (HMMs) Bayesian networks Independence

More information

10/17/04. Today s Main Points

10/17/04. Today s Main Points Part-of-speech Tagging & Hidden Markov Model Intro Lecture #10 Introduction to Natural Language Processing CMPSCI 585, Fall 2004 University of Massachusetts Amherst Andrew McCallum Today s Main Points

More information

Robert Collins CSE586 CSE 586, Spring 2015 Computer Vision II

Robert Collins CSE586 CSE 586, Spring 2015 Computer Vision II CSE 586, Spring 2015 Computer Vision II Hidden Markov Model and Kalman Filter Recall: Modeling Time Series State-Space Model: You have a Markov chain of latent (unobserved) states Each state generates

More information

Hidden Markov Models. Three classic HMM problems

Hidden Markov Models. Three classic HMM problems An Introduction to Bioinformatics Algorithms www.bioalgorithms.info Hidden Markov Models Slides revised and adapted to Computational Biology IST 2015/2016 Ana Teresa Freitas Three classic HMM problems

More information

Sequences and Information

Sequences and Information Sequences and Information Rahul Siddharthan The Institute of Mathematical Sciences, Chennai, India http://www.imsc.res.in/ rsidd/ Facets 16, 04/07/2016 This box says something By looking at the symbols

More information

Sequence Labeling: HMMs & Structured Perceptron

Sequence Labeling: HMMs & Structured Perceptron Sequence Labeling: HMMs & Structured Perceptron CMSC 723 / LING 723 / INST 725 MARINE CARPUAT marine@cs.umd.edu HMM: Formal Specification Q: a finite set of N states Q = {q 0, q 1, q 2, q 3, } N N Transition

More information

Hidden Markov Models

Hidden Markov Models Hidden Markov Models CI/CI(CS) UE, SS 2015 Christian Knoll Signal Processing and Speech Communication Laboratory Graz University of Technology June 23, 2015 CI/CI(CS) SS 2015 June 23, 2015 Slide 1/26 Content

More information

Improving the Multi-Stack Decoding Algorithm in a Segment-based Speech Recognizer

Improving the Multi-Stack Decoding Algorithm in a Segment-based Speech Recognizer Improving the Multi-Stack Decoding Algorithm in a Segment-based Speech Recognizer Gábor Gosztolya, András Kocsor Research Group on Artificial Intelligence of the Hungarian Academy of Sciences and University

More information

Computer Vision. Pa0ern Recogni4on Concepts Part I. Luis F. Teixeira MAP- i 2012/13

Computer Vision. Pa0ern Recogni4on Concepts Part I. Luis F. Teixeira MAP- i 2012/13 Computer Vision Pa0ern Recogni4on Concepts Part I Luis F. Teixeira MAP- i 2012/13 What is it? Pa0ern Recogni4on Many defini4ons in the literature The assignment of a physical object or event to one of

More information

HMM: Parameter Estimation

HMM: Parameter Estimation I529: Machine Learning in Bioinformatics (Spring 2017) HMM: Parameter Estimation Yuzhen Ye School of Informatics and Computing Indiana University, Bloomington Spring 2017 Content Review HMM: three problems

More information

Speech Recognition Lecture 8: Expectation-Maximization Algorithm, Hidden Markov Models.

Speech Recognition Lecture 8: Expectation-Maximization Algorithm, Hidden Markov Models. Speech Recognition Lecture 8: Expectation-Maximization Algorithm, Hidden Markov Models. Mehryar Mohri Courant Institute and Google Research mohri@cims.nyu.com This Lecture Expectation-Maximization (EM)

More information

Speech Recognition HMM

Speech Recognition HMM Speech Recognition HMM Jan Černocký, Valentina Hubeika {cernocky ihubeika}@fit.vutbr.cz FIT BUT Brno Speech Recognition HMM Jan Černocký, Valentina Hubeika, DCGM FIT BUT Brno 1/38 Agenda Recap variability

More information

Dynamic Programming: Hidden Markov Models

Dynamic Programming: Hidden Markov Models University of Oslo : Department of Informatics Dynamic Programming: Hidden Markov Models Rebecca Dridan 16 October 2013 INF4820: Algorithms for AI and NLP Topics Recap n-grams Parts-of-speech Hidden Markov

More information

CS 6140: Machine Learning Spring 2017

CS 6140: Machine Learning Spring 2017 CS 6140: Machine Learning Spring 2017 Instructor: Lu Wang College of Computer and Informa@on Science Northeastern University Webpage: www.ccs.neu.edu/home/luwang Email: luwang@ccs.neu.edu Logis@cs Assignment

More information

An Introduction to Bioinformatics Algorithms Hidden Markov Models

An Introduction to Bioinformatics Algorithms   Hidden Markov Models Hidden Markov Models Outline 1. CG-Islands 2. The Fair Bet Casino 3. Hidden Markov Model 4. Decoding Algorithm 5. Forward-Backward Algorithm 6. Profile HMMs 7. HMM Parameter Estimation 8. Viterbi Training

More information

HMM : Viterbi algorithm - a toy example

HMM : Viterbi algorithm - a toy example MM : Viterbi algorithm - a toy example 0.6 et's consider the following simple MM. This model is composed of 2 states, (high GC content) and (low GC content). We can for example consider that state characterizes

More information

Lab 3: Practical Hidden Markov Models (HMM)

Lab 3: Practical Hidden Markov Models (HMM) Advanced Topics in Bioinformatics Lab 3: Practical Hidden Markov Models () Maoying, Wu Department of Bioinformatics & Biostatistics Shanghai Jiao Tong University November 27, 2014 Hidden Markov Models

More information

Part A. P (w 1 )P (w 2 w 1 )P (w 3 w 1 w 2 ) P (w M w 1 w 2 w M 1 ) P (w 1 )P (w 2 w 1 )P (w 3 w 2 ) P (w M w M 1 )

Part A. P (w 1 )P (w 2 w 1 )P (w 3 w 1 w 2 ) P (w M w 1 w 2 w M 1 ) P (w 1 )P (w 2 w 1 )P (w 3 w 2 ) P (w M w M 1 ) Part A 1. A Markov chain is a discrete-time stochastic process, defined by a set of states, a set of transition probabilities (between states), and a set of initial state probabilities; the process proceeds

More information

Hidden Markov Models

Hidden Markov Models Hidden Markov Models Slides revised and adapted to Bioinformática 55 Engª Biomédica/IST 2005 Ana Teresa Freitas Forward Algorithm For Markov chains we calculate the probability of a sequence, P(x) How

More information