Boltzmann-Gibbs Preserving Langevin Integrators

Size: px
Start display at page:

Download "Boltzmann-Gibbs Preserving Langevin Integrators"

Transcription

1 Boltzmann-Gibbs Preserving Langevin Integrators Nawaf Bou-Rabee Applied and Comp. Math., Caltech INI Workshop on Markov-Chain Monte-Carlo Methods March 28, 2008

2 4000 atom cluster simulation

3 Governing Equations of 4000 atom cluster

4 Governing Equations of 4000 atom cluster Consider the Hamiltonian

5 Governing Equations of 4000 atom cluster Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q)

6 Governing Equations of 4000 atom cluster Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q) Langevin equations; C is symmetric

7 Governing Equations of 4000 atom cluster Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q) Langevin equations; C is symmetric dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw.

8 Scheme

9 Scheme BG-preserving SVI P 1/2 k = e ch p k h 2 q k+1 = q k + hp 1/2 k, p k+1 = P 1/2 k h 2 U q (q k)+ U q (q k+1). 1 e 2ch β ξ k,

10 c=8, T= atom cluster SVI instantaneous temperature

11 c=64, T= atom cluster SVI instantaneous temperature

12 c=512, T= atom cluster SVI instantaneous temperature

13 c=4096, T= atom cluster SVI instantaneous temperature

14 c=8, T= atom cluster LAMMPS instantaneous temperature

15 c=16, T= atom cluster LAMMPS instantaneous temperature

16 c=32, T= atom cluster LAMMPS instantaneous temperature

17 Unstable for c> atom cluster LAMMPS instantaneous temperature

18 Langevin Process

19 Langevin Process Consider the Hamiltonian

20 Langevin Process Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q)

21 Langevin Process Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q) Langevin equations; C is symmetric

22 Langevin Process Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q) Langevin equations; C is symmetric dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw.

23 Langevin Process Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q) Langevin equations; C is symmetric dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw. Hamiltonian

24 Langevin Process Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q) Langevin equations; C is symmetric dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw. Hamiltonian Dissipative

25 Langevin Process Consider the Hamiltonian H(q, p) = 1 2 pt M 1 p + U(q) Langevin equations; C is symmetric dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw. Hamiltonian Dissipative Diffusive

26 Langevin Process Langevin equations dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw.

27 Langevin Process Langevin equations dq = H p dt, dp = H q preserves BG measure: dt cc H p dt + σc1/2 dw.

28 Langevin Process Langevin equations dq = H p dt, dp = H q preserves BG measure: dt cc H p dt + σc1/2 dw. dµ = Z 1 π(q, p)dqdp = Z 1 exp ( βh(q, p)) dqdp Z = T Q π(q, p)dqdp

29 Langevin Process Langevin equations dq = H p dt, dp = H q preserves BG measure: dt cc H p dt + σc1/2 dw. dµ = Z 1 π(q, p)dqdp = Z 1 exp ( βh(q, p)) dqdp Z = T Q π(q, p)dqdp if C is definite equilibrium (q t,p t ) exponentially converges to

30 Splitting Technique Langevin Equations { dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw.

31 Splitting Technique Langevin Equations { dq = H p dt, dp = H q Divide and conquer dt cc H p dt + σc1/2 dw.

32 Splitting Technique Langevin Equations { dq = H p dt, dp = H q Divide and conquer { dq = 0 Ornstein- Uhlenbeck dt cc H p dt + σc1/2 dw. dp = cc H p dt + σc1/2 dw

33 Splitting Technique Langevin Equations { dq = H p dt, dp = H q Divide and conquer { dq = 0 Ornstein- Uhlenbeck Hamiltonian dt cc H p dt + σc1/2 dw. dp = cc H p dt + σc1/2 dw { dq = H p dt dp = H q dt

34 Hamiltonian { dq = H p dt dp = H q dt Apply a pth-order accurate symplectic integrator

35 Hamiltonian { dq = H p dt dp = H q dt Apply a pth-order accurate symplectic integrator θ h : T Q T Q

36 Hamiltonian { dq = H p dt dp = H q dt Apply a pth-order accurate symplectic integrator θ h : T Q T Q Recall, integrator is symplectic, i.e., θhω =Ω

37 Hamiltonian { dq = H p dt dp = H q dt

38 Hamiltonian { dq = H p dt dp = H q dt Using backward error analysis H(θh N one can show that (q, p)) H(q, p) γ(q, p)h p

39 Hamiltonian { dq = H p dt dp = H q dt Using backward error analysis H(θh N one can show that (q, p)) H(q, p) γ(q, p)h p energy error of a Q symplectic integrator remains bounded for exponentially long times t

40 { Ornstein- Uhlenbeck dq = 0 dp = cc H p dt + σc1/2 dw A linear SDE

41 { Ornstein- Uhlenbeck dq = 0 dp = cc H p dt + σc1/2 dw A linear SDE dp(t) = ccm 1 p(t)dt + σc 1/2 dw (t) p(0) = p,

42 { Ornstein- Uhlenbeck dq = 0 dp = cc H p dt + σc1/2 dw A linear SDE dp(t) = ccm 1 p(t)dt + σc 1/2 dw (t) p(0) = p, Solution p(t) = exp( ccm 1 t)p + σ t 0 exp( ccm 1 (t s))c 1/2 dw (s).

43 { Ornstein- Uhlenbeck dq = 0 dp = cc H p dt + σc1/2 dw A linear SDE dp(t) = ccm 1 p(t)dt + σc 1/2 dw (t) p(0) = p, Solution p(t) = exp( ccm 1 t)p + σ t 0 exp( ccm 1 (t s))c 1/2 dw (s). Define map ψ h :(q, p) (q, p(h)).

44 Ornstein-Uhlenbeck Process ψ h :(q, p) (q, p(h)).

45 Ornstein-Uhlenbeck Process ψ h :(q, p) (q, p(h)).

46 Ornstein-Uhlenbeck Process ψ h :(q, p) (q, p(h)). Properties:

47 Ornstein-Uhlenbeck Process ψ h :(q, p) (q, p(h)). Properties: preserves BG measure

48 Ornstein-Uhlenbeck Process ψ h :(q, p) (q, p(h)). Properties: preserves BG measure however, not even consistent with Langevin SDEs

49 Divide and Conquer

50 Divide and Conquer θ h : T Q T Q approximates { dq = H p dt dp = H q dt

51 Divide and Conquer θ h : T Q T Q approximates ψ h : T Q T Q solves { { dq = H p dt dp = H q dt dq = 0 dp = cc H p dt + σc1/2 dw

52 Divide and Conquer θ h : T Q T Q approximates ψ h : T Q T Q solves { { dq = H p dt dp = H q dt dq = 0 dp = cc H p dt + σc1/2 dw φ h = θ h ψ h approximates { dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw.

53 Divide and Conquer θ h : T Q T Q approximates ψ h : T Q T Q solves { { dq = H p dt dp = H q dt dq = 0 dp = cc H p dt + σc1/2 dw φ h = θ h ψ h approximates { dq = H p dt, dp = H q dt cc H p dt + σc1/2 dw. Remark: trivial to extend to manifolds

54 Composite Map φ h = θ h ψ h Recall mean-squared norm Y (x) ms = ( E [ Y (x) 2]) 1/2, Y : E E

55 Composite Map φ h = θ h ψ h Recall mean-squared norm Y (x) ms = ( E [ Y (x) 2]) 1/2, Y : E E First-order, mean-square convergent φ k h(q, p) ϕ tk (q, p) ms Ch.

56 Composite Map φ h = θ h ψ h Nearly preserves BG measure.

57 Composite Map φ h = θ h ψ h Nearly preserves BG measure. Define deviation from BG as N h : L 2 µ(t Q) R N h (f) = T Q E [ f(φ N h (q, p)) ] dµ T Q f(q, p)dµ

58 Composite Map φ h = θ h ψ h Nearly preserves BG measure. Define deviation from BG as N h : L 2 µ(t Q) R N h (f) = T Q E [ f(φ N h (q, p)) ] dµ T Q f(q, p)dµ Recall a Markov chain preserves a measure means N h (f) =0, f L 2 µ(t Q)

59 Composite Map φ h = θ h ψ h Theorem: Forward error of composite map satisfies

60 Composite Map φ h = θ h ψ h Theorem: Forward error of composite map satisfies (e ) N h (f) = f(q, p) β (H((θ N h ) 1 (q,p)) H(q,p)) 1 dµ. T Q

61 Composite Map φ h = θ h ψ h Theorem: Forward error of composite map satisfies (e ) N h (f) = f(q, p) β (H((θ N h ) 1 (q,p)) H(q,p)) 1 T Q dµ. change in energy of a symplectic integrator

62 Composite Map φ h = θ h ψ h Theorem: Forward error of composite map satisfies

63 Composite Map φ h = θ h ψ h Theorem: Forward error of composite map satisfies (e ) N h (f) = f(q, p) β (H((θ N h ) 1 (q,p)) H(q,p)) 1 dµ. T Q

64 Composite Map φ h = θ h ψ h Theorem: Forward error of composite map satisfies (e ) N h (f) = f(q, p) β (H((θ N h ) 1 (q,p)) H(q,p)) 1 T Q dµ. Corollary: (by long-time energy preservation) N h (f) e βmhp 1 sup f 1

65 Composite Map φ h = θ h ψ h Theorem: Forward error of composite map satisfies (e ) N h (f) = f(q, p) β (H((θ N h ) 1 (q,p)) H(q,p)) 1 T Q dµ. Corollary: (by long-time energy preservation) N h (f) e βmhp 1 Corollary: (by exponential convergence to equilibrium) E Ce λeh 0 /(2h) µ µ h TV E + Ce λeh 0 /(2h) E sup f 1 e βmhp 1

66 Boltzmann-Gibbs Preserving Integrator Define symplectic-energy-momentum integrator as in Kane, Marsden, and Ortiz [1999]

67 Boltzmann-Gibbs Preserving Integrator Define symplectic-energy-momentum integrator as in Kane, Marsden, and Ortiz [1999] θ hk : T Q T Q

68 Boltzmann-Gibbs Preserving Integrator Define symplectic-energy-momentum integrator as in Kane, Marsden, and Ortiz [1999] θ hk : T Q T Q Composite map φ hk = ψ hk θ hk

69 Boltzmann-Gibbs Preserving Integrator Define symplectic-energy-momentum integrator as in Kane, Marsden, and Ortiz [1999] θ hk : T Q T Q Composite map φ hk = ψ hk θ hk Langevin integrator (i.e., mean-squared convergent)

70 Boltzmann-Gibbs Preserving Integrator Define symplectic-energy-momentum integrator as in Kane, Marsden, and Ortiz [1999] θ hk : T Q T Q Composite map φ hk = ψ hk θ hk Langevin integrator (i.e., mean-squared convergent) exactly preserves BG measure

71 Preserving Conformal Symplecticity BG- Quasi- Symplecticity BG-SVI X X X LD-SVI X CS-SVI X X LAMMPS X

72 Cubic Oscillator c=2, T=1

73 Cubic Oscillator c=4, T=1

74 Cubic Oscillator c=8, T=1

75 Rare Event Simulation

76 For more information see:

Introduction to Hamiltonian Monte Carlo Method

Introduction to Hamiltonian Monte Carlo Method Introduction to Hamiltonian Monte Carlo Method Mingwei Tang Department of Statistics University of Washington mingwt@uw.edu November 14, 2017 1 Hamiltonian System Notation: q R d : position vector, p R

More information

Stochastic Variational Integrators

Stochastic Variational Integrators Stochastic Variational Integrators Jeremy Schmitt Variational integrators are numerical geometric integrator s derived from discretizing Hamilton s principle. They are symplectic integrators that exhibit

More information

Estimating Accuracy in Classical Molecular Simulation

Estimating Accuracy in Classical Molecular Simulation Estimating Accuracy in Classical Molecular Simulation University of Illinois Urbana-Champaign Department of Computer Science Institute for Mathematics and its Applications July 2007 Acknowledgements Ben

More information

Downloaded 07/22/13 to Redistribution subject to SIAM license or copyright; see

Downloaded 07/22/13 to Redistribution subject to SIAM license or copyright; see SIAM J. NUMER. ANAL. Vol. 48, No. 1, pp. 278 297 c 21 Society for Industrial and Applied Mathematics Downloaded 7/22/13 to 192.12.88.152. Redistribution subject to SIAM license or copyright; see http://www.siam.org/journals/ojsa.php

More information

Gradient-based Monte Carlo sampling methods

Gradient-based Monte Carlo sampling methods Gradient-based Monte Carlo sampling methods Johannes von Lindheim 31. May 016 Abstract Notes for a 90-minute presentation on gradient-based Monte Carlo sampling methods for the Uncertainty Quantification

More information

Hamiltonian flow in phase space and Liouville s theorem (Lecture 5)

Hamiltonian flow in phase space and Liouville s theorem (Lecture 5) Hamiltonian flow in phase space and Liouville s theorem (Lecture 5) January 26, 2016 90/441 Lecture outline We will discuss the Hamiltonian flow in the phase space. This flow represents a time dependent

More information

Monte Carlo in Bayesian Statistics

Monte Carlo in Bayesian Statistics Monte Carlo in Bayesian Statistics Matthew Thomas SAMBa - University of Bath m.l.thomas@bath.ac.uk December 4, 2014 Matthew Thomas (SAMBa) Monte Carlo in Bayesian Statistics December 4, 2014 1 / 16 Overview

More information

Effective dynamics for the (overdamped) Langevin equation

Effective dynamics for the (overdamped) Langevin equation Effective dynamics for the (overdamped) Langevin equation Frédéric Legoll ENPC and INRIA joint work with T. Lelièvre (ENPC and INRIA) Enumath conference, MS Numerical methods for molecular dynamics EnuMath

More information

Heat bath models for nonlinear partial differential equations Controlling statistical properties in extended dynamical systems

Heat bath models for nonlinear partial differential equations Controlling statistical properties in extended dynamical systems Heat bath models for nonlinear partial differential equations Controlling statistical properties in extended dynamical systems Ben Leimkuhler University of Edinburgh Funding: NAIS (EPSRC) & NWO MIGSEE

More information

Riemann Manifold Methods in Bayesian Statistics

Riemann Manifold Methods in Bayesian Statistics Ricardo Ehlers ehlers@icmc.usp.br Applied Maths and Stats University of São Paulo, Brazil Working Group in Statistical Learning University College Dublin September 2015 Bayesian inference is based on Bayes

More information

Hamiltonian flows, cotangent lifts, and momentum maps

Hamiltonian flows, cotangent lifts, and momentum maps Hamiltonian flows, cotangent lifts, and momentum maps Jordan Bell jordan.bell@gmail.com Department of Mathematics, University of Toronto April 3, 2014 1 Symplectic manifolds Let (M, ω) and (N, η) be symplectic

More information

Notes on symplectic geometry and group actions

Notes on symplectic geometry and group actions Notes on symplectic geometry and group actions Peter Hochs November 5, 2013 Contents 1 Example of Hamiltonian mechanics 1 2 Proper actions and Hausdorff quotients 4 3 N particles in R 3 7 4 Commuting actions

More information

CE 530 Molecular Simulation

CE 530 Molecular Simulation CE 530 Molecular Simulation Lecture Molecular Dynamics Simulation David A. Kofke Department of Chemical Engineering SUNY Buffalo kofke@eng.buffalo.edu MD of hard disks intuitive Review and Preview collision

More information

The Smoluchowski-Kramers Approximation: What model describes a Brownian particle?

The Smoluchowski-Kramers Approximation: What model describes a Brownian particle? The Smoluchowski-Kramers Approximation: What model describes a Brownian particle? Scott Hottovy shottovy@math.arizona.edu University of Arizona Applied Mathematics October 7, 2011 Brown observes a particle

More information

A Backward Particle Interpretation of Feynman-Kac Formulae

A Backward Particle Interpretation of Feynman-Kac Formulae A Backward Particle Interpretation of Feynman-Kac Formulae P. Del Moral Centre INRIA de Bordeaux - Sud Ouest Workshop on Filtering, Cambridge Univ., June 14-15th 2010 Preprints (with hyperlinks), joint

More information

Discrete Dirac Mechanics and Discrete Dirac Geometry

Discrete Dirac Mechanics and Discrete Dirac Geometry Discrete Dirac Mechanics and Discrete Dirac Geometry Melvin Leok Mathematics, University of California, San Diego Joint work with Anthony Bloch and Tomoki Ohsawa Geometric Numerical Integration Workshop,

More information

Computational Geometric Uncertainty Propagation for Hamiltonian Systems on a Lie Group

Computational Geometric Uncertainty Propagation for Hamiltonian Systems on a Lie Group Computational Geometric Uncertainty Propagation for Hamiltonian Systems on a Lie Group Melvin Leok Mathematics, University of California, San Diego Foundations of Dynamics Session, CDS@20 Workshop Caltech,

More information

Canonical transformations (Lecture 4)

Canonical transformations (Lecture 4) Canonical transformations (Lecture 4) January 26, 2016 61/441 Lecture outline We will introduce and discuss canonical transformations that conserve the Hamiltonian structure of equations of motion. Poisson

More information

Two recent works on molecular systems out of equilibrium

Two recent works on molecular systems out of equilibrium Two recent works on molecular systems out of equilibrium Frédéric Legoll ENPC and INRIA joint work with M. Dobson, T. Lelièvre, G. Stoltz (ENPC and INRIA), A. Iacobucci and S. Olla (Dauphine). CECAM workshop:

More information

Fluctuation theorem in systems in contact with different heath baths: theory and experiments.

Fluctuation theorem in systems in contact with different heath baths: theory and experiments. Fluctuation theorem in systems in contact with different heath baths: theory and experiments. Alberto Imparato Institut for Fysik og Astronomi Aarhus Universitet Denmark Workshop Advances in Nonequilibrium

More information

Physics 5153 Classical Mechanics. Canonical Transformations-1

Physics 5153 Classical Mechanics. Canonical Transformations-1 1 Introduction Physics 5153 Classical Mechanics Canonical Transformations The choice of generalized coordinates used to describe a physical system is completely arbitrary, but the Lagrangian is invariant

More information

Entropy and Large Deviations

Entropy and Large Deviations Entropy and Large Deviations p. 1/32 Entropy and Large Deviations S.R.S. Varadhan Courant Institute, NYU Michigan State Universiy East Lansing March 31, 2015 Entropy comes up in many different contexts.

More information

arxiv: v1 [math.pr] 14 Nov 2017

arxiv: v1 [math.pr] 14 Nov 2017 Acta Numerica (2018), pp. 1 92 c Cambridge University Press, 2018 doi:10.1017/s09624929 Printed in the United Kingdom arxiv:1711.05337v1 [math.pr] 14 Nov 2017 Geometric integrators and the Hamiltonian

More information

A Brief Introduction to Statistical Mechanics

A Brief Introduction to Statistical Mechanics A Brief Introduction to Statistical Mechanics E. J. Maginn, J. K. Shah Department of Chemical and Biomolecular Engineering University of Notre Dame Notre Dame, IN 46556 USA Monte Carlo Workshop Universidade

More information

Time-Dependent Statistical Mechanics 5. The classical atomic fluid, classical mechanics, and classical equilibrium statistical mechanics

Time-Dependent Statistical Mechanics 5. The classical atomic fluid, classical mechanics, and classical equilibrium statistical mechanics Time-Dependent Statistical Mechanics 5. The classical atomic fluid, classical mechanics, and classical equilibrium statistical mechanics c Hans C. Andersen October 1, 2009 While we know that in principle

More information

Chaotic motion. Phys 420/580 Lecture 10

Chaotic motion. Phys 420/580 Lecture 10 Chaotic motion Phys 420/580 Lecture 10 Finite-difference equations Finite difference equation approximates a differential equation as an iterative map (x n+1,v n+1 )=M[(x n,v n )] Evolution from time t

More information

Chaotic motion. Phys 750 Lecture 9

Chaotic motion. Phys 750 Lecture 9 Chaotic motion Phys 750 Lecture 9 Finite-difference equations Finite difference equation approximates a differential equation as an iterative map (x n+1,v n+1 )=M[(x n,v n )] Evolution from time t =0to

More information

Speeding up Convergence to Equilibrium for Diffusion Processes

Speeding up Convergence to Equilibrium for Diffusion Processes Speeding up Convergence to Equilibrium for Diffusion Processes G.A. Pavliotis Department of Mathematics Imperial College London Joint Work with T. Lelievre(CERMICS), F. Nier (CERMICS), M. Ottobre (Warwick),

More information

Random dynamical systems with microstructure

Random dynamical systems with microstructure Random dynamical systems with microstructure Renato Feres Washington University, St. Louis ESI, July 2011 1/37 Acknowledgements Different aspects of this work are joint with: Tim Chumley (Central limit

More information

The Microcanonical Approach. (a) The volume of accessible phase space for a given total energy is proportional to. dq 1 dq 2 dq N dp 1 dp 2 dp N,

The Microcanonical Approach. (a) The volume of accessible phase space for a given total energy is proportional to. dq 1 dq 2 dq N dp 1 dp 2 dp N, 8333: Statistical Mechanics I Problem Set # 6 Solutions Fall 003 Classical Harmonic Oscillators: The Microcanonical Approach a The volume of accessible phase space for a given total energy is proportional

More information

Basic math for biology

Basic math for biology Basic math for biology Lei Li Florida State University, Feb 6, 2002 The EM algorithm: setup Parametric models: {P θ }. Data: full data (Y, X); partial data Y. Missing data: X. Likelihood and maximum likelihood

More information

7.1 Coupling from the Past

7.1 Coupling from the Past Georgia Tech Fall 2006 Markov Chain Monte Carlo Methods Lecture 7: September 12, 2006 Coupling from the Past Eric Vigoda 7.1 Coupling from the Past 7.1.1 Introduction We saw in the last lecture how Markov

More information

EULER-LAGRANGE TO HAMILTON. The goal of these notes is to give one way of getting from the Euler-Lagrange equations to Hamilton s equations.

EULER-LAGRANGE TO HAMILTON. The goal of these notes is to give one way of getting from the Euler-Lagrange equations to Hamilton s equations. EULER-LAGRANGE TO HAMILTON LANCE D. DRAGER The goal of these notes is to give one way of getting from the Euler-Lagrange equations to Hamilton s equations. 1. Euler-Lagrange to Hamilton We will often write

More information

Caltech Ph106 Fall 2001

Caltech Ph106 Fall 2001 Caltech h106 Fall 2001 ath for physicists: differential forms Disclaimer: this is a first draft, so a few signs might be off. 1 Basic properties Differential forms come up in various parts of theoretical

More information

Variational integrators for electric and nonsmooth systems

Variational integrators for electric and nonsmooth systems Variational integrators for electric and nonsmooth systems Sina Ober-Blöbaum Control Group Department of Engineering Science University of Oxford Fellow of Harris Manchester College Summerschool Applied

More information

Dirac Structures and the Legendre Transformation for Implicit Lagrangian and Hamiltonian Systems

Dirac Structures and the Legendre Transformation for Implicit Lagrangian and Hamiltonian Systems Dirac Structures and the Legendre Transformation for Implicit Lagrangian and Hamiltonian Systems Hiroaki Yoshimura Mechanical Engineering, Waseda University Tokyo, Japan Joint Work with Jerrold E. Marsden

More information

Discretizations of Lagrangian Mechanics

Discretizations of Lagrangian Mechanics Discretizations of Lagrangian Mechanics George W. Patrick Applied Mathematics and Mathematical Physics Mathematics and Statistics, University of Saskatchewan, Canada August 2007 With Charles Cuell Discretizations

More information

Harnack Inequalities and Applications for Stochastic Equations

Harnack Inequalities and Applications for Stochastic Equations p. 1/32 Harnack Inequalities and Applications for Stochastic Equations PhD Thesis Defense Shun-Xiang Ouyang Under the Supervision of Prof. Michael Röckner & Prof. Feng-Yu Wang March 6, 29 p. 2/32 Outline

More information

Hopping transport in disordered solids

Hopping transport in disordered solids Hopping transport in disordered solids Dominique Spehner Institut Fourier, Grenoble, France Workshop on Quantum Transport, Lexington, March 17, 2006 p. 1 Outline of the talk Hopping transport Models for

More information

Large Fluctuations in Chaotic Systems

Large Fluctuations in Chaotic Systems Large Fluctuations in in Chaotic Systems Igor Khovanov Physics Department, Lancaster University V.S. Anishchenko, Saratov State University N.A. Khovanova, D.G. Luchinsky, P.V.E. McClintock, Lancaster University

More information

Synchro-Betatron Motion in Circular Accelerators

Synchro-Betatron Motion in Circular Accelerators Outlines Synchro-Betatron Motion in Circular Accelerators Kevin Li March 30, 2011 Kevin Li Synchro-Betatron Motion 1/ 70 Outline of Part I Outlines Part I: and Model Introduction Part II: The Transverse

More information

3.320 Lecture 18 (4/12/05)

3.320 Lecture 18 (4/12/05) 3.320 Lecture 18 (4/12/05) Monte Carlo Simulation II and free energies Figure by MIT OCW. General Statistical Mechanics References D. Chandler, Introduction to Modern Statistical Mechanics D.A. McQuarrie,

More information

Lecture 11 : Overview

Lecture 11 : Overview Lecture 11 : Overview Error in Assignment 3 : In Eq. 1, Hamiltonian should be H = p2 r 2m + p2 ϕ 2mr + (p z ea z ) 2 2 2m + eφ (1) Error in lecture 10, slide 7, Eq. (21). Should be S(q, α, t) m Q = β =

More information

Wave Packet Representation of Semiclassical Time Evolution in Quantum Mechanics

Wave Packet Representation of Semiclassical Time Evolution in Quantum Mechanics Wave Packet Representation of Semiclassical Time Evolution in Quantum Mechanics Panos Karageorge, George Makrakis ACMAC Dept. of Applied Mathematics, University of Crete Semiclassical & Multiscale Aspects

More information

Intertwinings for Markov processes

Intertwinings for Markov processes Intertwinings for Markov processes Aldéric Joulin - University of Toulouse Joint work with : Michel Bonnefont - Univ. Bordeaux Workshop 2 Piecewise Deterministic Markov Processes ennes - May 15-17, 2013

More information

Preface On August 15, 2012, I received the following email message from Ryan Budney (ryan.budney@gmail.com). Hi Dick, Here s an MO post that s right up your alley. :) http://mathoverflow.net/questions/104750/about-a-letter-by-richard-palais-of-1965

More information

Controlling Mechanical Systems by Active Constraints. Alberto Bressan. Department of Mathematics, Penn State University

Controlling Mechanical Systems by Active Constraints. Alberto Bressan. Department of Mathematics, Penn State University Controlling Mechanical Systems by Active Constraints Alberto Bressan Department of Mathematics, Penn State University 1 Control of Mechanical Systems: Two approaches by applying external forces by directly

More information

Stochastic Behavior of Dissipative Hamiltonian Systems with Limit Cycles

Stochastic Behavior of Dissipative Hamiltonian Systems with Limit Cycles Stochastic Behavior of Dissipative Hamiltonian Systems with Limit Cycles Wolfgang Mathis Florian Richter Richard Mathis Institut für Theoretische Elektrotechnik, Gottfried Wilhelm Leibniz Universität Hannover,

More information

Linear Response Theory, The Green-Kubo formula and Langevin Dynamics

Linear Response Theory, The Green-Kubo formula and Langevin Dynamics Linear Response Theory, The Green-Kubo formula and Langevin Dynamics G.A. Pavliotis Department of Mathematics Imperial College London 07/07/2015 G.A. Pavliotis (IC London) Linear Response Theory 1 / 64

More information

Mean field simulation for Monte Carlo integration. Part II : Feynman-Kac models. P. Del Moral

Mean field simulation for Monte Carlo integration. Part II : Feynman-Kac models. P. Del Moral Mean field simulation for Monte Carlo integration Part II : Feynman-Kac models P. Del Moral INRIA Bordeaux & Inst. Maths. Bordeaux & CMAP Polytechnique Lectures, INLN CNRS & Nice Sophia Antipolis Univ.

More information

Homework 4. Goldstein 9.7. Part (a) Theoretical Dynamics October 01, 2010 (1) P i = F 1. Q i. p i = F 1 (3) q i (5) P i (6)

Homework 4. Goldstein 9.7. Part (a) Theoretical Dynamics October 01, 2010 (1) P i = F 1. Q i. p i = F 1 (3) q i (5) P i (6) Theoretical Dynamics October 01, 2010 Instructor: Dr. Thomas Cohen Homework 4 Submitted by: Vivek Saxena Goldstein 9.7 Part (a) F 1 (q, Q, t) F 2 (q, P, t) P i F 1 Q i (1) F 2 (q, P, t) F 1 (q, Q, t) +

More information

Handout 10. Applications to Solids

Handout 10. Applications to Solids ME346A Introduction to Statistical Mechanics Wei Cai Stanford University Win 2011 Handout 10. Applications to Solids February 23, 2011 Contents 1 Average kinetic and potential energy 2 2 Virial theorem

More information

Downloaded 07/28/14 to Redistribution subject to SIAM license or copyright; see

Downloaded 07/28/14 to Redistribution subject to SIAM license or copyright; see SIAM J. SCI. COMPUT. Vol. 36, No. 4, pp. A1556 A1580 c 2014 Society for Industrial and Applied Mathematics NUMERICAL INTEGRATORS FOR THE HYBRID MONTE CARLO METHOD SERGIO BLANES, FERNANDO CASAS, AND J.

More information

Properties for systems with weak invariant manifolds

Properties for systems with weak invariant manifolds Statistical properties for systems with weak invariant manifolds Faculdade de Ciências da Universidade do Porto Joint work with José F. Alves Workshop rare & extreme Gibbs-Markov-Young structure Let M

More information

GSHMC: An efficient Markov chain Monte Carlo sampling method. Sebastian Reich in collaboration with Elena Akhmatskaya (Fujitsu Laboratories Europe)

GSHMC: An efficient Markov chain Monte Carlo sampling method. Sebastian Reich in collaboration with Elena Akhmatskaya (Fujitsu Laboratories Europe) GSHMC: An efficient Markov chain Monte Carlo sampling method Sebastian Reich in collaboration with Elena Akhmatskaya (Fujitsu Laboratories Europe) 1. Motivation In the first lecture, we started from a

More information

Mesoscale Simulation Methods. Ronojoy Adhikari The Institute of Mathematical Sciences Chennai

Mesoscale Simulation Methods. Ronojoy Adhikari The Institute of Mathematical Sciences Chennai Mesoscale Simulation Methods Ronojoy Adhikari The Institute of Mathematical Sciences Chennai Outline What is mesoscale? Mesoscale statics and dynamics through coarse-graining. Coarse-grained equations

More information

Stochastic Hamiltonian systems and reduction

Stochastic Hamiltonian systems and reduction Stochastic Hamiltonian systems and reduction Joan Andreu Lázaro Universidad de Zaragoza Juan Pablo Ortega CNRS, Besançon Geometric Mechanics: Continuous and discrete, nite and in nite dimensional Ban,

More information

Markovian Approximation and Linear Response Theory for Classical Open Systems

Markovian Approximation and Linear Response Theory for Classical Open Systems Markovian Approximation and Linear Response Theory for Classical Open Systems G.A. Pavliotis INRIA-MICMAC Project Team and Department of Mathematics Imperial College London Lecture 1 09/11/2011 Lecture

More information

Ambient space formulations and statistical mechanics of holonomically constrained Langevin systems

Ambient space formulations and statistical mechanics of holonomically constrained Langevin systems EPJ manuscript No. (will be inserted by the editor) Ambient space formulations and statistical mechanics of holonomically constrained Langevin systems Jessika Walter 1,a, Carsten Hartmann 2,b, and John

More information

The Geometry of Euler s equation. Introduction

The Geometry of Euler s equation. Introduction The Geometry of Euler s equation Introduction Part 1 Mechanical systems with constraints, symmetries flexible joint fixed length In principle can be dealt with by applying F=ma, but this can become complicated

More information

Computing ergodic limits for SDEs

Computing ergodic limits for SDEs Computing ergodic limits for SDEs M.V. Tretyakov School of Mathematical Sciences, University of Nottingham, UK Talk at the workshop Stochastic numerical algorithms, multiscale modelling and high-dimensional

More information

Quantitative Model Checking (QMC) - SS12

Quantitative Model Checking (QMC) - SS12 Quantitative Model Checking (QMC) - SS12 Lecture 06 David Spieler Saarland University, Germany June 4, 2012 1 / 34 Deciding Bisimulations 2 / 34 Partition Refinement Algorithm Notation: A partition P over

More information

Robust control and applications in economic theory

Robust control and applications in economic theory Robust control and applications in economic theory In honour of Professor Emeritus Grigoris Kalogeropoulos on the occasion of his retirement A. N. Yannacopoulos Department of Statistics AUEB 24 May 2013

More information

Algorithms for Ensemble Control. B Leimkuhler University of Edinburgh

Algorithms for Ensemble Control. B Leimkuhler University of Edinburgh Algorithms for Ensemble Control B Leimkuhler University of Edinburgh Model Reduction Across Disciplines Leicester 2014 (Stochastic) Ensemble Control extended ODE/SDE system design target ensemble SDE invariant

More information

Lecture 12: Detailed balance and Eigenfunction methods

Lecture 12: Detailed balance and Eigenfunction methods Miranda Holmes-Cerfon Applied Stochastic Analysis, Spring 2015 Lecture 12: Detailed balance and Eigenfunction methods Readings Recommended: Pavliotis [2014] 4.5-4.7 (eigenfunction methods and reversibility),

More information

On the holonomy fibration

On the holonomy fibration based on work with Alejandro Cabrera and Marco Gualtieri Workshop on Geometric Quantization Adelaide, July 2015 Introduction General theme: Hamiltonian LG-spaces q-hamiltonian G-spaces M Ψ Lg /L 0 G /L

More information

Assignment 8. [η j, η k ] = J jk

Assignment 8. [η j, η k ] = J jk Assignment 8 Goldstein 9.8 Prove directly that the transformation is canonical and find a generating function. Q 1 = q 1, P 1 = p 1 p Q = p, P = q 1 q We can establish that the transformation is canonical

More information

Quantum Hydrodynamics models derived from the entropy principle

Quantum Hydrodynamics models derived from the entropy principle 1 Quantum Hydrodynamics models derived from the entropy principle P. Degond (1), Ch. Ringhofer (2) (1) MIP, CNRS and Université Paul Sabatier, 118 route de Narbonne, 31062 Toulouse cedex, France degond@mip.ups-tlse.fr

More information

Turbulent Flows. g u

Turbulent Flows. g u .4 g u.3.2.1 t. 6 4 2 2 4 6 Figure 12.1: Effect of diffusion on PDF shape: solution to Eq. (12.29) for Dt =,.2,.2, 1. The dashed line is the Gaussian with the same mean () and variance (3) as the PDF at

More information

High performance computing and numerical modeling

High performance computing and numerical modeling High performance computing and numerical modeling Volker Springel Plan for my lectures Lecture 1: Collisional and collisionless N-body dynamics Lecture 2: Gravitational force calculation Lecture 3: Basic

More information

MARKOV CHAIN MONTE CARLO AND IRREVERSIBILITY

MARKOV CHAIN MONTE CARLO AND IRREVERSIBILITY MARKOV CHAIN MONTE CARLO AND IRREVERSIBILITY M. OTTOBRE Abstract. Markov Chain Monte Carlo (MCMC) methods are statistical methods designed to sample from a given measure π by constructing a Markov Chain

More information

Lecture 18 Stable Manifold Theorem

Lecture 18 Stable Manifold Theorem Lecture 18 Stable Manifold Theorem March 4, 2008 Theorem 0.1 (Stable Manifold Theorem) Let f diff k (M) and Λ be a hyperbolic set for f with hyperbolic constants λ (0, 1) and C 1. Then there exists an

More information

Lecture 4: Entropy. Chapter I. Basic Principles of Stat Mechanics. A.G. Petukhov, PHYS 743. September 7, 2017

Lecture 4: Entropy. Chapter I. Basic Principles of Stat Mechanics. A.G. Petukhov, PHYS 743. September 7, 2017 Lecture 4: Entropy Chapter I. Basic Principles of Stat Mechanics A.G. Petukhov, PHYS 743 September 7, 2017 Chapter I. Basic Principles of Stat Mechanics A.G. Petukhov, Lecture PHYS4: 743 Entropy September

More information

Accurate approximation of stochastic differential equations

Accurate approximation of stochastic differential equations Accurate approximation of stochastic differential equations Simon J.A. Malham and Anke Wiese (Heriot Watt University, Edinburgh) Birmingham: 6th February 29 Stochastic differential equations dy t = V (y

More information

Math 312 Lecture Notes Linear Two-dimensional Systems of Differential Equations

Math 312 Lecture Notes Linear Two-dimensional Systems of Differential Equations Math 2 Lecture Notes Linear Two-dimensional Systems of Differential Equations Warren Weckesser Department of Mathematics Colgate University February 2005 In these notes, we consider the linear system of

More information

A Short Introduction to Diffusion Processes and Ito Calculus

A Short Introduction to Diffusion Processes and Ito Calculus A Short Introduction to Diffusion Processes and Ito Calculus Cédric Archambeau University College, London Center for Computational Statistics and Machine Learning c.archambeau@cs.ucl.ac.uk January 24,

More information

Incomplete exponential sums over finite fields and their applications to new inversive pseudorandom number generators

Incomplete exponential sums over finite fields and their applications to new inversive pseudorandom number generators ACTA ARITHMETICA XCIII.4 (2000 Incomplete exponential sums over finite fields and their applications to new inversive pseudorandom number generators by Harald Niederreiter and Arne Winterhof (Wien 1. Introduction.

More information

The tree-valued Fleming-Viot process with mutation and selection

The tree-valued Fleming-Viot process with mutation and selection The tree-valued Fleming-Viot process with mutation and selection Peter Pfaffelhuber University of Freiburg Joint work with Andrej Depperschmidt and Andreas Greven Population genetic models Populations

More information

Statistical mechanics of random billiard systems

Statistical mechanics of random billiard systems Statistical mechanics of random billiard systems Renato Feres Washington University, St. Louis Banff, August 2014 1 / 39 Acknowledgements Collaborators: Timothy Chumley, U. of Iowa Scott Cook, Swarthmore

More information

1 Geometry of high dimensional probability distributions

1 Geometry of high dimensional probability distributions Hamiltonian Monte Carlo October 20, 2018 Debdeep Pati References: Neal, Radford M. MCMC using Hamiltonian dynamics. Handbook of Markov Chain Monte Carlo 2.11 (2011): 2. Betancourt, Michael. A conceptual

More information

A GENTLE STOCHASTIC THERMOSTAT FOR MOLECULAR DYNAMICS

A GENTLE STOCHASTIC THERMOSTAT FOR MOLECULAR DYNAMICS A GENTLE STOCHASTIC THERMOSTAT FOR MOLECULAR DYNAMICS BEN LEIMKUHLER, EMAD NOORIZADEH, AND FLORIAN THEIL Abstract. We discuss a dynamical technique for sampling the canonical measure in molecular dynamics.

More information

arxiv: v7 [quant-ph] 22 Aug 2017

arxiv: v7 [quant-ph] 22 Aug 2017 Quantum Mechanics with a non-zero quantum correlation time Jean-Philippe Bouchaud 1 1 Capital Fund Management, rue de l Université, 75007 Paris, France. (Dated: October 8, 018) arxiv:170.00771v7 [quant-ph]

More information

The Atiyah bundle and connections on a principal bundle

The Atiyah bundle and connections on a principal bundle Proc. Indian Acad. Sci. (Math. Sci.) Vol. 120, No. 3, June 2010, pp. 299 316. Indian Academy of Sciences The Atiyah bundle and connections on a principal bundle INDRANIL BISWAS School of Mathematics, Tata

More information

Theory and applications of random Poincaré maps

Theory and applications of random Poincaré maps Nils Berglund nils.berglund@univ-orleans.fr http://www.univ-orleans.fr/mapmo/membres/berglund/ Random Dynamical Systems Theory and applications of random Poincaré maps Nils Berglund MAPMO, Université d'orléans,

More information

Rigorous Functional Integration with Applications to Nelson s and the Pauli-Fierz Model

Rigorous Functional Integration with Applications to Nelson s and the Pauli-Fierz Model Rigorous Functional Integration with Applications to Nelson s and the Pauli-Fierz Model József Lőrinczi Zentrum Mathematik, Technische Universität München and School of Mathematics, Loughborough University

More information

Importance splitting for rare event simulation

Importance splitting for rare event simulation Importance splitting for rare event simulation F. Cerou Frederic.Cerou@inria.fr Inria Rennes Bretagne Atlantique Simulation of hybrid dynamical systems and applications to molecular dynamics September

More information

Chapter 2: First Order DE 2.4 Linear vs. Nonlinear DEs

Chapter 2: First Order DE 2.4 Linear vs. Nonlinear DEs Chapter 2: First Order DE 2.4 Linear vs. Nonlinear DEs First Order DE 2.4 Linear vs. Nonlinear DE We recall the general form of the First Oreder DEs (FODE): dy = f(t, y) (1) dt where f(t, y) is a function

More information

9.1 System in contact with a heat reservoir

9.1 System in contact with a heat reservoir Chapter 9 Canonical ensemble 9. System in contact with a heat reservoir We consider a small system A characterized by E, V and N in thermal interaction with a heat reservoir A 2 characterized by E 2, V

More information

arxiv: v2 [physics.comp-ph] 24 Apr 2013

arxiv: v2 [physics.comp-ph] 24 Apr 2013 Robust and efficient configurational molecular sampling via Langevin Dynamics Benedict Leimkuhler and Charles Matthews School of Mathematics and Maxwell Institute of Mathematical Sciences, James Clerk

More information

macroscopic view (phenomenological) microscopic view (atomistic) computing reaction rate rate of reactions experiments thermodynamics

macroscopic view (phenomenological) microscopic view (atomistic) computing reaction rate rate of reactions experiments thermodynamics Rate heory (overview) macroscopic view (phenomenological) rate of reactions experiments thermodynamics Van t Hoff & Arrhenius equation microscopic view (atomistic) statistical mechanics transition state

More information

Lecture 1: Pragmatic Introduction to Stochastic Differential Equations

Lecture 1: Pragmatic Introduction to Stochastic Differential Equations Lecture 1: Pragmatic Introduction to Stochastic Differential Equations Simo Särkkä Aalto University, Finland (visiting at Oxford University, UK) November 13, 2013 Simo Särkkä (Aalto) Lecture 1: Pragmatic

More information

Mix & Match Hamiltonian Monte Carlo

Mix & Match Hamiltonian Monte Carlo Mix & Match Hamiltonian Monte Carlo Elena Akhmatskaya,2 and Tijana Radivojević BCAM - Basque Center for Applied Mathematics, Bilbao, Spain 2 IKERBASQUE, Basque Foundation for Science, Bilbao, Spain MCMSki

More information

Backward Stochastic Differential Equations with Infinite Time Horizon

Backward Stochastic Differential Equations with Infinite Time Horizon Backward Stochastic Differential Equations with Infinite Time Horizon Holger Metzler PhD advisor: Prof. G. Tessitore Università di Milano-Bicocca Spring School Stochastic Control in Finance Roscoff, March

More information

Enhanced sampling via molecular dynamics II: Unbiased approaches

Enhanced sampling via molecular dynamics II: Unbiased approaches Enhanced sampling via molecular dynamics II: Unbiased approaches Mark E. Tuckerman Dept. of Chemistry and Courant Institute of Mathematical Sciences New York University, 100 Washington Square East, NY

More information

arxiv: v2 [math.pr] 22 Apr 2016

arxiv: v2 [math.pr] 22 Apr 2016 GEOMETRIC ERGODICITY OF TWO DIMENSIONAL HAMILTONIAN SYSTEMS WITH A LENNARD JONES LIKE REPULSIVE POTENTIAL arxiv:4.384v [math.pr] Apr 6 BEN COOKE, DAVID P. HERZOG, JONATHAN C. MATTINGLY, SCOTT A. MCKINLEY,

More information

Chapter 1 Symplectic Integrator and Beam Dynamics Simulations

Chapter 1 Symplectic Integrator and Beam Dynamics Simulations Chapter 1 and Beam Accelerator Physics Group, Journal Club November 9, 2010 and Beam NSLS-II Brookhaven National Laboratory 1.1 (70) Big Picture for Numerical Accelerator Physics and Beam For single particle

More information

1. Introductory Examples

1. Introductory Examples 1. Introductory Examples We introduce the concept of the deterministic and stochastic simulation methods. Two problems are provided to explain the methods: the percolation problem, providing an example

More information

Lecture 8 Phase Space, Part 2. 1 Surfaces of section. MATH-GA Mechanics

Lecture 8 Phase Space, Part 2. 1 Surfaces of section. MATH-GA Mechanics Lecture 8 Phase Space, Part 2 MATH-GA 2710.001 Mechanics 1 Surfaces of section Thus far, we have highlighted the value of phase portraits, and seen that valuable information can be extracted by looking

More information

Statistical Mechanics of Active Matter

Statistical Mechanics of Active Matter Statistical Mechanics of Active Matter Umberto Marini Bettolo Marconi University of Camerino, Italy Naples, 24 May,2017 Umberto Marini Bettolo Marconi (2017) Statistical Mechanics of Active Matter 2017

More information

An Introduction to Malliavin calculus and its applications

An Introduction to Malliavin calculus and its applications An Introduction to Malliavin calculus and its applications Lecture 3: Clark-Ocone formula David Nualart Department of Mathematics Kansas University University of Wyoming Summer School 214 David Nualart

More information