Principal Component Analysis
|
|
- April Waters
- 5 years ago
- Views:
Transcription
1 I.T. Jolliffe Principal Component Analysis Second Edition With 28 Illustrations Springer
2 Contents Preface to the Second Edition Preface to the First Edition Acknowledgments List of Figures List of Tables v ix xv xxiii xxvii 1 Introduction Definition and Derivation of Principal Components A Brief History of Principal Component Analysis Properties of Population Principal Components Optimal Algebraic Properties of Population Principal Components Geometric Properties of Population Principal Components Principal Components Using a Correlation Matrix Principal Components with Equal and/or Zero Variances 27 3 Properties of Sample Principal Components Optimal Algebraic Properties of Sample Principal Components Geometric Properties of Sample Principal Components Covariance and Correlation Matrices: An Example Principal Components with Equal and/or Zero Variances 43
3 xviii Contents Example The Singular Value Decomposition Probability Distributions for Sample Principal Components Inference Based on Sample Principal Components Point Estimation Interval Estimation Hypothesis Testing Patterned Covariance and Correlation Matrices Example Models for Principal Component Analysis 59 4 Interpreting Principal Components: Examples Anatomical Measurements The Elderly at Home Spatial and Temporal Variation in Atmospheric Science Properties of Chemical Compounds Stock Market Prices 76 5 Graphical Representation of Data Using Principal Components Plotting Two or Three Principal Components Examples Principal Coordinate Analysis Biplots Examples Variations on the Biplot Correspondence Analysis Example Comparisons Between Principal Components and other Methods Displaying Intrinsically High-Dimensional Data Example Choosing a Subset of Principal Components or Variables How Many Principal Components? Cumulative Percentage of Total Variation Size of Variances of Principal Components The Scree Graph and the Log-Eigenvalue Diagram The Number of Components with Unequal Eigenvalues and Other Hypothesis Testing Procedures Choice of m Using Cross-Validatory or Computationally Intensive Methods Partial Correlation Rules for an Atmospheric Science Context Discussion 130
4 Contents xix 6.2 Choosing m, the Number of Components: Examples Clinical Trials Blood Chemistry Gas Chromatography Data Selecting a Subset of Variables Examples Illustrating Variable Selection Alate adelges (Winged Aphids) Crime Rates Principal Component Analysis and Factor Analysis Models for Factor Analysis Estimation of the Factor Model Comparisons Between Factor and Principal Component Analysis An Example of Factor Analysis Concluding Remarks Principal Components in Regression Analysis Principal Component Regression Selecting Components in Principal Component Regression Connections Between PC Regression and Other Methods Variations on Principal Component Regression Variable Selection in Regression Using Principal Components Functional and Structural Relationships Examples of Principal Components in Regression Pitprop Data Household Formation Data Principal Components Used with Other Multivariate Techniques Discriminant Analysis Cluster Analysis Examples Projection Pursuit Mixture Models Canonical Correlation Analysis and Related Techniques Canonical Correlation Analysis Example of CCA Maximum Covariance Analysis (SVD Analysis), Redundancy Analysis and Principal Predictors Other Techniques for Relating Two Sets of Variables 228
5 xx Contents 10 Outlier Detection, Influential Observations and Robust Estimation Detection of Outliers Using Principal Components Examples Influential Observations in a Principal Component Analysis Examples Sensitivity and Stability Robust Estimation of Principal Components Concluding Remarks Rotation and Interpretation of Principal Components Rotation of Principal Components Examples One-step Procedures Using Simplicity Criteria Alternatives to Rotation Components with Discrete-Valued Coefficients Components Based on the LASSO Empirical Orthogonal Teleconnections Some Comparisons Simplified Approximations to Principal Components Principal Components with Homogeneous, Contrast and Sparsity Constraints Physical Interpretation of Principal Components PCA for Time Series and Other Non-independent Data Introduction PCA and Atmospheric Time Series Singular Spectrum Analysis (SSA) Principal Oscillation Pattern (POP) Analysis Hilbert (Complex) EOFs Multitaper Frequency Domain-Singular Value Decomposition (MTM SVD) Cyclo-Stationary and Periodically Extended EOFs (and POPs) Examples and Comparisons Functional PCA The Basics of Functional PCA (FPCA) Calculating Functional PCs (FPCs) Example km Running Data Further Topics in FPCA PCA and Non-independent Data Some Additional Topics PCA in the Frequency Domain Growth Curves and Longitudinal Data Climate Change Fingerprint Techniques Spatial Data Other Aspects of Non-independent Data and PCA 335
6 Contents xxi 13 Principal Component Analysis for Special Types of Data Principal Component Analysis for Discrete Data Analysis of Size and Shape Principal Component Analysis for Compositional Data Example: 100 km Running Data Principal Component Analysis in Designed Experiments Common Principal Components Principal Component Analysis in the Presence of Missing Data PCA in Statistical Process Control Some Other Types of Data Generalizations and Adaptations of Principal Component Analysis Non-Linear Extensions of Principal Component Analysis Non-Linear Multivariate Data Analysis Gifi and Related Approaches Additive Principal Components and Principal Curves Non-Linearity Using Neural Networks Other Aspects of Non-Linearity Weights, Metrics, Transformations and Centerings Weights Metrics Transformations and Centering PCs in the Presence of Secondary or Instrumental Variables PCA for Non-Normal Distributions Independent Component Analysis Three-Mode, Multiway and Multiple Group PCA Miscellanea Principal Components and Neural Networks Principal Components for Goodness-of-Fit Statistics Regression Components, Sweep-out Components and Extended Components Subjective Principal Components Concluding Remarks 405 A Computation of Principal Components 407 A.I Numerical Calculation of Principal Components 408 Index 458 Author Index 478
Multivariate Statistics (I) 2. Principal Component Analysis (PCA)
Multivariate Statistics (I) 2. Principal Component Analysis (PCA) 2.1 Comprehension of PCA 2.2 Concepts of PCs 2.3 Algebraic derivation of PCs 2.4 Selection and goodness-of-fit of PCs 2.5 Algebraic derivation
More informationWiley. Methods and Applications of Linear Models. Regression and the Analysis. of Variance. Third Edition. Ishpeming, Michigan RONALD R.
Methods and Applications of Linear Models Regression and the Analysis of Variance Third Edition RONALD R. HOCKING PenHock Statistical Consultants Ishpeming, Michigan Wiley Contents Preface to the Third
More informationPreface to Second Edition... vii. Preface to First Edition...
Contents Preface to Second Edition..................................... vii Preface to First Edition....................................... ix Part I Linear Algebra 1 Basic Vector/Matrix Structure and
More informationLinear Models 1. Isfahan University of Technology Fall Semester, 2014
Linear Models 1 Isfahan University of Technology Fall Semester, 2014 References: [1] G. A. F., Seber and A. J. Lee (2003). Linear Regression Analysis (2nd ed.). Hoboken, NJ: Wiley. [2] A. C. Rencher and
More informationVector Space Models. wine_spectral.r
Vector Space Models 137 wine_spectral.r Latent Semantic Analysis Problem with words Even a small vocabulary as in wine example is challenging LSA Reduce number of columns of DTM by principal components
More informationExperimental Design and Data Analysis for Biologists
Experimental Design and Data Analysis for Biologists Gerry P. Quinn Monash University Michael J. Keough University of Melbourne CAMBRIDGE UNIVERSITY PRESS Contents Preface page xv I I Introduction 1 1.1
More informationA User's Guide To Principal Components
A User's Guide To Principal Components J. EDWARD JACKSON A Wiley-Interscience Publication JOHN WILEY & SONS, INC. New York Chichester Brisbane Toronto Singapore Contents Preface Introduction 1. Getting
More informationWolfgang Karl Härdle Leopold Simar. Applied Multivariate. Statistical Analysis. Fourth Edition. ö Springer
Wolfgang Karl Härdle Leopold Simar Applied Multivariate Statistical Analysis Fourth Edition ö Springer Contents Part I Descriptive Techniques 1 Comparison of Batches 3 1.1 Boxplots 4 1.2 Histograms 11
More informationLecture 13. Principal Component Analysis. Brett Bernstein. April 25, CDS at NYU. Brett Bernstein (CDS at NYU) Lecture 13 April 25, / 26
Principal Component Analysis Brett Bernstein CDS at NYU April 25, 2017 Brett Bernstein (CDS at NYU) Lecture 13 April 25, 2017 1 / 26 Initial Question Intro Question Question Let S R n n be symmetric. 1
More informationAn Introduction to Multivariate Statistical Analysis
An Introduction to Multivariate Statistical Analysis Third Edition T. W. ANDERSON Stanford University Department of Statistics Stanford, CA WILEY- INTERSCIENCE A JOHN WILEY & SONS, INC., PUBLICATION Contents
More informationIntroduction to Machine Learning. PCA and Spectral Clustering. Introduction to Machine Learning, Slides: Eran Halperin
1 Introduction to Machine Learning PCA and Spectral Clustering Introduction to Machine Learning, 2013-14 Slides: Eran Halperin Singular Value Decomposition (SVD) The singular value decomposition (SVD)
More informationApplied Multivariate Statistical Analysis Richard Johnson Dean Wichern Sixth Edition
Applied Multivariate Statistical Analysis Richard Johnson Dean Wichern Sixth Edition Pearson Education Limited Edinburgh Gate Harlow Essex CM20 2JE England and Associated Companies throughout the world
More informationPrincipal Component Analysis. Applied Multivariate Statistics Spring 2012
Principal Component Analysis Applied Multivariate Statistics Spring 2012 Overview Intuition Four definitions Practical examples Mathematical example Case study 2 PCA: Goals Goal 1: Dimension reduction
More informationTime Series: Theory and Methods
Peter J. Brockwell Richard A. Davis Time Series: Theory and Methods Second Edition With 124 Illustrations Springer Contents Preface to the Second Edition Preface to the First Edition vn ix CHAPTER 1 Stationary
More informationPrincipal Components Analysis. Sargur Srihari University at Buffalo
Principal Components Analysis Sargur Srihari University at Buffalo 1 Topics Projection Pursuit Methods Principal Components Examples of using PCA Graphical use of PCA Multidimensional Scaling Srihari 2
More informationsphericity, 5-29, 5-32 residuals, 7-1 spread and level, 2-17 t test, 1-13 transformations, 2-15 violations, 1-19
additive tree structure, 10-28 ADDTREE, 10-51, 10-53 EXTREE, 10-31 four point condition, 10-29 ADDTREE, 10-28, 10-51, 10-53 adjusted R 2, 8-7 ALSCAL, 10-49 ANCOVA, 9-1 assumptions, 9-5 example, 9-7 MANOVA
More informationPrincipal component analysis (PCA) for clustering gene expression data
Principal component analysis (PCA) for clustering gene expression data Ka Yee Yeung Walter L. Ruzzo Bioinformatics, v17 #9 (2001) pp 763-774 1 Outline of talk Background and motivation Design of our empirical
More information1 Interpretation. Contents. Biplots, revisited. Biplots, revisited 2. Biplots, revisited 1
Biplots, revisited 1 Biplots, revisited 2 1 Interpretation Biplots, revisited Biplots show the following quantities of a data matrix in one display: Slide 1 Ulrich Kohler kohler@wz-berlin.de Slide 3 the
More informationTHE PRINCIPLES AND PRACTICE OF STATISTICS IN BIOLOGICAL RESEARCH. Robert R. SOKAL and F. James ROHLF. State University of New York at Stony Brook
BIOMETRY THE PRINCIPLES AND PRACTICE OF STATISTICS IN BIOLOGICAL RESEARCH THIRD E D I T I O N Robert R. SOKAL and F. James ROHLF State University of New York at Stony Brook W. H. FREEMAN AND COMPANY New
More informationTIME SERIES ANALYSIS. Forecasting and Control. Wiley. Fifth Edition GWILYM M. JENKINS GEORGE E. P. BOX GREGORY C. REINSEL GRETA M.
TIME SERIES ANALYSIS Forecasting and Control Fifth Edition GEORGE E. P. BOX GWILYM M. JENKINS GREGORY C. REINSEL GRETA M. LJUNG Wiley CONTENTS PREFACE TO THE FIFTH EDITION PREFACE TO THE FOURTH EDITION
More informationDecember 20, MAA704, Multivariate analysis. Christopher Engström. Multivariate. analysis. Principal component analysis
.. December 20, 2013 Todays lecture. (PCA) (PLS-R) (LDA) . (PCA) is a method often used to reduce the dimension of a large dataset to one of a more manageble size. The new dataset can then be used to make
More informationSTATISTICS; An Introductory Analysis. 2nd hidition TARO YAMANE NEW YORK UNIVERSITY A HARPER INTERNATIONAL EDITION
2nd hidition TARO YAMANE NEW YORK UNIVERSITY STATISTICS; An Introductory Analysis A HARPER INTERNATIONAL EDITION jointly published by HARPER & ROW, NEW YORK, EVANSTON & LONDON AND JOHN WEATHERHILL, INC.,
More informationPrinciple Components Analysis (PCA) Relationship Between a Linear Combination of Variables and Axes Rotation for PCA
Principle Components Analysis (PCA) Relationship Between a Linear Combination of Variables and Axes Rotation for PCA Principle Components Analysis: Uses one group of variables (we will call this X) In
More informationAn Introduction to Applied Multivariate Analysis with R
~ Snrinuer Brian Everitt Torsten Hathorn An Introduction to Applied Multivariate Analysis with R > Preface........................................................ vii 1 Multivariate Data and Multivariate
More informationstatistical methods for tailoring seasonal climate forecasts Andrew W. Robertson, IRI
statistical methods for tailoring seasonal climate forecasts Andrew W. Robertson, IRI tailored seasonal forecasts why do we make probabilistic forecasts? to reduce our uncertainty about the (unknown) future
More informationRegression Analysis By Example
Regression Analysis By Example Third Edition SAMPRIT CHATTERJEE New York University ALI S. HADI Cornell University BERTRAM PRICE Price Associates, Inc. A Wiley-Interscience Publication JOHN WILEY & SONS,
More informationMultivariate Statistics Fundamentals Part 1: Rotation-based Techniques
Multivariate Statistics Fundamentals Part 1: Rotation-based Techniques A reminded from a univariate statistics courses Population Class of things (What you want to learn about) Sample group representing
More informationComputation. For QDA we need to calculate: Lets first consider the case that
Computation For QDA we need to calculate: δ (x) = 1 2 log( Σ ) 1 2 (x µ ) Σ 1 (x µ ) + log(π ) Lets first consider the case that Σ = I,. This is the case where each distribution is spherical, around the
More informationLearning Multiple Tasks with a Sparse Matrix-Normal Penalty
Learning Multiple Tasks with a Sparse Matrix-Normal Penalty Yi Zhang and Jeff Schneider NIPS 2010 Presented by Esther Salazar Duke University March 25, 2011 E. Salazar (Reading group) March 25, 2011 1
More informationBasics of Multivariate Modelling and Data Analysis
Basics of Multivariate Modelling and Data Analysis Kurt-Erik Häggblom 6. Principal component analysis (PCA) 6.1 Overview 6.2 Essentials of PCA 6.3 Numerical calculation of PCs 6.4 Effects of data preprocessing
More informationMultiDimensional Signal Processing Master Degree in Ingegneria delle Telecomunicazioni A.A
MultiDimensional Signal Processing Master Degree in Ingegneria delle Telecomunicazioni A.A. 2017-2018 Pietro Guccione, PhD DEI - DIPARTIMENTO DI INGEGNERIA ELETTRICA E DELL INFORMAZIONE POLITECNICO DI
More informationDESIGN AND ANALYSIS OF EXPERIMENTS Third Edition
DESIGN AND ANALYSIS OF EXPERIMENTS Third Edition Douglas C. Montgomery ARIZONA STATE UNIVERSITY JOHN WILEY & SONS New York Chichester Brisbane Toronto Singapore Contents Chapter 1. Introduction 1-1 What
More informationStatistics for Social and Behavioral Sciences
Statistics for Social and Behavioral Sciences Advisors: S.E. Fienberg W.J. van der Linden For other titles published in this series, go to http://www.springer.com/series/3463 Haruo Yanai Kei Takeuchi
More informationCentral limit theorem - go to web applet
Central limit theorem - go to web applet Correlation maps vs. regression maps PNA is a time series of fluctuations in 500 mb heights PNA = 0.25 * [ Z(20N,160W) - Z(45N,165W) + Z(55N,115W) - Z(30N,85W)
More informationPattern Recognition and Machine Learning
Christopher M. Bishop Pattern Recognition and Machine Learning ÖSpri inger Contents Preface Mathematical notation Contents vii xi xiii 1 Introduction 1 1.1 Example: Polynomial Curve Fitting 4 1.2 Probability
More informationWhat is Principal Component Analysis?
What is Principal Component Analysis? Principal component analysis (PCA) Reduce the dimensionality of a data set by finding a new set of variables, smaller than the original set of variables Retains most
More informationCanonical Correlation & Principle Components Analysis
Canonical Correlation & Principle Components Analysis Aaron French Canonical Correlation Canonical Correlation is used to analyze correlation between two sets of variables when there is one set of IVs
More informationNew Introduction to Multiple Time Series Analysis
Helmut Lütkepohl New Introduction to Multiple Time Series Analysis With 49 Figures and 36 Tables Springer Contents 1 Introduction 1 1.1 Objectives of Analyzing Multiple Time Series 1 1.2 Some Basics 2
More informationMachine Learning 11. week
Machine Learning 11. week Feature Extraction-Selection Dimension reduction PCA LDA 1 Feature Extraction Any problem can be solved by machine learning methods in case of that the system must be appropriately
More informationResponse Surface Methodology
Response Surface Methodology Process and Product Optimization Using Designed Experiments Second Edition RAYMOND H. MYERS Virginia Polytechnic Institute and State University DOUGLAS C. MONTGOMERY Arizona
More informationElements of Multivariate Time Series Analysis
Gregory C. Reinsel Elements of Multivariate Time Series Analysis Second Edition With 14 Figures Springer Contents Preface to the Second Edition Preface to the First Edition vii ix 1. Vector Time Series
More informationA direct formulation for sparse PCA using semidefinite programming
A direct formulation for sparse PCA using semidefinite programming A. d Aspremont, L. El Ghaoui, M. Jordan, G. Lanckriet ORFE, Princeton University & EECS, U.C. Berkeley Available online at www.princeton.edu/~aspremon
More informationPrincipal Component Analysis
Principal Component Analysis Yingyu Liang yliang@cs.wisc.edu Computer Sciences Department University of Wisconsin, Madison [based on slides from Nina Balcan] slide 1 Goals for the lecture you should understand
More informationSparse statistical modelling
Sparse statistical modelling Tom Bartlett Sparse statistical modelling Tom Bartlett 1 / 28 Introduction A sparse statistical model is one having only a small number of nonzero parameters or weights. [1]
More informationProbabilistic Latent Semantic Analysis
Probabilistic Latent Semantic Analysis Seungjin Choi Department of Computer Science and Engineering Pohang University of Science and Technology 77 Cheongam-ro, Nam-gu, Pohang 37673, Korea seungjin@postech.ac.kr
More informationLecture 4: Principal Component Analysis and Linear Dimension Reduction
Lecture 4: Principal Component Analysis and Linear Dimension Reduction Advanced Applied Multivariate Analysis STAT 2221, Fall 2013 Sungkyu Jung Department of Statistics University of Pittsburgh E-mail:
More informationCourse in Data Science
Course in Data Science About the Course: In this course you will get an introduction to the main tools and ideas which are required for Data Scientist/Business Analyst/Data Analyst. The course gives an
More informationMachine learning for pervasive systems Classification in high-dimensional spaces
Machine learning for pervasive systems Classification in high-dimensional spaces Department of Communications and Networking Aalto University, School of Electrical Engineering stephan.sigg@aalto.fi Version
More informationApplied Regression Modeling
Applied Regression Modeling A Business Approach Iain Pardoe University of Oregon Charles H. Lundquist College of Business Eugene, Oregon WILEY- INTERSCIENCE A JOHN WILEY & SONS, INC., PUBLICATION CONTENTS
More informationClusters. Unsupervised Learning. Luc Anselin. Copyright 2017 by Luc Anselin, All Rights Reserved
Clusters Unsupervised Learning Luc Anselin http://spatial.uchicago.edu 1 curse of dimensionality principal components multidimensional scaling classical clustering methods 2 Curse of Dimensionality 3 Curse
More informationMathematics for Economics and Finance
Mathematics for Economics and Finance Michael Harrison and Patrick Waldron B 375482 Routledge Taylor & Francis Croup LONDON AND NEW YORK Contents List of figures ix List of tables xi Foreword xiii Preface
More informationLeast Squares Optimization
Least Squares Optimization The following is a brief review of least squares optimization and constrained optimization techniques. I assume the reader is familiar with basic linear algebra, including the
More informationInverse Theory. COST WaVaCS Winterschool Venice, February Stefan Buehler Luleå University of Technology Kiruna
Inverse Theory COST WaVaCS Winterschool Venice, February 2011 Stefan Buehler Luleå University of Technology Kiruna Overview Inversion 1 The Inverse Problem 2 Simple Minded Approach (Matrix Inversion) 3
More informationA Guide to Modern Econometric:
A Guide to Modern Econometric: 4th edition Marno Verbeek Rotterdam School of Management, Erasmus University, Rotterdam B 379887 )WILEY A John Wiley & Sons, Ltd., Publication Contents Preface xiii 1 Introduction
More information* Tuesday 17 January :30-16:30 (2 hours) Recored on ESSE3 General introduction to the course.
Name of the course Statistical methods and data analysis Audience The course is intended for students of the first or second year of the Graduate School in Materials Engineering. The aim of the course
More informationPrincipal Component Analysis CS498
Principal Component Analysis CS498 Today s lecture Adaptive Feature Extraction Principal Component Analysis How, why, when, which A dual goal Find a good representation The features part Reduce redundancy
More informationDESIGNING EXPERIMENTS AND ANALYZING DATA A Model Comparison Perspective
DESIGNING EXPERIMENTS AND ANALYZING DATA A Model Comparison Perspective Second Edition Scott E. Maxwell Uniuersity of Notre Dame Harold D. Delaney Uniuersity of New Mexico J,t{,.?; LAWRENCE ERLBAUM ASSOCIATES,
More informationStructure in Data. A major objective in data analysis is to identify interesting features or structure in the data.
Structure in Data A major objective in data analysis is to identify interesting features or structure in the data. The graphical methods are very useful in discovering structure. There are basically two
More informationIntroduction to Econometrics
Introduction to Econometrics T H I R D E D I T I O N Global Edition James H. Stock Harvard University Mark W. Watson Princeton University Boston Columbus Indianapolis New York San Francisco Upper Saddle
More informationHANDBOOK OF APPLICABLE MATHEMATICS
HANDBOOK OF APPLICABLE MATHEMATICS Chief Editor: Walter Ledermann Volume VI: Statistics PART A Edited by Emlyn Lloyd University of Lancaster A Wiley-Interscience Publication JOHN WILEY & SONS Chichester
More informationMachine Learning (BSMC-GA 4439) Wenke Liu
Machine Learning (BSMC-GA 4439) Wenke Liu 02-01-2018 Biomedical data are usually high-dimensional Number of samples (n) is relatively small whereas number of features (p) can be large Sometimes p>>n Problems
More informationSTATE COUNCIL OF EDUCATIONAL RESEARCH AND TRAINING TNCF DRAFT SYLLABUS
STATE COUNCIL OF EDUCATIONAL RESEARCH AND TRAINING TNCF 2017 - DRAFT SYLLABUS Subject :Business Maths Class : XI Unit 1 : TOPIC Matrices and Determinants CONTENT Determinants - Minors; Cofactors; Evaluation
More informationStatistical foundations
Statistical foundations Michael K. Tippett International Research Institute for Climate and Societ The Earth Institute, Columbia Universit ERFS Climate Predictabilit Tool Training Workshop Ma 4-9, 29 Ideas
More informationChapter 11 Canonical analysis
Chapter 11 Canonical analysis 11.0 Principles of canonical analysis Canonical analysis is the simultaneous analysis of two, or possibly several data tables. Canonical analyses allow ecologists to perform
More informationDATA MINING LECTURE 8. Dimensionality Reduction PCA -- SVD
DATA MINING LECTURE 8 Dimensionality Reduction PCA -- SVD The curse of dimensionality Real data usually have thousands, or millions of dimensions E.g., web documents, where the dimensionality is the vocabulary
More informationSparse PCA with applications in finance
Sparse PCA with applications in finance A. d Aspremont, L. El Ghaoui, M. Jordan, G. Lanckriet ORFE, Princeton University & EECS, U.C. Berkeley Available online at www.princeton.edu/~aspremon 1 Introduction
More information4. Matrix Methods for Analysis of Structure in Data Sets:
ATM 552 Notes: Matrix Methods: EOF, SVD, ETC. D.L.Hartmann Page 68 4. Matrix Methods for Analysis of Structure in Data Sets: Empirical Orthogonal Functions, Principal Component Analysis, Singular Value
More informationHigh-Dimensional Time Series Analysis
High-Dimensional Time Series Analysis Ruey S. Tsay Booth School of Business University of Chicago December 2015 Outline Analysis of high-dimensional time-series data (or dependent big data) Problem and
More informationINTRODUCTION TO DESIGN AND ANALYSIS OF EXPERIMENTS
GEORGE W. COBB Mount Holyoke College INTRODUCTION TO DESIGN AND ANALYSIS OF EXPERIMENTS Springer CONTENTS To the Instructor Sample Exam Questions To the Student Acknowledgments xv xxi xxvii xxix 1. INTRODUCTION
More informationPRINCIPAL COMPONENT ANALYSIS
PRINCIPAL COMPONENT ANALYSIS 1 INTRODUCTION One of the main problems inherent in statistics with more than two variables is the issue of visualising or interpreting data. Fortunately, quite often the problem
More informationData Mining Techniques
Data Mining Techniques CS 6220 - Section 3 - Fall 2016 Lecture 12 Jan-Willem van de Meent (credit: Yijun Zhao, Percy Liang) DIMENSIONALITY REDUCTION Borrowing from: Percy Liang (Stanford) Linear Dimensionality
More informationRegularized Estimation of High Dimensional Covariance Matrices. Peter Bickel. January, 2008
Regularized Estimation of High Dimensional Covariance Matrices Peter Bickel Cambridge January, 2008 With Thanks to E. Levina (Joint collaboration, slides) I. M. Johnstone (Slides) Choongsoon Bae (Slides)
More informationPrincipal Component Analysis (PCA)
Principal Component Analysis (PCA) Additional reading can be found from non-assessed exercises (week 8) in this course unit teaching page. Textbooks: Sect. 6.3 in [1] and Ch. 12 in [2] Outline Introduction
More informationAlbert W. Marshall. Ingram Olkin Barry. C. Arnold. Inequalities: Theory. of Majorization and Its Applications. Second Edition.
Albert W Marshall Ingram Olkin Barry C Arnold Inequalities: Theory of Majorization and Its Applications Second Edition f) Springer Contents I Theory of Majorization 1 Introduction 3 A Motivation and Basic
More informationLinear Algebra Methods for Data Mining
Linear Algebra Methods for Data Mining Saara Hyvönen, Saara.Hyvonen@cs.helsinki.fi Spring 2007 The Singular Value Decomposition (SVD) continued Linear Algebra Methods for Data Mining, Spring 2007, University
More informationRobust Principal Component Analysis
ELE 538B: Mathematics of High-Dimensional Data Robust Principal Component Analysis Yuxin Chen Princeton University, Fall 2018 Disentangling sparse and low-rank matrices Suppose we are given a matrix M
More informationFAST CROSS-VALIDATION IN ROBUST PCA
COMPSTAT 2004 Symposium c Physica-Verlag/Springer 2004 FAST CROSS-VALIDATION IN ROBUST PCA Sanne Engelen, Mia Hubert Key words: Cross-Validation, Robustness, fast algorithm COMPSTAT 2004 section: Partial
More informationResearchers often record several characters in their research experiments where each character has a special significance to the experimenter.
Dimension reduction in multivariate analysis using maximum entropy criterion B. K. Hooda Department of Mathematics and Statistics CCS Haryana Agricultural University Hisar 125 004 India D. S. Hooda Jaypee
More informationObserved Brain Dynamics
Observed Brain Dynamics Partha P. Mitra Hemant Bokil OXTORD UNIVERSITY PRESS 2008 \ PART I Conceptual Background 1 1 Why Study Brain Dynamics? 3 1.1 Why Dynamics? An Active Perspective 3 Vi Qimnü^iQ^Dv.aamics'v
More informationRobustness of Principal Components
PCA for Clustering An objective of principal components analysis is to identify linear combinations of the original variables that are useful in accounting for the variation in those original variables.
More informationUnconstrained Ordination
Unconstrained Ordination Sites Species A Species B Species C Species D Species E 1 0 (1) 5 (1) 1 (1) 10 (4) 10 (4) 2 2 (3) 8 (3) 4 (3) 12 (6) 20 (6) 3 8 (6) 20 (6) 10 (6) 1 (2) 3 (2) 4 4 (5) 11 (5) 8 (5)
More informationPRINCIPAL COMPONENTS ANALYSIS
121 CHAPTER 11 PRINCIPAL COMPONENTS ANALYSIS We now have the tools necessary to discuss one of the most important concepts in mathematical statistics: Principal Components Analysis (PCA). PCA involves
More informationContents. Acknowledgments
Table of Preface Acknowledgments Notation page xii xx xxi 1 Signals and systems 1 1.1 Continuous and discrete signals 1 1.2 Unit step and nascent delta functions 4 1.3 Relationship between complex exponentials
More informationPrincipal component analysis
Principal component analysis Motivation i for PCA came from major-axis regression. Strong assumption: single homogeneous sample. Free of assumptions when used for exploration. Classical tests of significance
More information2/26/2017. This is similar to canonical correlation in some ways. PSY 512: Advanced Statistics for Psychological and Behavioral Research 2
PSY 512: Advanced Statistics for Psychological and Behavioral Research 2 What is factor analysis? What are factors? Representing factors Graphs and equations Extracting factors Methods and criteria Interpreting
More informationMultivariate Data Analysis a survey of data reduction and data association techniques: Principal Components Analysis
Multivariate Data Analysis a survey of data reduction and data association techniques: Principal Components Analysis For example Data reduction approaches Cluster analysis Principal components analysis
More informationPCA and admixture models
PCA and admixture models CM226: Machine Learning for Bioinformatics. Fall 2016 Sriram Sankararaman Acknowledgments: Fei Sha, Ameet Talwalkar, Alkes Price PCA and admixture models 1 / 57 Announcements HW1
More informationDimension Reduction (PCA, ICA, CCA, FLD,
Dimension Reduction (PCA, ICA, CCA, FLD, Topic Models) Yi Zhang 10-701, Machine Learning, Spring 2011 April 6 th, 2011 Parts of the PCA slides are from previous 10-701 lectures 1 Outline Dimension reduction
More informationAlgebra of Principal Component Analysis
Algebra of Principal Component Analysis 3 Data: Y = 5 Centre each column on its mean: Y c = 7 6 9 y y = 3..6....6.8 3. 3.8.6 Covariance matrix ( variables): S = -----------Y n c ' Y 8..6 c =.6 5.8 Equation
More informationPrincipal Component Analysis-I Geog 210C Introduction to Spatial Data Analysis. Chris Funk. Lecture 17
Principal Component Analysis-I Geog 210C Introduction to Spatial Data Analysis Chris Funk Lecture 17 Outline Filters and Rotations Generating co-varying random fields Translating co-varying fields into
More informationMohsen Pourahmadi. 1. A sampling theorem for multivariate stationary processes. J. of Multivariate Analysis, Vol. 13, No. 1 (1983),
Mohsen Pourahmadi PUBLICATIONS Books and Editorial Activities: 1. Foundations of Time Series Analysis and Prediction Theory, John Wiley, 2001. 2. Computing Science and Statistics, 31, 2000, the Proceedings
More informationPCA, Kernel PCA, ICA
PCA, Kernel PCA, ICA Learning Representations. Dimensionality Reduction. Maria-Florina Balcan 04/08/2015 Big & High-Dimensional Data High-Dimensions = Lot of Features Document classification Features per
More information6. Let C and D be matrices conformable to multiplication. Then (CD) =
Quiz 1. Name: 10 points per correct answer. (20 points for attendance). 1. Let A = 3 and B = [3 yy]. When is A equal to B? xx A. When x = 3 B. When y = 3 C. When x = y D. Never 2. See 1. What is the dimension
More informationLinear Algebra Methods for Data Mining
Linear Algebra Methods for Data Mining Saara Hyvönen, Saara.Hyvonen@cs.helsinki.fi Spring 2007 Linear Discriminant Analysis Linear Algebra Methods for Data Mining, Spring 2007, University of Helsinki Principal
More information1 Data Arrays and Decompositions
1 Data Arrays and Decompositions 1.1 Variance Matrices and Eigenstructure Consider a p p positive definite and symmetric matrix V - a model parameter or a sample variance matrix. The eigenstructure is
More informationContents. Set Theory. Functions and its Applications CHAPTER 1 CHAPTER 2. Preface... (v)
(vii) Preface... (v) CHAPTER 1 Set Theory Definition of Set... 1 Roster, Tabular or Enumeration Form... 1 Set builder Form... 2 Union of Set... 5 Intersection of Sets... 9 Distributive Laws of Unions and
More informationMultivariate Statistical Analysis
Multivariate Statistical Analysis Fall 2011 C. L. Williams, Ph.D. Lecture 4 for Applied Multivariate Analysis Outline 1 Eigen values and eigen vectors Characteristic equation Some properties of eigendecompositions
More informationhttps://goo.gl/kfxweg KYOTO UNIVERSITY Statistical Machine Learning Theory Sparsity Hisashi Kashima kashima@i.kyoto-u.ac.jp DEPARTMENT OF INTELLIGENCE SCIENCE AND TECHNOLOGY 1 KYOTO UNIVERSITY Topics:
More informationFactor Analysis (10/2/13)
STA561: Probabilistic machine learning Factor Analysis (10/2/13) Lecturer: Barbara Engelhardt Scribes: Li Zhu, Fan Li, Ni Guan Factor Analysis Factor analysis is related to the mixture models we have studied.
More informationPrecipitation variability in the Peninsular Spain and its relationship with large scale oceanic and atmospheric variability
Precipitation variability in the Peninsular Spain and its relationship with large scale oceanic and atmospheric variability María Beltrán Peralta Master s Degree in Geophysics and Meteorology, University
More information