ANTABIF: Antarctic Biodiversity Information Facility
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1 ANTABIF: Antarctic Biodiversity Information Facility DryValleys, 2012
2 Our vision: Antarctic biodiversity data are open, linked, useful, interoperable and safe.
3 What s ANTABIF? David B, Danis B, Griffiths HJ
4 What s ANTABIF? Born as Census of Antarctic Marine Life as the data, visualization and analysis component David B, Danis B, Griffiths HJ
5 What s ANTABIF? Born as Census of Antarctic Marine Life as the data, visualization and analysis component Free and open access to biodiversity data: taxonomy and biogeography David B, Danis B, Griffiths HJ
6 What s ANTABIF? Born as Census of Antarctic Marine Life as the data, visualization and analysis component Free and open access to biodiversity data: taxonomy and biogeography SCAR-MarBIN => ANTABIF projects David B, Danis B, Griffiths HJ
7 What s ANTABIF? Born as Census of Antarctic Marine Life as the data, visualization and analysis component Free and open access to biodiversity data: taxonomy and biogeography SCAR-MarBIN => ANTABIF projects Science, conservation and management David B, Danis B, Griffiths HJ
8 What s ANTABIF? Born as Census of Antarctic Marine Life as the data, visualization and analysis component Free and open access to biodiversity data: taxonomy and biogeography SCAR-MarBIN => ANTABIF projects Science, conservation and management Networked community developments David B, Danis B, Griffiths HJ
9 What s ANTABIF? Born as Census of Antarctic Marine Life as the data, visualization and analysis component Free and open access to biodiversity data: taxonomy and biogeography SCAR-MarBIN => ANTABIF projects Science, conservation and management Networked community developments Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJ
10 What s ANTABIF? Born as Census of Antarctic Marine Life as the data, visualization and analysis component Free and open access to biodiversity data: taxonomy and biogeography SCAR-MarBIN => ANTABIF projects Science, conservation and management Networked community developments Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJ
11 Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life
12 Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life
13 Progress: Biogeography Single access to 900 datasets 2.5 million records Data back to 1900 (Pygoscelis adeliae) Spatial data on over 5000 taxa Downloadable Interoperable Free and open
14 Progress: Biogeography Single access to 900 datasets 2.5 million records Data back to 1900 (Pygoscelis adeliae) Spatial data on over 5000 taxa Downloadable Interoperable Free and open
15 progress: ANTABIF Architecture
16 progress: ANTABIF Architecture
17 progress: ANTABIF Architecture data.biodiversity.aq
18 progress: ANTABIF Architecture data.biodiversity.aq ipt.biodiversity.aq
19 progress: ANTABIF Architecture data.biodiversity.aq ipt.biodiversity.aq afg.biodiversity.aq
20 progress: ANTABIF Architecture data.biodiversity.aq ipt.biodiversity.aq afg.biodiversity.aq atlas.biodiversity.aq
21 progress: ANTABIF Architecture data.biodiversity.aq ipt.biodiversity.aq afg.biodiversity.aq atlas.biodiversity.aq mars.biodiversity.aq
22 progress: ANTABIF Architecture MODULAR ARCHITECTURE data.biodiversity.aq ipt.biodiversity.aq afg.biodiversity.aq atlas.biodiversity.aq mars.biodiversity.aq ANTABIF
23 progress: ANTABIF Architecture data.biodiversity.aq ipt.biodiversity.aq MODULAR ARCHITECTURE ed) Data discovery afg.biodiversity.aq atlas.biodiversity.aq mars.biodiversity.aq ANTABIF
24 progress: ANTABIF Architecture data.biodiversity.aq MODULAR ARCHITECTURE Data discovery ipt.biodiversity.aq afg.biodiversity.aq ed) Data visualization A atlas.biodiversity.aq mars.biodiversity.aq ANTABIF
25 progress: ANTABIF Architecture data.biodiversity.aq MODULAR ARCHITECTURE Data discovery ipt.biodiversity.aq afg.biodiversity.aq Data products ed) Data visualization A atlas.biodiversity.aq mars.biodiversity.aq ANTABIF
26 data.biodiversity.aq data discovery interface visualize occurrence data on map view taxonomic data download data view metrics send feedback access technical documentation
27 Data flow (user s point of view) Your data DwC-A IPT ANTABIF standardize upload publish publish Data Paper
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36 ipt.biodiversity.aq Integrated Publishing Toolkit standardize and clean your data manage primary biodiversity data manage associated metadata choose collaborators generate and submit a Data Paper push data and metadata to Information Systems
37 ipt.biodiversity.aq
38 ipt. biodiversity.aq
39 ipt. biodiversity.aq
40 ipt. biodiversity.aq
41 ipt. biodiversity.aq
42 Reward data publishing Metadata document Data Paper
43 Proof of concept
44 Proof of concept
45 Proof of concept
46 Proof of concept ZooKeys 185: (2012) doi: /zookeys Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition 73 DAtA PAPEr A peer-reviewed open-access journal Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Bruno Danis 1, Michel Jangoux 2, Jennifer Wilmes 2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan Received 13 March 2012 Accepted 18 April 2012 Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: doi: /zookeys Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41 S to -71 S (latitude) and from 0 to -65 W (longitude). A complete list of stations is available from the PANGAEA data system ( including a cruise report ( The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Eremicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS systems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
47 Proof of concept ZooKeys 185: (2012) doi: /zookeys Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition 73 DAtA PAPEr A peer-reviewed open-access journal Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: Bruno Danis 1, Michel Jangoux 2, Jennifer Wilmes 2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan Received 13 March 2012 Accepted 18 April 2012 Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: doi: /zookeys Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41 S to -71 S (latitude) and from 0 to -65 W (longitude). A complete list of stations is available from the PANGAEA data system ( including a cruise report ( The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Eremicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS systems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
48 afg. biodiversity.aq Identification aid High quality (useful) pictures Expert Descriptions Built on-the-fly from various sources Generates a pdf for taxa/area of interest
49 afg. biodiversity.aq
50 afg. biodiversity.aq
51 afg. biodiversity.aq
52 atlas.biodiversity.aq
53 atlas.biodiversity.aq Biogeographic Atlas of the Southern Ocean
54 atlas.biodiversity.aq Biogeographic Atlas of the Southern Ocean Redo of Hedgepeth 1969 Folio
55 atlas.biodiversity.aq Biogeographic Atlas of the Southern Ocean Redo of Hedgepeth 1969 Folio Predictive approach
56 atlas.biodiversity.aq Biogeographic Atlas of the Southern Ocean Redo of Hedgepeth 1969 Folio Predictive approach Static and dynamic versions
57 atlas.biodiversity.aq Biogeographic Atlas of the Southern Ocean Redo of Hedgepeth 1969 Folio Predictive approach Static and dynamic versions Modelization loops are ready
58 94 Interpolated data layers Slope Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature... + ANTABIF Occurrence records
59 94 Interpolated data layers Slope Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature... + ANTABIF Occurrence records
60 94 Interpolated data layers Slope Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature... + ANTABIF Occurrence records
61 R-functions GUI for BRT and GDM
62 R-functions GUI for BRT and GDM
63 mars.biodiversity.aq
64 mars.biodiversity.aq Microbial Antarctic Resource System
65 mars.biodiversity.aq Microbial Antarctic Resource System The organisms are small but their environmental impacts are critical to many Antarctic ecosystems
66 mars.biodiversity.aq Microbial Antarctic Resource System The organisms are small but their environmental impacts are critical to many Antarctic ecosystems They are the dominant and most diverse form of life in the oceans and in the various microbial habitats on the continent
67 mars.biodiversity.aq Microbial Antarctic Resource System The organisms are small but their environmental impacts are critical to many Antarctic ecosystems They are the dominant and most diverse form of life in the oceans and in the various microbial habitats on the continent Access to their diversity is becoming cost-effective and increasing exponentially
68 mars.biodiversity.aq
69 mars.biodiversity.aq Integrate Antarctic microbial DNA sequence data in ANTABIF
70 mars.biodiversity.aq Integrate Antarctic microbial DNA sequence data in ANTABIF Phased approach:
71 mars.biodiversity.aq Integrate Antarctic microbial DNA sequence data in ANTABIF Phased approach: Step 0: data description and discovery
72 mars.biodiversity.aq Integrate Antarctic microbial DNA sequence data in ANTABIF Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata
73 mars.biodiversity.aq Integrate Antarctic microbial DNA sequence data in ANTABIF Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data
74 mars.biodiversity.aq Integrate Antarctic microbial DNA sequence data in ANTABIF Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processing
75 mars.biodiversity.aq Integrate Antarctic microbial DNA sequence data in ANTABIF Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processing Step 4: customized sequence data processing
76 mars.biodiversity.aq
77 mars.biodiversity.aq Potential applications:
78 mars.biodiversity.aq Potential applications: Is there a biogeography of Antarctic microbes?
79 mars.biodiversity.aq Potential applications: Is there a biogeography of Antarctic microbes? Document Antarctic bioprospecting activities
80 mars.biodiversity.aq Potential applications: Is there a biogeography of Antarctic microbes? Document Antarctic bioprospecting activities Assess bioindicating value of microbial diversity as early warning system of ecosystems shifts
81 In the pipeline
82 in the pipeline Interactive Identification keys Spatially explicit gazetteer Genomics/Proteomics (mars paving the way) Expeditions DBs more...
83 Thanks and image NY Times
Antarctic Marine Biodiversity Data Now Online
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the map Redrawing Donald Hobern takes a look at the challenges of managing biodiversity data [ Feature ]
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