2. Orbitals and Hybridization. Alkanes. Conformational Stereoisomerism. Structural Isomerism.

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1 Grossman, E Orbitals and ybridization. Alkanes. onformational Stereoisomerism. Structural Isomerism. 2.1 Atomic and Molecular Orbitals. We can use molecular orbital (MO) theory to describe the structure of molecules in more detail. MO theory also provides a means of predicting the shapes of molecules. In MO theory, our first hypothesis is that bonding occurs by the overlap of singly occupied atomic orbitals. So if we look at 2, we see that two singly occupied s orbitals, each with a spherical shape, come together in space to form a new MO with an oblong shape. Electrons in this new MO have less energy than electrons in either of the two atomic orbitals with which we started. As a result, energy is released, and the molecule that is formed is more stable than the individual atoms form which it was formed. You might think that the atoms could keep coming together until they were merged, but at a certain distance the repulsion between the positively charged nuclei becomes important. The balance point is called the bond distance. At this point the energy of the system is at a minimum. We can draw diagrams like the ones below. The diagram on the right shows how two atomic orbitals come together to form a bonding orbital of lower energy than either constituent orbital. It also shows that an anti-bonding orbital of correspondingly higher energy is formed. If two e atoms come together, we can draw exactly the same picture, except that we would have to put the two extra electrons in the anti-bonding orbital. Then we would have equal amounts of loss and gain in energy. The net result would be no gain in energy for the system, and the two e atoms would be happier to fly apart than they would be to stick together. 0 Energy (1s) (1s) bond distance internuclear distance 2.1

2 Grossman, E Bond Strengths. Bonds can be broken homolytically (one electron to each atom) or heterolytically (two electrons to one atom, none to the other). Bond strengths A B are defined as the ability to separate A B into A and B. Bonds differ in strength. Some are strong, some weak. ow to tell? 1) Bonds between two electronegative elements are weak. E.g., O O (35). 2) Bonds between two elements of different size are weaker than bonds between elements of the same size. E.g., cf. F (116), l (79), and I (52). 3) Bonds between two small elements are usually strong. E.g., (98), O (79), (81), N (66), O (109). 4) Double bonds are stronger than single bonds. But the = bond (145) is not twice as strong as the bond (81); on the other hand, the =O bond (173) is more than twice as strong as the O (79) bond, and the N bond (204) is just about thrice as strong as the N (66) bond. Why does size matter? It has to do with overlap between orbitals. Overlap between two small orbitals is much better than overlap between a big orbital and a small orbital. A strong bond is one in which the bonding MO is much lower in energy than the component AOs. This terminology is a little counterintuitive: a high-energy bond is weak, and a low-energy bond is strong. (More on this in a moment.) eterolytic cleavage of bonds is typical of acids and bases, as is the reverse reaction, the formation of bonds from an acid and a base. ere, a filled orbital comes together with an empty orbital to make two new orbitals, one of which is lower in energy than either partner. 2.3 sp 3 ybridization. Remember that has four valence electrons in the configuration 2s 2 2p x 1 2p y 1, where p x and p y are two of the three p atomic orbitals (AOs) in shell 2. Since has two singly occupied AOs, we might expect that it would form two bonds. In fact, almost always likes to form four bonds, as in methane, 4. What can we do? The first thing we can do is promote one electron from 2s to 2.2

3 Grossman, E 230 2p z. Then we have the configuration 2s 1 2p x 1 2p y 1 2p z 1, with four singly occupied AOs. This helps a lot. Now we can say that each AO is used to form one bond to in 4. p s atomic ; can make only 2 bonds excited atomic ; can make 4 bonds, one different from others There is still a problem, though. The angle between each of the p orbitals is 90, so we might guess that three of the four bonds in methane are 90 apart. In fact every bit of evidence shows that all four bonds are equivalent. Something must be done. What we do is to average the four s and p AOs mathematically. This gives us four equivalent AOs. We call them sp 3 orbitals, because they consists of 1 part s orbital and 3 parts p orbital. Their energy is 3/4 of p sp 3 s excited atomic ; can make 4 bonds, one different from others (sp 3 ); can make 4 equivalent bonds 2.3

4 Grossman, E 230 the distance between s and p. They point at 109 angles from each other, that is, to the four corners of a tetrahedron. can use each hybrid AO to overlap with a (s) orbital to make two new MOs. The concept of hybridization is very different from that of bond-making, even though both involve mixing orbitals to make new orbitals. In hybridization, a single atom takes its AOs and uses mathematics to convert them into the same number of new AOs. No physical change has taken place; the total energy of the AOs is the same, and the amount of space covered by those AOs is the same. In bonding, two different atoms come together, and one AO from each overlap to form new MOs. When two AOs come together in this way, one new MO is lower in energy, and one is higher in energy. If each constituent AO contained one electron, then two electrons go into the bonding MO, and a bond is formed because the two electrons have lower energy than they would if the two atoms were far apart. That is, the new hybrid AOs are used to make bonds just as the individual pure AOs might have done.!" (sp 3 ) (s)! 2.4 ybridization in Alkenes. We can hybridize orbitals in other ways, too. If we combine the s orbital with two p orbitals and leave the third one unaltered, we have sp 2 hybridization. An sp 2 -hybridized atom has three equivalent sp 2 orbitals, each with 1/3 s and 2/3 p character, and one unadulterated p orbital. The sp 2 orbitals are 120 apart. If we combine the s orbital with one p orbital and leave the other two unaltered, we have sp hybridization. An sp-hybridized atom has two equivalent sp orbitals, each with 1/2 s and 1/2 p character, and two unadulterated p orbitals. The sp orbitals are 180 apart. The two p orbitals are perpendicular to each other and to the line containing the sp orbitals. 2.4

5 Grossman, E 230 artoons of sp 3, sp 2, and sp orbitals all look like a fishy, although in fact they have slightly different shapes. Under what circumstances do we find (sp 3 ), (sp 2 ), and (sp) hybridization, and how does "choose" a particular hybridization? Suppose 4 were sp 2 -hybridized. Three atoms would be coplanar, and the fourth, whose s orbital overlapped with the p orbital, would have a 90 angle with respect to the other three. Moreover, half the p orbital's bonding density would be wasted on the side of the atom opposite the unique atom. So we can see that sp 3 hybridization is best for a atom that is bound to four different atoms. 4 with (sp 2 ) owever, when a atom is bound to three different atoms, the situation changes. onsider ethene (ethylene, 2 = 2 ). If the atoms were sp 3 -hybridized, we would need to use two hybrid orbitals to construct the double bond. They would need to be canted with respect to the axis, thus putting only a small amount of electron density between the two nuclei. Not a good situation! 2 = 2 with (sp 3 ) To put maximum density between the two nuclei, the atom must place an orbital in the same plane as the bonds. This arrangement is achieved by sp 2 hybridization. The three (sp 2 ) orbitals on one atom are used to form two σ bonds to atoms and one σ bond to the other. The p orbital is used to form the second bond to the other atom. The (p) orbitals overlap with each other lengthwise, giving a bond that does not look like the σ bonds we have seen already. This bond is a π bond. It has a node, i.e., a plane in which no electron density resides. The (p) orbital has a higher energy than the (sp 2 ) orbital used to make the σ bond, and the (p) (p) overlap is poorer than the (sp 2 ) (sp 2 ) overlap, so the energy of the π bond is 2.5

6 Grossman, E 230 higher than the energy of the σ bond. Whenever you have a double bond between two atoms, there is one σ MO and one π MO. The energy of the (sp 2 ) (sp 2 ) σ bond is lower than the energy of the (sp 3 ) (sp 3 ) bond of ethane, because the (sp 2 ) orbitals are lower in energy than a (sp 3 ) orbital. s*!*! s (sp 2 ) (sp 2 ) (p) (p) Just like there is a σ* orbital associated with a σ orbital in the bond, so there are antibonding orbitals associated with the (sp 2 ) (sp 2 ) σ bond and the (p) (p) π bond. A atom that makes one double bond and two single bonds is sp 2 -hybridized. p orbital p* orbital s orbital s* orbital 2.5 ybridization in Alkynes. The same logic that told us that the atoms in ethylene cannot be sp 3 -hybridized tells us that the atoms in ethyne (acetylene, ) cannot be sp 3 - or sp 2 -hybridized. Instead, each atom 2.6

7 Grossman, E 230 is sp-hybridized. The s orbital is averaged with just one p orbital to make two new hybrid sp orbitals that are pointing 180 from one another. The energy of the sp orbital is halfway between that of an s orbital and that of a p orbital. One of the sp orbitals is used to make a σ bond with the other, and the other is used to make a σ bond with. The two remaining, unhybridized p orbitals are used to overlap with two p orbitals on the other atoms to make two π bonds. Whenever you have a triple bond between two atoms, there are one filled σ MO and two filled π MOs (and the corresponding empty anti-bonding MOs). Again, there are anti-bonding orbitals associated with the (sp) (sp) σ bond and the (p) (p) π bonds. A atom that makes one triple bond and one single bond is sp-hybridized. sp p + p + p p sp sp p + p + p p sp Even though it's hard to tell, the π electrons around the bond form a hollow cylinder of electron density. 2.6 ybridization in eteroatoms. eteroatoms also hybridize. We treat most lone pairs as if they were groups to which the heteroatom was bound; usually they reside in hybrid orbitals. If a heteroatom has only σ bonds to its neighbors, it is sp 3 -hybridized. (Examples: dimethyl ether, ammonia.) If a heteroatom has one π bond to one neighbor, it is sp 2 -hybridized. (Examples: pyridine, acetone, protonated acetone.) If a heteroatom has two π bonds to its neighbors, it is sp-hybridized. (Acetonitrile.) These hybridizations have consequences for both structure (bond angles and lengths) and reactivity (lone pairs with certain energies). To summarize: ybrid orbitals are used to form σ bonds and to contain lone pairs. Unhybridized p orbitals are used to form π bonds or are empty. To determine the hybridization of an atom, count the number of σ bonds and lone pairs not used in resonance; you need that many hybrid orbitals. We said that lone pairs are put in hybrid orbitals. If the lone pair can be used in resonance, however, it must be in a p orbital for maximum overlap to occur. Therefore: ybrid orbitals are 2.7

8 Grossman, E 230 used to form σ bonds and to contain lone pairs not used in resonance. Unhybridized p orbitals are used to form π bonds, hold lone pairs used in resonance, or are empty. Be careful when determining hybridization of heteroatoms in cyclic compounds. Pyridine, pyrrole, furan all have sp 2 -hybridized heteroatoms. In pyrrole and furan one lone pair is involved in resonance; in pyridine the lone pair is not involved in resonance. 2.7 Derivatives of methane. We can replace one of the atoms in methane with another atom or group. These atoms or groups are called heteroatoms. Examples: Methyl bromide, methyl iodide, methanol, methylamine, methanethiol. ere the central atom is not quite as perfectly tetrahedral, but for our purposes, it is close enough. If the atom is replaced with nothing, we have three possibilities. We can remove just the nucleus and leave behind two electrons -- this gives 3, with sp 3 hybridization. It has the same structure as ammonia, just one fewer proton (and neutron) in the nucleus in the center. We can take away the nucleus and both electrons. This gives us + 3. The hybridization here? We don't want to waste valuable low-energy s orbital in a hybrid orbital in which there are no electrons. Instead, the valuable s electron is divided equally among the six electrons (three bonds) remaining. Three bonds means three orbitals, one s and two p. That means the third p orbital remains unhybridized. This situation is called sp 2 hybridization. Two p orbitals occupy a plane, so in sp 2 hybridization, the three hybrid orbitals are coplanar. They point 120 apart, to the corners of a triangle. The unhybridized p orbital is perpendicular to this plane. What if we take away the nucleus and one electron? We have a situation in which 3 (methyl radical) is between sp 2 and sp 3 hybridization. It's a shallow pyramid. These species are high in energy and don't exist for long. The word "methyl" also refers to a 3 group that is attached to the rest of a molecule. In general, the root "meth-" means "a one-carbon group". The abbreviation Me is often used for 3. So MeI is the same as 3 I. 2.8

9 Grossman, E Ethane. If we replace one of the atoms in ethane with another 3 group, we get a compound that might be called methylmethane, but we call it ethane. In ethane, 3 3, each atom has four different groups attached, so each one is sp 3 -hybridized. Each - bond is formed by overlap of a (sp 3 ) orbital with a (s) orbital. The - bond is formed by the overlap of a (sp 3 ) orbital from each atom. All of these bonds are σ bonds. A σ bond has cylindrical symmetry; if you look down the axis of the bond, it looks like a circle. As you'll see in a bit, not all bonds have that property. We can draw overlap diagrams for and bonds like the one we did for, except, since the two constituent atomic orbitals of the bond have slightly different energies, the diagram for this bond will be slightly lopsided. (A parallelapiped instead of a rhombus.) As in 2, anti-bonding σ* orbitals are formed along with the bonding σ orbitals. Anti-bonding orbitals are denoted by an asterisk.!*!*! (sp 3 ) (sp 3 )! (sp 3 ) (s) It's too much trouble to draw an orbital diagram. Instead, we tend to use just lines to indicate bonds. In the case of ethane, though, even that's a lot (seven bonds). So we use a condensed structure, 3 3, in which only the most important bond, the bond, is shown. 2.9 onformational stereoisomers of ethane. Let's take a closer look at ethane. The σ bond in ethane has cylindrical symmetry, so we can rotate the two 3 groups with respect to one another without changing the amount of overlap between the two sp 3 orbitals making up the σ bond. As a result, the rotation is very facile and very fast. This is most obvious if you make a model of ethane. 2.9

10 Grossman, E 230 etc. The three structures above have the same atoms attached to the same atoms, but the shapes of the compounds are different. As a result, they are stereoisomers. These particular stereoisomers can be interconverted simply by rotating about σ bonds, so they are called conformational stereoisomers, or conformers for short. Because the internal dimensions (dihedral angles, distances) of the three conformers above are different, they are conformational diastereomers. onformers usually interconvert so rapidly that they can t be separated from each other. This phenomenon is called free rotation. There are three common ways of drawing different conformers. The sawhorse projection is the one that I used above. We call it sawhorse because that s what it looks like. Another way of drawing conformers is called the Newman projection. In this projection, we look directly down the axis of the σ bond, which is represented as a circle. We can see the proximal atom, but the distal atom is obscured by the circle of the σ bond. The bonds to the proximal atom are fully visible, but the bonds to the distal atom are partly obscured. The three ethane conformers drawn above are redrawn below as Newman projections. We can also use perspective drawings with the wedged/ hashed line formalism to indicate different conformations. These are also shown below. etc. etc. 2.10

11 Grossman, E 230 Problem for home. (1) Draw all eclipsed and staggered conformations of 1-bromo-2- chloroethane. Which of these are stereoisomeric to one another? Which are identical? Because the different conformers of ethane are diastereomeric, we can expect that some of them are higher in energy (less stable) than others. This is in fact the case. The first and third conformers that I drew are called the staggered and eclipsed conformations of ethane. The terms refer to the mutual arrangements of the bonds. The eclipsed conformer is illustrated most dramatically by the Newman projection. The eclipsed conformation is higher in energy than the staggered conformation. The actual difference in energy is 2.9 kcal/mol (12 kj/mol), which is a small but measurable amount. (At room temperature, every 1.35 kcal/mol difference in energy means a 10-fold difference in ratio.) So rotation about the σ bond is not perfectly free, but passes through an energy barrier of 2.9 kcal/mol every time it passes through the eclipsed conformation. We can draw a graph of energy versus the dihedral angle between two bonds. (The dihedral angle of W X Y Z is the angle that we see when we line X and Y up so that one is laying on top of the other, as in a Newman projection. More formally, it is the angle between the line defined by W and X and the plane defined by X, Y, and Z.) A number of points can be made regarding this graph. First of all, note that the eclipsed conformers represent energy maxima. A molecule in the eclipsed conformation is at unstable equilibrium, and it will not remain there for more than one molecular vibration. As a result we say that eclipsed conformers are transition states for the interconversion of the staggered conformers. There are two reasons usually given for why the staggered conformer has lower energy. 1. The bonds consist of electrons, and electrons repel one another, so the eclipsed conformation, where the bonds are all aligned, experiences a greater amount of electronic repulsion than the staggered conformation. 2. In the staggered conformation, the orbitals of each bond that contain the bonding electrons overlap better with the antibonding σ* orbital of the staggered bond. This hyperconjugative interaction helps to delocalize the electrons, lowering their energy. The interaction is better in the staggered conformer, because the big lobe of the σ orbital overlaps with the big lobe of the σ* orbital. In the eclipsed conformer, the big lobe of the σ orbital overlaps with the small lobe of the σ* orbital. 2.11

12 Grossman, E 230!!!"!" good overlap poorer overlap Because there are three eclipsing interactions in each eclipsed conformer, we can divide up the total energy of the eclipsed conformer, 2.9 kcal/mol, into 1.0 kcal/mol for each / stabilizing interaction. The lack of stabilization in the eclipsed conformer of ethane is called torsional strain. We will see soon that there are other kinds of strain that can lead a particular molecule or conformer to have higher than expected energy. Energy 2.9 kcal/mol * * * * * * * * * * * * * * 2.10 Derivatives of ethane. We can make derivatives of ethane by replacing the atoms in ethane. If just one of the atoms in ethane is replaced by a different group, then the 2 5 group is called an ethyl group. So 2 5 O is called ethyl alcohol, 2 5 l is called ethyl chloride, etc. Another way of naming these compounds is to call them derivatives of ethane. So 2 5 Br is ethane, but with one bromine replacing a, so we call it bromoethane. By this logic, we might call 2 5 O 2.12

13 Grossman, E 230 hydroxyethane. owever, the O group is so important that it is given its own suffix, -ol (as in alcohol). So ethane with one replaced by the O group is called ethanol. The word "ethyl" also refers to a 3 group that is attached to the rest of a molecule. In general, the root "eth-" means "a two-carbon group" (with associated atoms). The abbreviation Et is often used for 3 2. So EtO is the same as 3 2 O. Problem for class. What is 3 O called? 2.11 Propane & its derivatives. Skeletal isomerism. igher alkanes can be made by replacing more atoms. Replace one of the atoms of ethane (it doesn't matter which, they're all equivalent) with another 3 group. We now have a threecarbon compound, propane. If we look down one of the bonds of propane, we see that we can have different conformers. There is one kind of staggered conformer, and one kind of eclipsed conformer. The barrier to rotation about the bonds in propane is 3.4 kcal/mol, which is higher than the barrier for ethane (2.9 kcal/mol). The reason is that is slightly more electronegative than (2.5 vs. 2.1 on the Pauling scale), so the σ* orbital is slightly lower in energy than the σ* orbital, so the hyperconjugative interaction between the σ bond and the σ* orbital in staggered propane is slightly more favorable than that between the σ bond and the σ* orbital (1.5 kcal/mol vs. 1.0 kcal/mol) etc. Propane has a property that is not present in ethane or methane. There are two different kinds of atoms in propane, and there are two different kinds of atoms. The terminal 3 groups in propane (which are indistinguishable, or equivalent) are called methyl groups, and the middle 2 group is called a methylene group. The atoms on the 3 groups are called primary (1 ), and the atoms on the methylene group are called secondary (2 ). 2.13

14 Grossman, E 230 If we want to make a derivative of propane by replacing a atom with a heteroatom, we now have two different atoms we can choose from. If we replace a 3 atom with X, we have a different compound from if we replace the middle atom. Replacing a 3 atom gives what are called propyl compounds or (old-fashioned) n-propyl compounds. Replacing a 2 atom gives isopropyl compounds. So, if X = O, we have isopropyl alcohol, or isopropanol (rubbing alcohol). The abbreviations Pr and i-pr (or i Pr, or ipr) are often used for propyl and isopropyl. Isopropanol and propanol have the same chemical formula, but the atom-to-atom connections are different. They are called skeletal isomers (a.k.a. constitutional isomers). Skeletal isomers have different properties taste, smell, melting point, boiling point, everything. They are as different as if their elemental compositions were different. This concept is incredibly important. The different properties of skeletal isomers is one reason why there is such a diversity of organic compounds. We have already met another kind of isomer. Eclipsed and staggered ethane (or propane) have the same atom-atom-atom connections, but different shapes. They are stereoisomers. Skeletal isomers and stereoisomers are the two different kinds of isomers. Stereoisomers can be further subdivided into four types. We have already met conformational diastereomers, one of those four types. We will soon meet the other three types. The root "prop-" means "a three-carbon group with the associated hydrogens" Butane & its derivatives. Suppose we want to add one more carbon to propane. We have two different kinds of we can replace, a methylene or a methyl. If we replace the methyl, we have butane. If we replace the methylene, we have an isomer of butane. This isomer of butane has a common or trivial name, isobutane. More systematically, we can think of it as propane with a methyl group on the second carbon, or 2-methylpropane (all one word). If we look down the 1 2 σ bond, we get a picture that is identical to that of propane, except that the Me in propane is replaced by Et. The graph of energy vs. dihedral angle about the 1 2 bond in butane doesn t look terribly different from propane. The 2 3 bond is more interesting. We get two staggered conformational diastereomers (S1 and S2) and two eclipsed conformational diastereomers (E1 and E2). In S2 the two Me groups are as far apart as possible, with a dihedral angle of 180. It is called the anti conformer. In S1, the two Me groups are close 2.14

15 Grossman, E 230 to one another, with a dihedral angle of 60. It is called the gauche conformer. S1 is 0.6 kcal/mol higher in energy than S2. (The terms anti and gauche apply only to staggered conformers.) This difference in energy is due to steric strain, the strain resulting from the two Me groups trying to occupy approximately the same region of space. Me Me Me Me Me Me Me E1 Me E2 S1 S2 eclipsed staggered Among the eclipsed conformers, E1 has two / interactions and one Me/ Me, and E2 has one / and two / Me. Neither has good hyperconjugative interactions, so the difference between them must be due to steric interactions. It turns out that the steric cost of the eclipsed Me/ Me interaction is 1.0 kcal/mol, considerably worse than the steric interaction in S1. We can draw a graph of energy vs. dihedral angle as follows. Energy 0.6 kcal/mol 3.4 kcal/mol 4.4 kcal/mol Me Me Me Me Me Me Me Me Me Me Me Me Me Me gauche anti gauche 2.15

16 Grossman, E 230 Again, the eclipsed conformers are transition states, but the energy required to go through one of the eclipsed conformers is appreciably higher than the energy required to go through the other. Also, the gauche conformer is higher in energy than the anti conformer. This doesn't mean that all of the butane in any particular sample exists only in the anti conformation. There is an equilibrium between the anti and gauche conformations, and the equilibrium constant is calculated by: K = e ( ΔG/ RT) R is the universal gas constant (1.987 cal/mol K) and T is the temperature at which the measurement is being made (usually room temperature, 295 K). Using this formula we determine that for the anti/ gauche equilibrium, K = 4.6 in favor of the anti conformer. So in a given sample of butane, approximately 80% of the material is in the anti conformation and approximately 20% is in the gauche conformation. (Actually, these numbers are not quite right, because we didn t consider that there are two gauche conformations and only one anti, but it gives us a ballpark estimate.) For larger alkanes, we can conduct similar analyses. We will see that the lowest energy conformation is the one in which all dihedral angles are 180. Problem. (2) Of the different conformers of 1-bromo-2-chloroethane that you drew earlier, which are anti, and which are gauche? Let s look more closely at the two gauche conformers of butane, those with dihedral angles of 60 and 300. These two conformers have the same internal dimensions, e.g., the same distances between 1 and 4, the same dihedral angle, etc. Yet the two compounds are not superimposable. One is the nonsuperimposable mirror image of the other. These two structures are conformational enantiomers. Even ethane has enantiomeric conformers. Two of these conformers are shown below. In each conformer, two 's are labeled for reference. The * * dihedral angle of the conformer on the left is somewhere between 0 and 60, say 30. In the conformer on the right, the angle is If you make models of these two conformers, you will see that they are non-identical mirror images of one another. All the internal dimensions (atom-atom distances, dihedral angles, bond angles) are identical, but the two structures are not mutually superimposable. 2.16

17 Grossman, E 230 * * * * Isomerism summary so far: Two structures with the same formula are isomers (or identical). If they have different atom-to-atom connections, they are skeletal isomers. If they have the same atom-to-atom connections, they are stereoisomers (or identical). Stereoisomers that can be converted into one another easily by rotating around σ bonds are conformational stereoisomers. (We will soon meet the other kind of stereoisomer, the configurational stereoisomer.) Stereoisomers that have different internal dimensions (different dihedral angles, atom-to-atom distances, etc.) are diastereomers. Stereoisomers that have the same internal dimensions (different dihedral angles, atom-to-atom distances, etc.), but are still not superimposable (because they are mirror images), are enantiomers. You need to make models to understand these points! Suppose we want to make a bromo derivative of butane and isobutane? In butane, we have two different kinds of atoms, 1 and 2, and in isobutane, we have two different kinds of atoms, 1 and tertiary (3 ), so we have four different kinds of bromobutanes. These are called n-butyl bromide, sec-butyl (or s-butyl) bromide, isobutyl bromide, and tert-butyl (or t-butyl) bromide. The more formal names are 1-bromobutane, 2-bromobutane, 1-bromo-2-methylpropane, and 2- bromo-2-methylpropane. owever, the trivial names for the four butyl groups are very, very commonly used. The abbreviations n-bu (or n Bu), i-bu (or i Bu, or ibu), s-bu (or s Bu), and t-bu (or t Bu) are often used for the four butyl groups. When just Bu is used, it refers to n-bu. butyl n-bu sec-butyl s-bu isobutyl i-bu tert-butyl t-bu The root "but-" means "a four-carbon group with the associated hydrogens". 2.17

18 Grossman, E Pentane & its derivatives. From butane and isobutane we generated four different kinds of bromobutanes, so it would seem we can generate four different kinds of pentanes. owever, replacing a 2 in butane with 3 gives exactly the same compound as replacing a 1 in 2-methylpropane! Both replacements give 2-methylbutane, or isopentane. Replacing a 1 in butane gives pentane, and replacing the 3 in 2-methylpropane gives 2,2-dimethylpropane, or neopentane. There are many different ways to draw a compound such as pentane. The mutual orientations of the different lines can change, and the compound is still pentane. The same is true of any other compound. What matters is the connections between the atoms, not the relative positions of the atoms! One more point. Methane has the formula 4, ethane 2 6, propane 3 8, butane and isobutane 4 10, and the three pentanes The formula for any acyclic alkane is n 2n+2. Problem for home. (3) ow many bromopentanes are there? 2.14 igher alkanes. We now arrive at one of my least favorite subjects: nomenclature. We have learned about methane, ethane, propane, butane, and pentane. Above pentane, the roots of the names derive from the Greek word for that number: hexane, heptane, octane, nonane, decane, undecane, dodecane, etc. The class of compounds is called alkanes. The root of the alkane's name tells you how many atoms there are; the number of atoms in an alkane is given by the formula n 2n+2. A branched alkane is named as follows. Find the longest straight chain in the molecule. That provides the root of the name. Then describe the substituents on that long chain. If the 2.18

19 Grossman, E 230 substituent has one carbon, it is methyl; if two, ethyl, etc. The position of the substituent is described by a number; if there is a choice, the number of the first substituent should be as low as possible. If there is more than one substituent of the same kind, the prefix di-, tri-, etc. is used, and the position of every group must be listed. If there is more than one substituent of different kinds, they are listed alphabetically, and the first substituent in the name should have the lowest number. You can use i-pr, s-bu, i-bu, and t-bu as substituent names. 2-methylhexane 3-ethylpentane 3,3-dimethylhexane 5-butyl-4-ethyl-2-methyldecane 2,3,3-trimethylpentane I do not expect you to name compounds. I do expect you to be able to draw a compound that I name ycloalkanes. Let's take pentane and remove one from each of the terminal atoms. Then let's join the terminal two atoms. The structure we have now has the formula We call it cyclopentane. In fact, we can make cyclic alkanes of any size. A three-membered ring is cyclopropane, a four-membered ring is cyclobutane, a six-membered ring is cyclohexane, etc. The number of atoms in a cycloalkane is given by the formula n 2n. When we have a cycloalkane with a single substituent, for example a fluorine atom on a sixmembered ring, we call it fluorocyclohexane. No number is needed, because the ring has no beginning and no end. We can have alkyl substituents on an alkane: for example, isopropylcyclopropane. If we have more than one substituent, the alphabetically first substituent is at position 1, and the other substituent is numbered relative to the first one and as low as possible: for example, 1-fluoro-3-iodocyclooctane (not 1-fluoro-5-iodocyclooctane). 2.19

20 Grossman, E 230 Let's look at cyclopropane from the side. The three atoms are in a plane; three atoms, one on each atom, point up, and three point down. Let's change one of the atoms on one to a Br group, and let's change another atom on another to a Br group. We get 1,2-dibromocyclopropane. There are two different kinds of 1,2-dibromocyclopropane that we can get, though. In one of them the two Br groups are on the same side of the ring; in the other, they are on opposite sides of the ring. These two compounds have different shapes. The only way to convert one of them into the other is to break a bond. Because they have different shapes, they have different properties. For example, the one with the two Br atoms on the same side of the ring has a much larger dipole moment than the other. The one with the two Br atoms on opposite sides is much thicker than the other. Br + Br Br Br ere again we have stereoisomers, because the atom-to-atom connections are the same, but the structures are not identical. In this particular case, the internal dimensions of the compounds are different (look at the Br Br distance and the Br Br dihedral angle), so the compounds are diastereomers. owever, these compounds are not conformational diastereomers, because they can't be interconverted by rotations without breaking covalent bonds. As a result, they are called configurational diastereomers (our third kind of stereoisomer). onfigurational diastereomers have different melting and boiling points, different reactivities, different spectral behavior...; in short, they are completely different chemical entities. If you could separate conformational diastereomers, the same would be true of them; however, conformational diastereomers usually interconvert so rapidly on the time scale in which we operate that we can't separate them and examine their properties. As a result, we don't usually think of conformational diastereomers as being different compounds. In fact, if someone uses the word "diastereomer" without specifying conformational or configurational, you should assume that they mean configurational diastereomer. (See my online stereochemical glossary.) 2.20

21 Grossman, E 230 Two groups that reside on the same side of a ring are called cis. Two groups that reside on opposite faces of a ring are called trans. The two compounds above would be called trans-1,2- dibromocyclopropane and cis-1,2-dibromocyclopropane. Any time you have at least two atoms, each of which has two non-identical groups attached, in a ring of any size, you can have cis trans isomers. We used the hashed wedged line convention to denote cis trans isomers. E.g., for 1,2-dibromocyclopropane, we write the following. (Some people use dashed lines instead of hashed lines, but dashed lines can have several different meanings, so hashed lines are better.) Note that the doubly wedged and doubly hashed structures that are drawn for the cis isomer are identical; if we pick one up out of the plane of the paper, flip it over, and put it back down, we get the other. This is not true of the two trans structures that are drawn; these represent examples of the fourth class of stereoisomers, configurational enantiomers. Enantiomers are nonsuperimposable mirror images of one another. One pair of enantiomers that is very familiar to you is your hands. Your left hand is an enantiomer of your right hand. The two feature the same shape, the same pinkieto-thumb distance, etc., but they are non-superimposable mirror images.! Br Br Br Br Br Br Br Br cis-1,2-dibromocyclopropane trans-1,2-dibromocyclopropane Diastereomers have different internal dimensions, i.e. dihedral angles and distances between nonbonded atoms for example, the two Br atoms in cis-1,2-dibromocyclopropane are closer than they are in trans-1,2-dibromocyclopropane while enantiomers have identical internal dimensions. Enantiomers have identical energies, whereas diastereomers differ in energy. Some compounds don t have enantiomers; for example, cis-1,2-dibromocyclopropane is identical to its mirror image. We will talk about enantiomers in much greater detail soon. You must make models to understand the concept of stereoisomerism of cycloalkanes! Note well that if I use the term isomers, I could be referring to any kind of isomer: constitutional isomer, stereoisomer, diastereomer, or enantiomer. 2.21

22 Grossman, E 230 Problem. (3) Which of the cyclic skeletal isomers of 5 10 and 6 12 have cis and trans isomers? Draw them using the hashed/ wedged line convention. Many organic compounds have more than one ring. A compound can rings that are isolated, spiro, fused, or bridged, depending on whether they share 0, 1, 2, or >2 atoms. Any alkane with m rings in it has the formula n 2(n m+1). 2.22