Polarized exocytosis and transcytosis of Notch during its apical localization in Drosophila epithelial cells

Size: px
Start display at page:

Download "Polarized exocytosis and transcytosis of Notch during its apical localization in Drosophila epithelial cells"

Transcription

1 Polarized exocytosis and transcytosis of Notch during its Blackwell Malden, GTC Genes Original Notch The Sasaki to Author. epithelial USA Article et Cells Publishing al. Journal signal Inc compilation needs apical location 2006 by the Molecular Biology Society of Japan/Blackwell Publishing Ltd. apical localization in Drosophila epithelial cells Nobuo Sasaki 1, Takeshi Sasamura 1,2, Hiroyuki O. Ishikawa 3, Maiko Kanai 1,2, Ryu Ueda 4, Kaoru Saigo 5 and Kenji Matsuno 1,2,3, * 1 Department of Biological Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba , Japan 2 PRESTO, JST, Honcho, Kawaguchi, Saitama, Japan 3 Genome and Drug Research Center, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba , Japan 4 Genetic Strains Research Center, National Institute of Genetics, 1111 Mishima, Shizuoka , Japan 5 Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Hongo, Bunkyo-ku, Tokyo , Japan Notch (N) and its ligands, Delta (Dl) and Serrate (Ser), are transmembrane proteins that mediate the cell cell interactions necessary for many cell-fate decisions. In Drosophila, N is predominantly localized to the apical portion of epithelial cells, but the mechanisms and functions of this localization are unknown. Here, we found N, Dl, and Ser were mostly located in the region from the subapical complex (SAC) to the apical portion of the adherens junctions (AJs) in wing disc epithelium. N was delivered to the SAC/AJs in two phases. First, polarized exocytosis specifically delivered nascent N to the apical plasma membrane and AJs in an O-fut1-independent manner. Second, N at the plasma membrane was relocated to the SAC/AJs by Dynamin- and Rab5- dependent transcytosis; this step required the O-fut1 function. Disruption of the apical polarity by Drosophila E-cadherin (DEcad) knock down caused N and Dl localization to the SAC/AJs to fail. N, but not Dl, formed a specific complex with DEcad in vivo. Finally, our results suggest that juxtacrine signaling in epithelia generally depends on the apicobasally polarized structure of epithelial cells. Introduction Cell differentiation during development is often regulated by local cell cell interactions, many of which involve signaling by the Notch (N) family of receptors (reviewed by Artavanis-Tsakonas et al. 1999). The extracellular domain of N consists largely of tandemly repeated epidermal growth factor-like (EGF) domains (Wharton et al. 1985). Extracellular interactions between N and its ligands, Delta (Dl) and Serrate (Ser), trigger sequential proteolytic cleavages of N, which consequently induce proteolysis of the N transmembrane domain by γ- Secretase (Brou et al. 2000; Struhl & Greenwald 2001). The intracellular domain of N is then liberated from the plasma membrane and translocates to the nucleus, where it acts as a co-activator of transcription (Schroeter et al. 1998; Struhl & Adachi 1998). Communicated by: Shinichi Aizawa *Correspondence: matsuno@rs.noda.tus.ac.jp N is expressed in various epithelial tissues, such as the Drosophila neuroectoderm and imaginal disc, during cellfate specifications, in which N signaling plays crucial roles (Fehon et al. 1991). In these apicobasally polarized epithelial cells, the plasma membranes are subdivided into apical and basolateral domains that are separated by specialized junctional structures, the adherens junction (AJ) and septate junction (reviewed by Müller 2000; Tepass et al. 2001; Roh & Margolis 2003). The formation and stabilization of these junctions are paramount for the maintenance of epithelial polarity, which, in turn, is required for proper epithelial cell physiology, cell motility, asymmetric division, and intercellular signaling (reviewed by Tepass et al. 2001). Many of these processes rely on the polarized distribution of plasma membrane proteins. Recent studies revealed that the polarized organization of post-golgi trafficking, which depends on actin and microtubules, is important for the guidance of apical and basolateral proteins (reviewed by Rodriguez-Boulan et al. 2005). In DOI: /j x 2007 The Authors Genes to Cells (2007) 12,

2 N Sasaki et al. addition, some sorting signals, such as N-glycans and O-glycans, and proteins for the docking and fusion of vesicles in polarized trafficking have been identified (reviewed by Rodriguez-Boulan et al. 2005). N and Dl are localized to the apical region of epithelial cells in Drosophila (Fehon et al. 1991; Bender et al. 1993; Kooh et al. 1993). Hence, the N signaling pathway must be integrated into the concept of how these polarized structures in epithelial cells function. However, the mechanisms and function of N s apical localization are unknown. Here, we investigated how N and its ligands are delivered to specific regions of the polarized epithelial cells in the third-instar larval wing disc. We suggest that the apicobasally polarized structure may be a general requirement for the juxtacrine cell signaling that takes place in epithelial cells. Results N localized to the SAC and AJs in the wing disc epithelium In the apical region of epithelial cells where N is located, we first investigated by studying the third-instar larval wing disc. To study the Notch (N) localization at high resolution, we performed deconvolution analysis of confocal microscope images. The wing disc epithelium develops typical apicobasally polarized structures (Woods et al. 1997; Müller 2000). As shown schematically in Fig. 1A, the SAC, AJs, and lateral region were distinguished by antibody staining with anti-atypical protein kinase C (apkc), anti-decad, and anti-discs large (Dlg) antibodies, respectively. These antibodies specifically defined these three regions, because the staining patterns of the anti-decad and anti-apkc, and with anti-decad and anti-dlg, did not overlap (Supplementary Fig. S2A,B). The localization of apkc and N overlapped, indicating that most of the N was localized to the SAC (Fig. 1B). N staining overlapped with the apical portion of DEcad and of Armadillo, which labels AJs (Fig. 1C and data not shown). In contrast, N and Dlg, which marks septate junctions, were detected in mutually exclusive patterns (Fig. 1D). Therefore, N associated with the plasma membrane was concentrated at the SAC and AJs (SAC/ AJs) in the wing disc epithelium. We also found that Dl and Ser were predominantly localized to the SAC/AJs and colocalized with N in these cells (Supplementary Fig. S1A D). N localized normally to the SAC/AJs in cells that were double mutants for Dl and Ser (Fig. 1E). In addition, the ligands localization was unaffected in cells bearing a N mutation (Fig. 1F). Thus, N and its ligands localized to the SAC/AJs independently. The localization of N to SAC/AJs is dependent on its O-fucosylation The EGF domains of N receptors are modified by the addition of fucose to serine or threonine residues (O-fucose) (Moloney et al. 2000). This O-linked fucosylation is catalyzed by the GDP-fucose protein O-fucosyltransferase (O-FucT-1), O-fut1 in Drosophila (Wang et al. 2001), and this fucosylation is essential for N signaling and its ligand interactions (Lei et al. 2003; Okajima & Irvine 2002; Okajima et al. 2003; Sasamura et al. 2003). N did not localize normally to the SAC/AJs in somatic clones of an O-fut1 mutant (O-fut1 ) (Fig. 1G). However, the localization of Dl to the SAC/AJs was not affected in the O-fut1 cells (Fig. 1H). Therefore, although both N and Dl localized to the SAC/AJs, their requirement for O- fut1 was different. O-fut1 is reported to act as a chaperon for N, independent of its O-fucosyltransferase activity, and misfolded N accumulates in the endoplasmic reticulum (ER), owing to the quality-control mechanism (Okajima et al. 2005). Thus, it is possible that N failed to localize to the SAC/AJs because of misfolding or defective transportation to the plasma membrane due to the lack of the enzymatic activity-independent function of O-fut1. Alternatively, a lack of N O-fucosylation could be responsible for the failure of N localization. To distinguish among these possibilities, we studied the distribution of N in mutants of the GDP-d-mannose 4, 6-dehydratase (GMD) gene. In Drosophila, GDP-fucose is thought to be synthesized only through the de novo pathway, for which GMD is indispensable (Roos et al. 2002). Homozygotes of Gmd H78, which lack most Gmd exons, barely survived to the third-instar larval stage (data not shown; Okajima et al. 2005), and N failed to localize to the SAC/AJs in the epithelial cells of their wing discs, suggesting that the O-fucosylation of N is essential for its localization to the SAC/AJs (Fig. 1I). In Gmd H78 wing discs, N accumulation in the intracellular vesicles, which occurred in the O-fut1 cells, was not observed (Fig. 1I). This was most likely because the N accumulation is caused by the lack of an O-fut1 function that is independent of its O-fucosylation enzymatic activity, as proposed previously (Okajima et al. 2005), and this activity is maintained normally in Gmd mutants. In addition, we found that, in the cells of the Gmd H78 wing discs, N was expressed in vesicles of endocytic origin (T.S., I.H.O., N.S., Syunsuke Higashi, M.K., Shiho Nakao, Tomonori Ayukawa, Toshiro Aigaki, Katsuhisa Noda, Eiji Miyoshi, Naoyuki Taniguchi, & K.M, submitted). Therefore, the O-fucosylation of N is not an essential requirement for its endocytic transportation. On the other hand, both O-fut1 and Gmd are indispensable for 90 Genes to Cells (2007) 12, The Authors

3 Notch epithelial signal needs apical location Figure 1 N localized to the SAC/AJs in the epithelium of the wing disc, which required its O-fucosylation. (A) Hallmarks of the basic epithelial cell structure in invertebrates. The junctional complexes of epithelial cells are illustrated in the boxed area. Domains in the polarized epithelium of the wing discs, the SAC (magenta), AJs (green), and basolateral domain (light blue), are shown. Markers used in this study are indicated in parentheses. (B) N (magenta) was mostly localized to the SAC marked by apkc (green). (C) N (magenta) colocalized with the apical AJs, visualized by DEcad staining (green). (D) N (magenta) did not localize to the basolateral region marked by Dlg (green). (E) N (magenta) localized to the SAC/AJs, which were partly marked by DEcad (green), in Dl and Ser double-mutant clones ( Dl Ser and white dotted lines). (F) Dl (magenta) and Ser (green) were colocalized in N mutant clones ( N and white dotted lines). (G) N (magenta) colocalized with DEcad (green), a marker for AJs, in wild-type cells. However, N localization was disrupted in O-fut1 cells ( O-fut1 and white dotted lines). (H) Dl (magenta) localized to AJs, marked by DEcad (green) both in wild-type and O-fut1 cells ( O-fut1 and white dotted line). (I) N (magenta) did not localize to AJs, marked by DEcad (green), in the wing disc of the Gmd H78 mutant. (J) Dl (magenta) localized to AJs, marked by DEcad in the wing disc of the Gmd H78 mutant. Each right panel shows the merged image of the corresponding left and middle panels. Each bottom panel shows a vertical cross-section of the corresponding upper panel The Authors Genes to Cells (2007) 12,

4 N Sasaki et al. the normal localization of N to the SAC/AJs, suggesting that the O-fucosylation of N is essential for this trafficking process. Conversely, Dl was still localized to the SAC/AJs in these mutant discs (Fig. 1J), although it is a known substrate for O-fut1 (Panin et al. 2002). Therefore, O-fucosylation of N is specifically required for its proper localization in epithelial cells. Delivery of nascent N by polarized exocytosis did not require O-fut1 We next investigated how N localizes to the SAC/AJs. First, we examined whether N was targeted to these structures during exocytosis. To address this issue, we expressed N + -GV3 under the control of a heat-shock (HS) promoter in the epithelial cells of the third-instar larval wing disc. N + -GV3 is a N derivative with a Gal4-VP16 domain insertion just below the transmembrane domain, and is otherwise wild-type (Struhl & Adachi 1998). N + - GV3 functions like wild-type N in vivo (Struhl & Adachi 1998). The subcellular localization of N + -GV3 was detected with an anti-gal4 antibody at various time points. We also investigated how the delivery of nascent N was affected in O-fut1 cells, in which N fails to localize to the SAC/AJs, which we hoped would give us insight into the mechanisms of this N localization. The expression of N + -GV3 was not detected either before HS or 0 min afterwards in wild-type or O-fut1 cells (Fig. 2A,B). N + -GV3 was first observed as small vesicles in the basal region of wild-type and O-fut1 epithelial cells 5 min after HS (Fig. 2C, arrowheads in vertical section). Large numbers of vesicles containing N + -GV3 were observed at the level of the AJs min after HS. Some of these vesicles colocalized with DEcad in wild-type and O-fut1 cells (Fig. 2D,E). These data suggested that nascent N is delivered to AJs or their vicinity by exocytotic vesicles. Furthermore, we found that the majority of these vesicles did not colocalize with ER (protein disulfide isomerase (PDI)-GFP), Golgi (GM-130), or early endosome (Hrs) markers in wild-type and O-fut1 cells (Fig. 2F H), consistent with the idea that N + -GV3 was in post-golgi transport vesicles under these conditions (Lloyd et al. 2002; Bobinnec et al. 2003; Yano et al. 2005). Under the same conditions, we studied the delivery of nascent N to the apical plasma membrane, SAC, and basolateral region, in addition to the AJs. The apical plasma membrane, SAC, and basolateral region stained with phalloidin, an anti-apkc antibody, and an anti- Coracle (Cora) antibody, respectively. As described above, we confirmed that apkc, DEcad, Dlg, and F-actin were located in distinct regions with respect to the apicobasal axis of the wing disc epithelium (Supplementary Fig. S2A C). Although apkc and F-actin showed some overlap, these two regions could be distinguished by the markers (Supplementary Fig. S2D). As shown in Fig. 3A, the delivery of N + -GV3 to these regions was analyzed quantitatively. A set of serial X Y section images from the apical to basal ends of each marker was obtained, and all the images were overlaid (Fig. 3A). The percentage of the N + -GV3 vesicles that overlapped with each marker was then calculated (Fig. 3C,F). These analyses revealed that N-positive vesicles showed significant colocalization with DEcad, a marker for AJs, at 44% in wild-type (n = 416), and 46% in O- fut1 cells (n = 135) 15 min after HS (Figs 2D and 3C). However, in wild-type cells, only 8.8% of the vesicles containing N colocalized with Cora, a marker for septate junctions in the basolateral region of epithelial cells (n = 204), and 13% did in O-fut1 cells (n = 55), indicating that these vesicles preferentially approached the plasma membrane at the AJs rather than at the basolateral region (Fig. 3B,C) (Lamb et al. 1998). These vesicles also colocalized with the AJ marker at 46% in wild-type (n = 244) and 41% in O-fut1 cells (n = 82) 30 min after HS (Figs 2E and 3F). Similarly, 49% of the N-positive vesicles were seen colocalized with F-actin in wild-type (n = 238) and 52% in O-fut1 cells (n = 148) (Fig. 3D, F). However, unexpectedly, we found that nascent N was not delivered efficiently to the SAC, where most of the N was detected in these cells. Only 12% of the vesicles containing N colocalized with apkc, a marker for SAC, in wild-type (n = 157) and 10% in O-fut1 (n = 49) cells (Fig. 3E,F). Together, our results suggest that the nascent N was delivered to the AJs and the apical plasma membrane by polarized exocytosis (summarized in Fig. 8). Importantly, the delivery of nascent N to all the regions examined was not affected in O-fut1 cells 30 min after HS (Fig. 3C,F), although N ultimately failed to localize there in the O-fut1 cells. To confirm that N was delivered normally to the membrane surface in O-fut1 cells, we cultured live wing discs with an antibody against the extracellular domain of N (rat 1) (Fehon et al. 1990). Wild-type cells showed surface staining with this antibody (Fig. 3G,H), which was largely absent in N cells, indicating that N protein at the cell surface was detected specifically (Fig. 3G). Under the same conditions, we found that the surface staining of N was not significantly reduced in the O-fut1 cells (Fig. 3H). These results were consistent with our idea that the delivery of N mutant (N ) to the cell surface was largely normal in O-fut1 cells. Taking these results together, the delivery of N to the AJs and the apical plasma membrane was probably not sufficient for it to accumulate in the SAC/AJs. 92 Genes to Cells (2007) 12, The Authors

5 Notch epithelial signal needs apical location Figure 2 Nascent N was detected in post- Golgi transport vesicles by 30 min after HS. O-fut1 somatic clones are indicated by O-fut1 and white dotted lines. N + -GV3 was detected by staining with an anti-gal4 antibody (Gal4, green). (A) N + -GV3 was not detected before the HS in wild-type and O-fut1 cells, marked by the lack of the GFP marker (cyan). (B) Zero minutes after HS. (C) five minutes after HS N + -GV3 was first detected in small vesicles at the basal region (arrowheads in vertical section). (D) Fifteen minutes after HS. (E) Thirty minutes after HS. AJs were labeled by staining with an anti-decad antibody (A-E; magenta). (F, G) Fifteen minutes after HS. N + -GV3 was not colocalized with ER (F; magenta) or Golgi (G; magenta). (H) Thirty minutes after HS. N + -GV3 also did not overlap with Hrs (magenta), an early endosome marker. The right-hand panels are merged images of each marker and Gal4 staining. Each bottom panel shows a vertical cross-section of the corresponding upper panel. Nascent N accumulated at SAC/AJs via a transcytotic pathway We had observed the first difference in N localization in O-fut1 cells compared with wild-type cells at 45 min after HS. Thus, the appropriate localization of N to the SAC/AJs seemed to depend on some O-fut1 function at this time point. Vesicles containing N + -GV3 at the level of the AJs became larger 45 min after HS in both wildtype and O-fut1 cells. In wild-type cells, 48% of these large vesicles containing N + -GV3 colocalized with the AJs (n = 588) (Fig. 4A,C). In contrast, in the O-fut1 cells, only 13% of these vesicles colocalized with the AJs (n = 223) (Fig. 4A,C). N + -GV3 localization overlapped with the SAC/AJs in a honey-comb pattern in wild-type cells, but not in O-fut1 cells, 90 min after HS 2007 The Authors Genes to Cells (2007) 12,

6 N Sasaki et al. Figure 3 Nascent N was delivered to the apical plasma membrane and AJs by polarized exocytosis. O-fut1 somatic clones are indicated by O-fut1 and white dotted lines (B, D, E, G). N somatic clones are indicated by Notch and white dotted lines (H). N + -GV3 was detected by staining with an anti-gal4 antibody (green) (B, C, E). (A) Schematic presentation of the procedure used to quantify the efficiency of N + -GV3 delivery by polarized exocytosis. The percentage of N + -GV3 vesicles that overlapped with each marker was calculated. (B) Wing discs were double stained with an anti-gal4 antibody (green) and an anti-cora antibody (magenta), a marker for septate junctions, 15 min after HS. (C) The percentage of vesicles that localized to the AJs (DEcad) or the basolateral region (Cora) 15 min after HS in wild-type and O-fut1 cells is shown. (D) Wing discs were double stained with an anti-gal4 antibody (green) and rhodamine phalloidin (magenta), which labels F-actin, a marker for the apical plasma membrane, 30 min after HS. (E) Wing discs were double stained with an anti-gal4 (green) and an anti-apkc antibody (magenta) 30 min after HS. (F) The percentage of vesicles that localized to the AJs (DEcad), SAC (apkc), and apical surface (F-actin), 30 min after HS in wild-type and O-fut1 cells. (G, H) The wing discs of third-instar larvae were dissected and cultured in medium with an antibody against the extracellular domain of N (rat1). N protein at the cell surface was detected (magenta). O-fut1 (G) and N (H) clones were identified by the lack of GFP (green). (C, F) Error bars represent the S.D. obtained from at least three independent experiments. (B, D, E, G, H) Right-hand panels show merged images of each marker and Gal4 staining. Each bottom panel shows a vertical cross-section of the corresponding upper panel. (Fig. 4B). Thus, there was a characteristic time lag between the delivery of nascent N by post-golgi transport vesicles and the accumulation of N at the AJs. Given this characteristic time lag nascent N s delivery by post-golgi transport vesicles and its accumulation at the AJs, we speculated that the localization of N to the SAC/AJs involves two steps. First, nascent N is transported to AJs and the apical plasma membrane by polarized exocytosis, which occur independent of O-fut1. Second, N translocates to the SAC/AJs by transcytosis or 94 Genes to Cells (2007) 12, The Authors

7 Notch epithelial signal needs apical location Figure 4 Delivery of nascent N depended on its O-fucosylation. O-fut1 somatic clones are indicated by O-fut1 and white dotted lines (A, B, D). N + -GV3 was detected by staining with an anti-gal4 antibody (green). (A) Forty-five minutes after HS. N + -GV3 puncta (green) abutted the AJs (magenta) only in wild-type cells. (B) Ninety minutes after HS. N + -GV3 (green) was localized to AJs (magenta) in wild-type cells, but this localization was rarely observed in O-fut1 cells. (C) The percentage of N + -GV3 vesicles that localized to the AJs (DEcad) 45 min after HS in wild-type and O-fut1 cells is shown. Error bars represent the S.D. obtained from six independent experiments. (D) Forty-five minutes after HS. A small portion of N + -GV3 (green) positive vesicles was co-stained with an anti-rab11 antibody (magenta) in wild-type cells (arrowheads), but this co-staining was hardly detected in O-fut1 cells. The right-hand panels show merged images of each marker and Gal4 staining. Each bottom panel shows a vertical cross-section of the corresponding upper panel. some other mechanism, such as diffusion on the plasma membrane, in an O-fut1-dependent manner. To elucidate the presumed second step in N transport, we next investigated the nature of the vesicles containing N + -GV3 45 min after HS. Rab11 is a marker for the recycling endosomes that play a key role in transcytosis (Ullrich et al. 1996; Dollar et al. 2002). We found that a portion of the N + -GV3 vesicles was co-stained with an anti- Rab11 antibody in wild-type cells, while this co-staining was significantly reduced in O-fut1 cells (Fig. 4D). Thus, we speculated that the delivery of N to SAC/AJs involves the Rab11-positive recycling endosomes. Next, we examined whether endocytosis is required for the localization of N to the SAC/AJs. It was demonstrated that the disruption of Dynamin function efficiently suppresses transcytosis in Drosophila epithelial cells (Parks et al. 2000). Dynamin is required during endocytosis for the formation and pinching off of clathrin-coated vesicles from the plasma membrane (reviewed in Le Borgne et al. 2005). shibire TS1 (shi TS1 ) is a temperature-sensitive allele of the Drosophila Dynamin gene (Grigliatti et al. 1973; van der Bliek & Meyerowitz 1991). A reduction in shi function in the developing wing disc at the non-permissive temperature (32 C) for 20 min resulted in a decrease in the amount of N at SAC/AJs (Fig. 5B compared with 5A). Because a reduction in Dynamin function for only a short time was sufficient to disrupt the localization of N to SAC/AJs, it is likely that inhibition of Dynamindependent transcytosis directly affected the localization of N to SAC/AJs. The localization of N to the SAC/AJs was drastically disrupted in shi TS1 wing discs at 32 C after 8 h (Fig. 5C). In these wing discs, N was mostly detected in vesicles in the apical region (Fig. 5C, vertical section). In contrast, the localization of DEcad was largely unaffected by holding the discs at 32 C for 20 min or for 8 h (Fig. 5B,C). Under these conditions, ectopic apoptosis was not induced (data not shown). Furthermore, the localization of N and DEcad in wildtype discs was not affected after 20 min or 8 h at 32 C (Fig. 5D and data not shown). These results suggest that the Dynamin-dependent transcytosis of N is required for its localization to the SAC/AJs. Rab5 is required for the fusion of endocytic vesicles with the apical sorting endosomes, which is necessary for transcytosis (Bucci et al. 1992). To test whether Rab5 is required for the localization of N to SAC/AJs, Rab5DN, a dominant-negative form of Rab5 was expressed in the epithelial cells of the wing disc (Shimizu et al. 2003) The Authors Genes to Cells (2007) 12,

8 N Sasaki et al. Figure 5 N localization to SAC/AJs required Dynamin-dependent transcytosis. (A C) In the wing discs of the shi temperature-sensitive mutant, shi TS1, N (green) localized to the SAC/AJs, marked by DEcad (magenta), at 18 C (A; permissive temperature). However, the amount of N localized to the SAC/AJs decreased after 20 min at 32 C (B; non-permissive temperature), and the N localization was disrupted after 8 h at 32 C (C; nonpermissive temperature). (C) In the vertical section, N was detected in vesicles at the apical region (arrowheads). (D) N localization (green) and AJ (magenta) formation were not affected in the wildtype wing disc cultured for 8 h at 32 C. (E, F) Rab5DN was expressed in a temperature-sensitive manner. (E) At 18 C, Rab5DN expression was suppressed, and the localization of N (green) to AJs (magenta) was normal. (F) N (green) localization to AJs (magenta) was disrupted after 8 h of Rab5DN expression at 32 C (arrowheads in vertical section). The righthand panels show merged images of N and DEcad staining. Each bottom panel shows a vertical cross-section of the corresponding upper panel. Using the TARGET method, Rab5DN expression was induced by a temperature shift from 18 C to 32 C (McGuire et al. 2004). N failed to localize to the SAC/ AJs in these cells after 8 h (Fig. 5E,F). These results supported the idea that the transcytosis of N contributes to N s localization to the SAC/AJs (summarized in Fig. 8). The localization of N and Dl to the SAC/AJs required DEcad Disruption of the AJs is known to prevent proper SAC formation (Bilder et al. 2003; Tanentzapf & Tepass 2003). The expression of double-stranded RNA (dsrna) corresponding to DEcad mrna, driven by patched-gal4 (ptc-gal4) or MS1096-Gal4, reduced the level of DEcad protein (Fig. 7B, magenta and data not shown). However, the knock down of DEcad also induced apoptosis under these conditions (data not shown). Thus, to suppress this apoptosis, we simultaneously expressed DIAP (Inhibitor of apoptosis 1), which effectively blocked the apoptosis, with the dsrna of DEcad (Kuranaga et al. 2002). We found that N and Dl failed to localize to the SAC/AJs in these cells (Fig. 6A). This result was not owing to a reduced amount of N and Dl (Fig. 6B). The knock down of DEcad in the wing discs disrupted the localization of apkc, a marker for the SAC, while basolateral components, such as septate junctions, marked by Cora, still formed, suggesting the epithelial structure was maintained, at least in part (Fig. 6C). In addition, N did not colocalize with the vast majority of the apkc in DEcad knock down cells, although N was still localized to the apical region of these cells (Fig. 6D). The specific localization of N and Dl to SAC/AJs may be accounted for, at least in part, by the formation of complexes that involve proteins in these regions. To address this possibility, we examined whether N and Dl formed a stable complex with DEcad or Dlg. An anti-n antibody (9C6) co-precipitated DEcad from embryonic extract (Fig. 6E). In contrast, an anti-dl antibody did not co-precipitate DEcad, although we demonstrated both N and Dl colocalized with DEcad. On the other hand, the anti-n antibody did not co-precipitate Dlg (Fig. 6E). Together, our results suggest that N specifically interacted with DEcad. 96 Genes to Cells (2007) 12, The Authors

9 Notch epithelial signal needs apical location Figure 6 Localization of N and Dl to the SAC/AJs required DEcad. (A, C, D) Wing discs isolated from UAS-DIAP/+; ptcgal4/uasshg IR third-instar larvae. White dotted lines indicate the anterior-posterior boarder. The left side of the line expressed the double-stranded RNA of DEcad and DIAP, and the right side was wild-type cells. (A) The localizations of N (magenta) and Dl (green) were disrupted where DEcad was decreased (left side). (B) Western blot of protein extracts prepared from the wing discs of wild-type and MS1096- Gal4/+ UAS-shgIR/+ flies. The upper panel shows the N protein detected with an anti-n antibody. The second and third panels show the blots reprobed with an anti-dl antibody, and anti-decad antibody. The lower panel shows the same blot after being stripped and reprobed with an anti-β-tubulin antibody, which was the loading control. (C) The reduction of DEcad disrupted the apicobasal polarity. Cora (magenta), a basolateral marker, was detected at the apical region, where apkc (green) failed to localize. (D) Higher magnification of the region where DEcad was decreased. N (magenta) was not colocalized with apkc (green), a marker for SAC, in this region. (E) Immunoblots of complexes immunoprecipitated with normal mouse serum (M Ig), a mouse anti-n antibody, and a mouse anti-dl antibody. Blots were probed with anti-decad (upper) or anti-dlg (bottom) antibodies, revealing a specific association between N and DEcad in vivo. Immunoblots of total embryonic extract probed with the anti-decad and anti-dlg antibodies are also shown (Extract). The right-hand panels show merged images of the left and middle panels. Each bottom panel shows a vertical cross-section of the corresponding upper panel. DEcad was required for epithelial N signaling Given that the localization of N to SAC/AJs required DEcad, N signaling might depend on DEcad expression on polarized epithelial cells. Wingless (Wg) and Cut are targets of N signaling expressed in the dorsoventral compartment boundary of the third-instar larval wing disc (Fig. 7A,C) (Neumann & Cohen 1996). We found that the knock down of DEcad by RNAi reduced the Wg and Cut expression, when cell death was prevented by DIAP expression, indicating that N signaling was suppressed (Fig. 7B, arrowhead and data not shown). In contrast, as indicated by the arrows in Fig. 7B, Wg expression around the wing pouch was expanded. Fat signaling is known to inhibit this Wg expression in wild-type cells (Cho & Irvine 2004). The fat gene encodes a transmembrane receptor that is activated by the transmembrane ligand, Dachsous (Mahoney et al. 1991; Clark et al. 1995). This expansion in Wg expression suggested that Fat signaling decreased in these cells (Cho & Irvine 2004). These results suggest that the knock down of DEcad generally interferes with cell cell interactions that are mediated by interactions between transmembrane receptors and ligands. On the other hand, over-expressed DEcad driven by MS1096-Gal4 in the wing pouch (Fig. 7F) increased the number of cells expressing Cut at 18 C around the dorsoventral compartment boundary, indicating that N 2007 The Authors Genes to Cells (2007) 12,

10 N Sasaki et al. Figure 7 N signaling requires DEcad in the epithelial cells. (A) The expression of Wg, a target of N signaling, was detected at the dorsoventral compartment boundary (arrowhead) in wild-type wing discs. (B) A wing disc of UAS-DIAP/+ ptc-gal4/uas-shg IR. In the wing discs expressing double-stranded DEcad RNA driven by ptc-gal4, Wg expression decreased at the anterior-posterior border region where these two were expressed (arrowhead). On the other hand, Wg expression around the wing pouch was independent of N signaling and restricted by Fat signaling. This Wg expression was expanded where DEcad (magenta) decreased (arrow). (C) The expression pattern of Cut, another target of N signaling, in wild-type wing discs. (D, E) Wing discs over-expressing DEcad, MS1096-Gal4/+;UASshg GFP/+, at 18 C (D), or 25 C (E). The insets in (C-E) show higher magnification of the Cut expression at the regions indicated by arrowheads. (F) The expression pattern of Gal4 driven by MS1096 was visualized using a GFP reporter (green). signaling was augmented there (Fig. 7D compared with 7C) (Oda & Tsukita 1999). This increase was not due to ectopic proliferation of the wing pouch cells (Supplementary Fig. S3D,E). In these wing discs, the localization of N and Dl extended basally, which may have been responsible for the augmented N signaling (Supplementary Fig. S3B). However, an even higher level of DEcad expression, obtained at 25 C, partially inhibited N signaling. This was most likely because the epithelial cell morphology was severely disrupted (Fig. 7E, Supplementary Fig. S3C), resulting in the disruption of normal ligand receptor interactions, and consequently impairing N signaling. In these wing discs, ectopic apoptosis was not detected (data not shown). Discussion Polarized exocytosis and Dynamin-dependent transcytosis have roles in N transportation to SAC/AJs Polarized vesicular transportation has been reported for many secreted and membrane proteins in epithelial cells (Rodriguez-Boulan et al. 2005). However, the mechanisms of these processes are not well understood. In this study, we showed that N and its ligands predominantly localized to the SAC/AJs in the polarized epithelium of the wing disc. Our results suggest that the localization of N to the SAC/AJs involves two distinct vesicular transportation events (Fig. 8). First, nascent N is transported toward the apical plasma membrane or AJs by polarized exocytosis, which is independent of N O-fucosylation. Second, N is relocated by Dynamin- and Rab5-dependent transcytosis to the SAC/AJs, and this step depends on a novel function of N O-fucosylation by O-fut1. In the first step of this N transportation, N is delivered by polarized exocytosis. Although the mechanisms of polarized exocytosis remain largely unknown, the polarized transportation of vesicles to the apical membrane proteins is reported to involve a tetanus-insensitive -SNARE and the syntaxin family (Galli et al. 1998; Low et al. 1998). Unexpectedly, N was not delivered to the SAC by polarized exocytosis, although most of the N was localized there, but N was efficiently transported to the other apical regions, in these cells. Therefore, our results suggest that polarized exocytosis could be regulated very precisely when post-golgi transport vesicles select their targets. The mechanisms responsible for the observed preferential transportations are presently unknown. One possible explanation for this preferential vesicle transportation is that docking and fusion machineries for the N-containing vesicles may be localized to highly specific regions with respect to apicobasal polarity. However, the polarized exocytosis of N is not sufficient for its localization to the SAC/AJs, because N s exocytosis was not disrupted in O-fut1 cells, even though O-fut1 is required for N localization to the SAC/AJs. In our analyses, it was difficult to detect the fusion of N-containing 98 Genes to Cells (2007) 12, The Authors

11 Notch epithelial signal needs apical location Figure 8 A model for N localization to SAC/AJs. (Left) In the first step, the nascent N is delivered by polarized exocytosis to the AJs or the apical surface directly. This process does not require O-fut1. (Right) In the second step, N that was transported to the plasma membrane in the first step is relocated to the SAC and AJs by Dynaminand Rab5-dependent transcytosis. This step depends on the O-fucosylation of N by O-fut1. vesicles with the plasma membrane. However, our live cell labeling with an anti-n antibody supported our idea that this polarized exocytosis occurred normally in the O-fut1 cells. It was previously reported that knocking down O-fut1 by RNA interference results in the accumulation of N in the ER (Okajima et al. 2005). However, our higher-resolution studies, which used a deconvolution analysis, revealed that N did not accumulate in the ER in O-fut1 cells, although we failed to determine the nature of the subcellular compartment in which it did accumulate (T.S., I.H.O., N.S., Syunsuke Higashi, M.K., Shiho Nakao, Tomonori Ayukawa, Toshiro Aigaki, Katsuhisa Noda, Eiji Miyoshi, Naoyuki Taniguchi, & K.M., submitted). Therefore, future studies are required to determine where N accumulates in O-fut1 cells. The second step of N transportation, the re-localization of N from the apical region of the plasma membrane to SAC/AJs, was found to require transcytosis. In one of the rare other examples of this, it was reported that GPI-anchored proteins are delivered from the basolateral surface to the apical surface by transcytosis (Polishchuk et al. 2004). Our results suggest that the absence of O- fucosylation on N does not influence N s exocytosis to the plasma membrane but disrupts its transcytosis. If this is the case, one might expect N to accumulate at the apical plasma membrane in Gmd or O-fut1 cells. However, we did not observe such an accumulation of N in these cells: N was incorporated normally by endocytosis in Gmd cells (T.S., I.H.O., N.S., Syunsuke Higashi, M.K., Shiho Nakao, Tomonori Ayukawa, Toshiro Aigaki, Katsuhisa Noda, Eiji Miyoshi, Naoyuki Taniguchi, & K.M, submitted). Thus, N is probably removed from the apical membrane and degraded by the endocytic pathway, so that the amount of N at the cell surface is maintained at the normal level in these cells. Because mutant N proteins lacking the EGF repeats failed to localize to SAC/AJs (our unpublished data), O-fucosylation of some of the EGF repeats in the extracellular domain of N is probably required for this process. O-glycans are reported to function as apical sorting signals (Yeaman et al. 1997; Alfalah et al. 1999). Thus, it is possible that a similar mechanism occurs in the O-fucosylationdependent transcytosis of N. Apicobasally polarized localization of juxtasignaling receptors and ligands may be involved in their signal transduction We demonstrated that DEcad was required for the localization of N and its ligands to the SAC/AJs. Because the loss of DEcad results in the disruption of apical polarity (Bilder et al. 2003; Tanentzapf & Tepass 2003), the delivery of N to SAC/AJs probably depends on the apical polarity of the epithelial cells. We found that the knock down of DEcad suppressed both N and Fat signaling. Fat, a transmembrane receptor, and its transmembrane ligands are also localized to the apical portion of the wing disc epithelium (Ma et al. 2003). Thus, we speculate that the apicobasally polarized localization of juxtasignaling receptors and/or ligands is a general mechanism required for the activation of their signaling. One simple explanation for this is that receptors and their ligands must confront one another between adjacent cells at the same apicobasal level to carry out their extracellular interactions The Authors Genes to Cells (2007) 12,

12 N Sasaki et al. However, it is also possible that the SAC/AJs provide a specific environment that is essential for the liganddependent activation of N. N signaling plays essential roles in various types of cells, including epithelial, mesenchymal (Saga & Takeda 2001), and neuronal cells (Artavanis-Tsakonas et al. 1999). The N localization to the SAC/AJs is probably a specific requirement for N signaling in epithelial cells. We speculate that the first step is generally required for cell types. The second transportation step may be different for different cell types, assuring that ligand receptor interactions occur at a cell-type-specific subcellular location. In vertebrates, the hallmark structures of apicobasal polarity are different from those of invertebrates (Müller 2000; Knust & Bossinger 2002). However, the structure and components of the SAC and AJs are conserved between vertebrates and invertebrates (Knust & Bossinger 2002). Therefore, it is possible that the apico-basally polarized localization of N is also required for vertebrate N signaling, which may introduce a novel prospect for studying its regulation. Experimental procedures Fly strains and RNAi Flies were cultured on standard food at 25 C or 18 C, as indicated in the figure legends. We used Canton-S as the wild-type strain, O-fut1 4R6 as the O-fut1 mutant, Notch 54l9 or Notch 55e11 as the Notch mutant, and Dl Rev10 Ser RX106 as the double mutant of Dl and Ser. Gmd H78, a mutant of Gmd, was generated by imprecise excision of a P-element from Gmd GS13045 (Toba et al. 1999). Gmd H78 lacks most of the Gmd-coding exons ( 0.8 kb) located 3 of the P-element. DEcad RNA interference (RNAi) lines carry a puast-r57 vector containing an insertion of an inverted repeat (IR) of DEcad cdna (nucleotides of the coding sequence (Pili-Floury et al. 2004). We used the following UAS lines: UASshotgun (shg) IR for DEcad RNAi, UAS-DEFL for DEcad overexpression (UAS-shg) (Oda & Tsukita 1999), and UAS-DIAP1 for blocking apoptosis (Kuranaga et al. 2002). These UAS constructs were driven by MS1096-Gal4 and/or patched (ptc)-gal4 drivers in the wing discs of third-instar larvae (Flybase: flybase.bio.indiana.edu/). hsp70-n + -GV3 was described previously (Struhl & Adachi 1998). Generation of mutant mosaics and time-course analysis involving nascent N Somatic mosaics were generated using the FLP/FRT system by a 60-min HS at 37 C in second-instar larvae (Xu & Rubin 1993). To make a mutant clone of O-fut1 4R6 in wing discs expressing nascent N, w; FRT G13 Ubi-GFP; N + -GV3/TM6B virgin females were crossed with y w hs-flp/y; FRT G13 O-fut1 4R6 /CyO. The N + -GV3 was expressed by a 15-min HS at 37 C in late third-instar larvae. Detection of cell-surface N in living epithelial cells To detect cell-surface N, dissected wing discs were incubated in rat1, an antibody against the extracellular domain of N, diluted 1/ 100 in M3 medium (SIGMA), at 4 C for 2 h. The discs were rinsed 4 times with M3 and once with PBS at 4 C, then fixed and stained as described above. Blocking of endocytosis by shi TS1 and dominant-negative Rab5 shi TS1 were cultured at 18 C, and third-instar larvae were collected and raised at the non-permissive temperature (32 C) in a water bath for the times indicated in the figure legends. To inhibit the activity of Rab5 in a temperature-sensitive manner, a dominantnegative form of Rab5 (Rab5DN) was expressed from UAS-Rab5 N142I under the control of ptc-gal4 and a temperature-sensitive Gal80 (Gal80 ts ), a suppressor of Gal4, using the TARGET method (Shimizu et al. 2003; McGuire et al. 2004). This allowed Rab5DN expression at 32 C but not 18 C. Image scanning and processing Immunostained wing discs were analyzed by acquiring serial optical sections on a Carl Zeiss LSM 510 META and LSM 5 PASCAL confocal microscope. The images shown in Figs 1 6, S1, S2, and S3 were deconvoluted using AutoDeblur software (AutoQuant). The images shown in Fig. 7 were combined by maximum projection using LSM 5 Image Examiner software from Zeiss. Immunohistochemistry Wing imaginal discs dissected from third-instar larvae were stained as described previously (Matsuno et al. 2002). The following antibodies were used: mouse anti-n [C17.9C6 Developmental Studies Hybridoma Bank (DSHB)], 1:100; rat anti-n (rat1 provided by S. Artavanis-Tsakonas), 1:1000; mouse anti-dl (C594.9B DSHB), 1:100; guinea pig anti-dl (GP581 provided by M. A. Muskavitch), 1:3000; rat anti-ser (provided by K.D. Irvine), 1:1000; rabbit anti-npkcξ polyclonal (C20 Santa Cruz Biotechnology), 1:200; rat anti-decad (DCAD2 DSHB), 1:200; mouse anti-arm (N2 7A1 DSHB), 1:10; mouse anti-dlg (4F3 DSHB), 1:10; guinea pig anti-cora (provided by R.G. Fehon), 1:2500; mouse anti-gal4 (DBD) (RK5C1 Santa Cruz Biotechnology), 1:100; mouse anti-wg (4D4 DSHB), 1:100; mouse anti-cut (2B10, DSHB), 1:100; rabbit anti-cleaved Caspase-3 (Asp175) (Cell Signaling), 1:200; rabbit anti-gfp (MBL), 1:1000; rabbit anti-phospho-histone H3 (Upstate), 1:500; rabbit anti-cis Golgi (GM130 provided by S. Goto), 1:400; Guinea Pig anti-hrs (provided by H.J. Bellen), 1:400; and rat anti-rab11 (provided by R.S. Cohen) 1:400. For detection, FITC- (Jackson Laboratories), Alexa 488- (Molecular Probes), Cy3- (Jackson Laboratories), and Cy5- (Rockland) conjugated secondary antibodies were used at 1:200. F-actin labeling was performed after immunostaining using rhodamine phalloidin (Molecular Probes) at a 1:10 dilution for 1 h at room temperature. 100 Genes to Cells (2007) 12, The Authors

13 Notch epithelial signal needs apical location Immunoprecipitations and immunoblotting The immunoprecipitation procedure was described previously (Kitagawa et al. 2001). The primary antibodies used for blotting were anti- npkcξ polyclonal (C10), anti-decad (DCAD2), anti- Dlg (4F3), anti-notch (9C6), anti-delta (9B), and anti-beta tubulin (E7). In some cases, the membranes were stripped in 2% SDS, 100 nm 2-Mercaptoethanol, and 62.5 nm Tris HCl (ph 6.8) buffer, and reprobed. Acknowledgements We thank G. Struhl, H. Oda, S. Artavanis-Tsakonas, and N. E. Baker for fly stocks, and S. Artavanis-Tsakonas, K. D. Irvine, M. A. Muskavitch, E. Knust, and R. G. Fehon for antibodies. We also thank the Developmental Studies Hybridoma Bank (University of Iowa) for antibodies, and the Bloomington Drosophila Stock Center (Indiana) and the Drosophila Genetic Resource Center, Kyoto Institute of Technology (Kyoto) for fly stocks. We thank Y. Shimada and the members of the Matsuno laboratory for valuable discussions. This work was supported by Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency (PRESTO, JST). References Alfalah, M., Jacob, R., Preuss, U., Zimmer, K.P., Naim, H. & Naim, H.Y. (1999) O-linked glycans mediate apical sorting of human intestinal sucrase isomaltase through association with lipid rafts. Curr. Biol. 9, Artavanis-Tsakonas, S., Rand, M. D. & Lake, R.J. (1999) Notch signaling: cell fate control and signal integration in development. Science 284, Bender, L.B., Kooh, P.J. & Muskavitch, M.A.T. (1993) Complex function and expression of Delta during Drosophila oogenesis. Genetics 133, Bilder, D., Schober, M. & Perrimon, N. (2003) Integrated activity of PDZ protein complexes regulates epithelial polarity. Nat. Cell Biol. 5, van der Bliek, A.M. & Meyerowitz, E.M. (1991) Dynamin-like protein encoded by the Drosophila shibire gene associated with vesicular traffic. Nature 351, Bobinnec, Y., Marcaillou, C., Morin, X. & Debec, A. (2003) Dynamics of the endoplasmic reticulum during early development of Drosophila melanogaster. Cell Motil. Cytoskeleton 54, Brou, C., Logeat, F., Gupta, N., Bessia, C., LeBail, O., Doedens, J.R., Cumano, A., Roux, P., Black, R.A. & Israel, A. (2000) A novel proteolytic cleavage involved in Notch signaling: the role of the disintegrin-metalloprotease TACE. Mol. Cell 5, Bucci, C., Parton, R.G., Mather, I.H., Stunnenberg, H., Simons, K., Hoflack, B. & Zerial, M. (1992) The small GTPase rab5 functions as a regulatory factor in the early endocytic pathway. Cell 70, Cho, E. & Irvine, K.D. (2004) Action of fat, four-jointed, dachsous and dachs in distal-to-proximal wing signaling. Development 131, Clark, H.F., Brentrup, D., Schneitz, K., Bieber, A., Goodman, C. & Noll, M. (1995) Dachsous encodes a member of the cadherin superfamily that controls imaginal disc morphogenesis in Drosophila. Genes Dev. 9, Dollar, G., Struckhoff, E., Michaud, J. & Cohen, R.S. (2002) Rab11 polarization of the Drosophila oocyte: a novel link between membrane trafficking, microtubule organization, and osker mrna localization and translation. Development 129, Fehon, R.G., Kooh, P.J., Rebay, I., Regan, C.L., Xu, T., Muskavitch, M.A. & Artavanis-Tsakonas, S. (1990) Molecular interactions between the protein products of the neurogenic loci Notch and Delta, two EGF-homologous genes in Drosophila. Cell 61, Fehon, R.G., Johansen, K., Rebay, I. & Artavanis-Tsakonas, S. (1991) Complex cellular and subcellular regulation of Notch expression during embryonic and imaginal development of Drosophila: implications for Notch function. J. Cell Biol. 113, Galli, T., Zahraoui, A., Vaidyanathan, V.V., Raposo, G., Tian, J.M., Karin, M., Niemann, H. & Louvard, D. (1998) A novel tetanus neurotoxin-insensitive vesicle-associated membrane protein in SNARE complexes of the apical plasma membrane of epithelial cells. Mol. Biol. Cell 9, Grigliatti, T.A., Hall, L., Rosenbluth, R., Suzuki, D.T. (1973) Temperature-sensitive mutations in Drosophila melanogaster. Mol. Gen. Genet. 120, Kitagawa, M., Oyama, T., Kawashima, T., Yedvobnick, B., Kumar, A., Matsuno, K., Harigaya, K. (2001) A human protein with sequence similarity to Drosophila mastermind coordinates the nuclear form of notch and a CSL protein to build a transcriptional activator complex on target promoters. Mol. Cell. Biol. 13, Knust, E. & Bossinger, O. (2002) Composition and formation of intercellular junctions in epithelial cells. Science 298, Kooh, P.J., Fehon, R.G. & Muskavitch, M.A.T. (1993) Implication of dynamic patterns of Delta and Notch expression for cellular interactions during Drosophila development. Development 117, Kuranaga, E., Kanuka, H., Igaki, T., Sawamoto, K., Ichijo, H., Okano, H. & Miura, M. (2002) Reaper-mediated inhibition of DIAP1-induced DTRAF1 degradation results in activation of JNK in Drosophila. Nat. Cell Biol. 4, Lamb, R.S., Ward, R.E., Schweizer, L. & Fehon, R.G. (1998) Drosophila coracle, a member of the protein 4.1 superfamily, has essential structural functions in the septate junctions and developmental functions in embryonic and adult epithelial cells. Mol. Biol. Cell 9, Le Borgne, R., Bardin, A. & Schweisguth, F. (2005) The roles of receptor and ligand endocytosis in regulating Notch signaling. Development 132, Lei, L., Xu, A., Panin, V.M. & Irvine, K.D. (2003) An O-fucose site in the ligand binding domain inhibits Notch activation. Development 130, The Authors Genes to Cells (2007) 12,

13-3. Synthesis-Secretory pathway: Sort lumenal proteins, Secrete proteins, Sort membrane proteins

13-3. Synthesis-Secretory pathway: Sort lumenal proteins, Secrete proteins, Sort membrane proteins 13-3. Synthesis-Secretory pathway: Sort lumenal proteins, Secrete proteins, Sort membrane proteins Molecular sorting: specific budding, vesicular transport, fusion 1. Why is this important? A. Form and

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 10.1038/ncb3267 Supplementary Figure 1 A group of genes required for formation or orientation of annular F-actin bundles and aecm ridges: RNAi phenotypes and their validation by standard mutations.

More information

Supplementary Materials for

Supplementary Materials for www.sciencesignaling.org/cgi/content/full/6/301/ra98/dc1 Supplementary Materials for Regulation of Epithelial Morphogenesis by the G Protein Coupled Receptor Mist and Its Ligand Fog Alyssa J. Manning,

More information

Cell Biology Review. The key components of cells that concern us are as follows: 1. Nucleus

Cell Biology Review. The key components of cells that concern us are as follows: 1. Nucleus Cell Biology Review Development involves the collective behavior and activities of cells, working together in a coordinated manner to construct an organism. As such, the regulation of development is intimately

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION GP2 Type I-piliated bacteria FAE M cell M cell pocket idc T cell mdc Generation of antigenspecific T cells Induction of antigen-specific mucosal immune response Supplementary Figure 1 Schematic diagram

More information

Chapter 4 Evaluating a potential interaction between deltex and git in Drosophila: genetic interaction, gene overexpression and cell biology assays.

Chapter 4 Evaluating a potential interaction between deltex and git in Drosophila: genetic interaction, gene overexpression and cell biology assays. Evaluating a potential interaction between deltex and git in Drosophila: genetic interaction, gene overexpression and cell biology assays. The data described in chapter 3 presented evidence that endogenous

More information

Nature Neuroscience: doi: /nn.2662

Nature Neuroscience: doi: /nn.2662 Supplementary Figure 1 Atlastin phylogeny and homology. (a) Maximum likelihood phylogenetic tree based on 18 Atlastin-1 sequences using the program Quicktree. Numbers at internal nodes correspond to bootstrap

More information

DOI: 10.1038/ncb2819 Gαi3 / Actin / Acetylated Tubulin Gαi3 / Actin / Acetylated Tubulin a a Gαi3 a Actin Gαi3 WT Gαi3 WT Gαi3 WT b b Gαi3 b Actin Gαi3 KO Gαi3 KO Gαi3 KO # # Figure S1 Loss of protein

More information

Baz, Par-6 and apkc are not required for axon or dendrite specification in Drosophila

Baz, Par-6 and apkc are not required for axon or dendrite specification in Drosophila Baz, Par-6 and apkc are not required for axon or dendrite specification in Drosophila Melissa M. Rolls and Chris Q. Doe, Inst. Neurosci and Inst. Mol. Biol., HHMI, Univ. Oregon, Eugene, Oregon 97403 Correspondence

More information

Supplementary Information

Supplementary Information Supplementary Information Supplementary Figure 1. JAK/STAT in early wing development (a-f) Wing primordia of second instar larvae of the indicated genotypes labeled to visualize expression of upd mrna

More information

BE 159: Signal Transduction and Mechanics in Morphogenesis

BE 159: Signal Transduction and Mechanics in Morphogenesis BE 159: Signal Transduction and Mechanics in Morphogenesis Justin Bois Caltech Winter, 2018 2018 Justin Bois. This work is licensed under a Creative Commons Attribution License CC-BY 4.0. 5 Delta-Notch

More information

Developmental Biology

Developmental Biology Developmental Biology 334 (2009) 161 173 Contents lists available at ScienceDirect Developmental Biology journal homepage: www.elsevier.com/developmentalbiology Wingless signaling and the control of cell

More information

Pattern formation: Wingless on the move Robert Howes and Sarah Bray

Pattern formation: Wingless on the move Robert Howes and Sarah Bray R222 Dispatch Pattern formation: Wingless on the move Robert Howes and Sarah Bray Wingless is a key morphogen in Drosophila. Although it is evident that Wingless acts at a distance from its site of synthesis,

More information

Protein Sorting, Intracellular Trafficking, and Vesicular Transport

Protein Sorting, Intracellular Trafficking, and Vesicular Transport Protein Sorting, Intracellular Trafficking, and Vesicular Transport Noemi Polgar, Ph.D. Department of Anatomy, Biochemistry and Physiology Email: polgar@hawaii.edu Phone: 692-1422 Outline Part 1- Trafficking

More information

Regulation and signaling. Overview. Control of gene expression. Cells need to regulate the amounts of different proteins they express, depending on

Regulation and signaling. Overview. Control of gene expression. Cells need to regulate the amounts of different proteins they express, depending on Regulation and signaling Overview Cells need to regulate the amounts of different proteins they express, depending on cell development (skin vs liver cell) cell stage environmental conditions (food, temperature,

More information

The neuron as a secretory cell

The neuron as a secretory cell The neuron as a secretory cell EXOCYTOSIS ENDOCYTOSIS The secretory pathway. Transport and sorting of proteins in the secretory pathway occur as they pass through the Golgi complex before reaching the

More information

!"#$%&'%()*%+*,,%-&,./*%01%02%/*/3452*%3&.26%&4752*,,*1%%

!#$%&'%()*%+*,,%-&,./*%01%02%/*/3452*%3&.26%&4752*,,*1%% !"#$%&'%()*%+*,,%-&,./*%01%02%/*/3452*%3&.26%&4752*,,*1%% !"#$%&'(")*++*%,*'-&'./%/,*#01#%-2)#3&)/% 4'(")*++*% % %5"0)%-2)#3&) %%% %67'2#72'*%%%%%%%%%%%%%%%%%%%%%%%4'(")0/./% % 8$+&'&,+"/7 % %,$&7&/9)7$*/0/%%%%%%%%%%

More information

Cell Cell Communication in Development

Cell Cell Communication in Development Biology 4361 Developmental Biology Cell Cell Communication in Development June 25, 2008 Cell Cell Communication Concepts Cells in developing organisms develop in the context of their environment, including

More information

CHAPTER 3. Cell Structure and Genetic Control. Chapter 3 Outline

CHAPTER 3. Cell Structure and Genetic Control. Chapter 3 Outline CHAPTER 3 Cell Structure and Genetic Control Chapter 3 Outline Plasma Membrane Cytoplasm and Its Organelles Cell Nucleus and Gene Expression Protein Synthesis and Secretion DNA Synthesis and Cell Division

More information

ADAM FAMILY. ephrin A INTERAZIONE. Eph ADESIONE? PROTEOLISI ENDOCITOSI B A RISULTATO REPULSIONE. reverse. forward

ADAM FAMILY. ephrin A INTERAZIONE. Eph ADESIONE? PROTEOLISI ENDOCITOSI B A RISULTATO REPULSIONE. reverse. forward ADAM FAMILY - a family of membrane-anchored metalloproteases that are known as A Disintegrin And Metalloprotease proteins and are key components in protein ectodomain shedding Eph A INTERAZIONE B ephrin

More information

Cell-Cell Communication in Development

Cell-Cell Communication in Development Biology 4361 - Developmental Biology Cell-Cell Communication in Development October 2, 2007 Cell-Cell Communication - Topics Induction and competence Paracrine factors inducer molecules Signal transduction

More information

purpose of this Chapter is to highlight some problems that will likely provide new

purpose of this Chapter is to highlight some problems that will likely provide new 119 Chapter 6 Future Directions Besides our contributions discussed in previous chapters to the problem of developmental pattern formation, this work has also brought new questions that remain unanswered.

More information

Development of Drosophila

Development of Drosophila Development of Drosophila Hand-out CBT Chapter 2 Wolpert, 5 th edition March 2018 Introduction 6. Introduction Drosophila melanogaster, the fruit fly, is found in all warm countries. In cooler regions,

More information

Supporting Information

Supporting Information Supporting Information Cao et al. 10.1073/pnas.1306220110 Gram - bacteria Hemolymph Cytoplasm PGRP-LC TAK1 signalosome Imd dfadd Dredd Dnr1 Ikk signalosome P Relish Nucleus AMP and effector genes Fig.

More information

Lecture 7. Development of the Fruit Fly Drosophila

Lecture 7. Development of the Fruit Fly Drosophila BIOLOGY 205/SECTION 7 DEVELOPMENT- LILJEGREN Lecture 7 Development of the Fruit Fly Drosophila 1. The fruit fly- a highly successful, specialized organism a. Quick life cycle includes three larval stages

More information

Ligand endocytosis drives receptor dissociation and activation in the Notch pathway

Ligand endocytosis drives receptor dissociation and activation in the Notch pathway Development 127, 1373-1385 (2000) Printed in Great Britain The Company of Biologists Limited 2000 DEV8689 1373 Ligand endocytosis drives receptor dissociation and activation in the Notch pathway Annette

More information

5- Semaphorin-Plexin-Neuropilin

5- Semaphorin-Plexin-Neuropilin 5- Semaphorin-Plexin-Neuropilin 1 SEMAPHORINS-PLEXINS-NEUROPILINS ligands receptors co-receptors semaphorins and their receptors are known signals for: -axon guidance -cell migration -morphogenesis -immune

More information

Segment boundary formation in Drosophila embryos

Segment boundary formation in Drosophila embryos Segment boundary formation in Drosophila embryos Development 130, August 2003 Camilla W. Larsen, Elizabeth Hirst, Cyrille Alexandre and Jean Paul Vincent 1. Introduction: - Segment boundary formation:

More information

Endocytosis of Hedgehog through Dispatched Regulates Long-Range Signaling

Endocytosis of Hedgehog through Dispatched Regulates Long-Range Signaling Article Endocytosis of Hedgehog through Dispatched Regulates Long-Range Signaling Graphical Abstract Authors Gisela D Angelo, Tamás Matusek, Sandrine Pizette, Pascal P. Thérond Correspondence dangelo@unice.fr

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 10.1038/ncb2647 Figure S1 Other Rab GTPases do not co-localize with the ER. a, Cos-7 cells cotransfected with an ER luminal marker (either KDEL-venus or mch-kdel) and mch-tagged human Rab5 (mch-rab5,

More information

THE PENNSYLVANIA STATE UNIVERSITY SCHREYER HONORS COLLEGE DEPARTMENT OF BIOCHEMISTRY AND MOLECULAR BIOLOGY ACTIVITY STEPHANIE E. CRILLY SPRING 2015

THE PENNSYLVANIA STATE UNIVERSITY SCHREYER HONORS COLLEGE DEPARTMENT OF BIOCHEMISTRY AND MOLECULAR BIOLOGY ACTIVITY STEPHANIE E. CRILLY SPRING 2015 THE PENNSYLVANIA STATE UNIVERSITY SCHREYER HONORS COLLEGE DEPARTMENT OF BIOCHEMISTRY AND MOLECULAR BIOLOGY INVESTIGATING THE ROLE OF βheavy-spectrin IN MODULATION OF RAC1 ACTIVITY STEPHANIE E. CRILLY SPRING

More information

Separating the adhesive and signaling functions of the Fat and Dachsous protocadherins

Separating the adhesive and signaling functions of the Fat and Dachsous protocadherins RESEARCH ARTICLE 2315 Development 133, 2315-2324 (2006) doi:10.1242/dev.02401 Separating the adhesive and signaling functions of the Fat and Dachsous protocadherins Hitoshi Matakatsu and Seth S. Blair*

More information

Bio 127 Section I Introduction to Developmental Biology. Cell Cell Communication in Development. Developmental Activities Coordinated in this Way

Bio 127 Section I Introduction to Developmental Biology. Cell Cell Communication in Development. Developmental Activities Coordinated in this Way Bio 127 Section I Introduction to Developmental Biology Cell Cell Communication in Development Gilbert 9e Chapter 3 It has to be EXTREMELY well coordinated for the single celled fertilized ovum to develop

More information

Role of Mitochondrial Remodeling in Programmed Cell Death in

Role of Mitochondrial Remodeling in Programmed Cell Death in Developmental Cell, Vol. 12 Supplementary Data Role of Mitochondrial Remodeling in Programmed Cell Death in Drosophila melanogaster Gaurav Goyal, Brennan Fell, Apurva Sarin, Richard J. Youle, V. Sriram.

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION med!1,2 Wild-type (N2) end!3 elt!2 5 1 15 Time (minutes) 5 1 15 Time (minutes) med!1,2 end!3 5 1 15 Time (minutes) elt!2 5 1 15 Time (minutes) Supplementary Figure 1: Number of med-1,2, end-3, end-1 and

More information

Drosophila wing. Temporal regulation of Apterous activity during development of the. Marco Milán and Stephen M. Cohen* SUMMARY

Drosophila wing. Temporal regulation of Apterous activity during development of the. Marco Milán and Stephen M. Cohen* SUMMARY Development 127, 3069-3078 (2000) Printed in Great Britain The Company of Biologists Limited 2000 DEV2547 3069 Temporal regulation of Apterous activity during development of the Drosophila wing Marco Milán

More information

Signal Transduction. Dr. Chaidir, Apt

Signal Transduction. Dr. Chaidir, Apt Signal Transduction Dr. Chaidir, Apt Background Complex unicellular organisms existed on Earth for approximately 2.5 billion years before the first multicellular organisms appeared.this long period for

More information

Axis Specification in Drosophila

Axis Specification in Drosophila Developmental Biology Biology 4361 Axis Specification in Drosophila November 2, 2006 Axis Specification in Drosophila Fertilization Superficial cleavage Gastrulation Drosophila body plan Oocyte formation

More information

Chapter 11. Development: Differentiation and Determination

Chapter 11. Development: Differentiation and Determination KAP Biology Dept Kenyon College Differential gene expression and development Mechanisms of cellular determination Induction Pattern formation Chapter 11. Development: Differentiation and Determination

More information

S1 Gene ontology (GO) analysis of the network alignment results

S1 Gene ontology (GO) analysis of the network alignment results 1 Supplementary Material for Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model Hyundoo Jeong 1, Xiaoning Qian 1 and

More information

Genetic characterization of the Drosophila homologue of coronin

Genetic characterization of the Drosophila homologue of coronin Research Article 1911 Genetic characterization of the Drosophila homologue of coronin V. Bharathi, S. K. Pallavi, R. Bajpai, B. S. Emerald and L. S. Shashidhara* Centre for Cellular and Molecular Biology,

More information

Drosophila IAP1-mediated ubiquitylation controls activation of the initiator caspase DRONC independent of protein degradation

Drosophila IAP1-mediated ubiquitylation controls activation of the initiator caspase DRONC independent of protein degradation University of Massachusetts Medical School escholarship@umms Molecular, Cell and Cancer Biology Publications Molecular, Cell and Cancer Biology 9-1-2011 Drosophila IAP1-mediated ubiquitylation controls

More information

Different cell types exhibit different degrees of complexity in

Different cell types exhibit different degrees of complexity in Distinct roles of Bazooka and Stardust in the specification of Drosophila photoreceptor membrane architecture Yang Hong, Larry Ackerman, Lily Yeh Jan, and Yuh-Nung Jan* Howard Hughes Medical Institute

More information

Sang-Chul Nam a,1, Bibhash Mukhopadhyay b, Kwang-Wook Choi a,b,c,

Sang-Chul Nam a,1, Bibhash Mukhopadhyay b, Kwang-Wook Choi a,b,c, Developmental Biology 306 (2007) 624 635 www.elsevier.com/locate/ydbio Antagonistic functions of Par-1 kinase and protein phosphatase 2A are required for localization of Bazooka and photoreceptor morphogenesis

More information

Cell-Cell Communication in Development

Cell-Cell Communication in Development Biology 4361 - Developmental Biology Cell-Cell Communication in Development June 23, 2009 Concepts Cell-Cell Communication Cells develop in the context of their environment, including: - their immediate

More information

DISCOVERIES OF MACHINERY REGULATING VESICLE TRAFFIC, A MAJOR TRANSPORT SYSTEM IN OUR CELLS. Scientific Background on the Nobel Prize in Medicine 2013

DISCOVERIES OF MACHINERY REGULATING VESICLE TRAFFIC, A MAJOR TRANSPORT SYSTEM IN OUR CELLS. Scientific Background on the Nobel Prize in Medicine 2013 DISCOVERIES OF MACHINERY REGULATING VESICLE TRAFFIC, A MAJOR TRANSPORT SYSTEM IN OUR CELLS Scientific Background on the Nobel Prize in Medicine 2013 Daniela Scalet 6/12/2013 The Nobel Prize in Medicine

More information

Exam 2 ID#: November 9, 2006

Exam 2 ID#: November 9, 2006 Biology 4361 Name: KEY Exam 2 ID#: November 9, 2006 Multiple choice (one point each) Circle the best answer. 1. Inducers of Xenopus lens and optic vesicle include a. pharyngeal endoderm and anterior neural

More information

downstream (0.8 kb) homologous sequences to the genomic locus of DIC. A DIC mutant strain (ro- 6

downstream (0.8 kb) homologous sequences to the genomic locus of DIC. A DIC mutant strain (ro- 6 A B C D ts Figure S1 Generation of DIC- mcherry expressing N.crassa strain. A. N. crassa colony morphology. When a cot1 (top, left panel) strain is grown at permissive temperature (25 C), it exhibits straight

More information

Supplementary Materials for

Supplementary Materials for www.sciencemag.org/cgi/content/full/science.1244624/dc1 Supplementary Materials for Cytoneme-Mediated Contact-Dependent Transport of the Drosophila Decapentaplegic Signaling Protein Sougata Roy, Hai Huang,

More information

Pak1 control of E-cadherin endocytosis regulates salivary gland lumen size and shape

Pak1 control of E-cadherin endocytosis regulates salivary gland lumen size and shape RESEARCH ARTICLE 4177 Development 137, 4177-4189 (2010) doi:10.1242/dev.048827 2010. Published by The Company of Biologists Ltd Pak1 control of E-cadherin endocytosis regulates salivary gland lumen size

More information

Axis Specification in Drosophila

Axis Specification in Drosophila Developmental Biology Biology 4361 Axis Specification in Drosophila November 6, 2007 Axis Specification in Drosophila Fertilization Superficial cleavage Gastrulation Drosophila body plan Oocyte formation

More information

Supplementary Figure 1. Real time in vivo imaging of SG secretion. (a) SGs from Drosophila third instar larvae that express Sgs3-GFP (green) and

Supplementary Figure 1. Real time in vivo imaging of SG secretion. (a) SGs from Drosophila third instar larvae that express Sgs3-GFP (green) and Supplementary Figure 1. Real time in vivo imaging of SG secretion. (a) SGs from Drosophila third instar larvae that express Sgs3-GFP (green) and Lifeact-Ruby (red) were imaged in vivo to visualize secretion

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature10923 Supplementary Figure 1 Ten-a and Ten-m antibody and cell type specificities. a c, Representative single confocal sections of a Drosophila NMJ stained with antibodies to Ten-a (red),

More information

Epithelial Polarity. Gerard Apodaca Luciana I. Gallo. Colloquium series on Building BloCks of the Cell: Cell structure and function

Epithelial Polarity. Gerard Apodaca Luciana I. Gallo. Colloquium series on Building BloCks of the Cell: Cell structure and function Colloquium series on Building BloCks of the Cell: Cell structure and function Series Editor: Ivan Robert Nabi Epithelial Polarity Gerard Apodaca Luciana I. Gallo life sciences Morgan & Claypool life SCIEnCES

More information

Richik N. Ghosh, Linnette Grove, and Oleg Lapets ASSAY and Drug Development Technologies 2004, 2:

Richik N. Ghosh, Linnette Grove, and Oleg Lapets ASSAY and Drug Development Technologies 2004, 2: 1 3/1/2005 A Quantitative Cell-Based High-Content Screening Assay for the Epidermal Growth Factor Receptor-Specific Activation of Mitogen-Activated Protein Kinase Richik N. Ghosh, Linnette Grove, and Oleg

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI: 10.1038/ncb2362 Figure S1 CYLD and CASPASE 8 genes are co-regulated. Analysis of gene expression across 79 tissues was carried out as described previously [Ref: PMID: 18636086]. Briefly, microarray

More information

Boundary Formation by Notch Signaling in Drosophila Multicellular Systems: Experimental Observations and Gene Network Modeling by Genomic Object Net

Boundary Formation by Notch Signaling in Drosophila Multicellular Systems: Experimental Observations and Gene Network Modeling by Genomic Object Net Boundary Formation by Notch Signaling in Drosophila Multicellular Systems: Experimental Observations and Gene Network Modeling by Genomic Object Net H. Matsuno, R. Murakani, R. Yamane, N. Yamasaki, S.

More information

7.06 Cell Biology EXAM #3 April 21, 2005

7.06 Cell Biology EXAM #3 April 21, 2005 7.06 Cell Biology EXAM #3 April 21, 2005 This is an open book exam, and you are allowed access to books, a calculator, and notes but not computers or any other types of electronic devices. Please write

More information

Supplemental Information. The Mitochondrial Fission Receptor MiD51. Requires ADP as a Cofactor

Supplemental Information. The Mitochondrial Fission Receptor MiD51. Requires ADP as a Cofactor Structure, Volume 22 Supplemental Information The Mitochondrial Fission Receptor MiD51 Requires ADP as a Cofactor Oliver C. Losón, Raymond Liu, Michael E. Rome, Shuxia Meng, Jens T. Kaiser, Shu-ou Shan,

More information

Conclusions. The experimental studies presented in this thesis provide the first molecular insights

Conclusions. The experimental studies presented in this thesis provide the first molecular insights C h a p t e r 5 Conclusions 5.1 Summary The experimental studies presented in this thesis provide the first molecular insights into the cellular processes of assembly, and aggregation of neural crest and

More information

Drosophila Exocyst Components Sec5, Sec6, and Sec15 Regulate DE-Cadherin Trafficking from Recycling Endosomes to the Plasma Membrane

Drosophila Exocyst Components Sec5, Sec6, and Sec15 Regulate DE-Cadherin Trafficking from Recycling Endosomes to the Plasma Membrane Developmental Cell, Vol. 9, 365 376, September, 2005, Copyright 2005 by Elsevier Inc. DOI 10.1016/j.devcel.2005.07.013 Drosophila Exocyst Components Sec5, Sec6, and Sec15 Regulate DE-Cadherin Trafficking

More information

Developmental, Cellular, and Molecular Biology Group, Duke University, Durham, North Carolina

Developmental, Cellular, and Molecular Biology Group, Duke University, Durham, North Carolina Molecular Biology of the Cell Vol. 9, 3505 3519, December 1998 Drosophila coracle, a Member of the Protein 4.1 Superfamily, Has Essential Structural Functions in the Septate Junctions and Developmental

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Supplementary Notes Downregulation of atlastin does not affect secretory traffic We investigated whether Atlastin might play a role in secretory traffic. Traffic impairment results in disruption of Golgi

More information

7.06 Spring 2004 PS 6 KEY 1 of 14

7.06 Spring 2004 PS 6 KEY 1 of 14 7.06 Spring 2004 PS 6 KEY 1 of 14 Problem Set 6. Question 1. You are working in a lab that studies hormones and hormone receptors. You are tasked with the job of characterizing a potentially new hormone

More information

Chapter 18 Lecture. Concepts of Genetics. Tenth Edition. Developmental Genetics

Chapter 18 Lecture. Concepts of Genetics. Tenth Edition. Developmental Genetics Chapter 18 Lecture Concepts of Genetics Tenth Edition Developmental Genetics Chapter Contents 18.1 Differentiated States Develop from Coordinated Programs of Gene Expression 18.2 Evolutionary Conservation

More information

Illegitimate translation causes unexpected gene expression from on-target out-of-frame alleles

Illegitimate translation causes unexpected gene expression from on-target out-of-frame alleles Illegitimate translation causes unexpected gene expression from on-target out-of-frame alleles created by CRISPR-Cas9 Shigeru Makino, Ryutaro Fukumura, Yoichi Gondo* Mutagenesis and Genomics Team, RIKEN

More information

CELB40060 Membrane Trafficking in Animal Cells. Prof. Jeremy C. Simpson. Lecture 2 COPII and export from the ER

CELB40060 Membrane Trafficking in Animal Cells. Prof. Jeremy C. Simpson. Lecture 2 COPII and export from the ER CELB40060 Membrane Trafficking in Animal Cells Prof. Jeremy C. Simpson Lecture 2 COPII and export from the ER Today s lecture... The COPII coat - localisation and subunits Formation of the COPII coat at

More information

Supplementary Figures

Supplementary Figures Supplementary Figures Supplementary Fig. S1: Normal development and organization of the embryonic ventral nerve cord in Platynereis. (A) Life cycle of Platynereis dumerilii. (B-F) Axonal scaffolds and

More information

Exam 4 ID#: July 7, 2008

Exam 4 ID#: July 7, 2008 Biology 4361 Name: KEY Exam 4 ID#: July 7, 2008 Multiple choice (one point each; indicate the best answer) 1. RNA polymerase II is not able to transcribe RNA unless a. it is first bound to TFIIB. b. its

More information

Examination paper for Bi3016 Molecular Cell Biology

Examination paper for Bi3016 Molecular Cell Biology Department of Biology Examination paper for Bi3016 Molecular Cell Biology Academic contact during examination: Per Winge Phone: 99369359 Examination date: 20 th December 2017 Examination time (from-to):

More information

Supplementary Figure 1. AnnexinV FITC and Sytox orange staining in wild type, Nlrp3 /, ASC / and casp1/11 / TEC treated with TNF /CHX.

Supplementary Figure 1. AnnexinV FITC and Sytox orange staining in wild type, Nlrp3 /, ASC / and casp1/11 / TEC treated with TNF /CHX. Supplementary Figure 1. AnnexinV FITC and Sytox orange staining in wild type, Nlrp3 /, ASC / and casp1/11 / TEC treated with TNF /CHX. Phase contrast and widefield fluorescence microscopy (20x magnification).

More information

Chapter 12: Intracellular sorting

Chapter 12: Intracellular sorting Chapter 12: Intracellular sorting Principles of intracellular sorting Principles of intracellular sorting Cells have many distinct compartments (What are they? What do they do?) Specific mechanisms are

More information

Cells to Tissues. Peter Takizawa Department of Cell Biology

Cells to Tissues. Peter Takizawa Department of Cell Biology Cells to Tissues Peter Takizawa Department of Cell Biology From one cell to ensembles of cells. Multicellular organisms require individual cells to work together in functional groups. This means cells

More information

Constitutively active Protein kinase D acts as negative regulator of the Slingshot-phosphatase in Drosophila

Constitutively active Protein kinase D acts as negative regulator of the Slingshot-phosphatase in Drosophila Hereditas 147: 237 242 (2010) Constitutively active Protein kinase D acts as negative regulator of the Slingshot-phosphatase in Drosophila ANJA C. NAGEL, JENS SCHMID, JASMIN S. AUER, ANETTE PREISS and

More information

Fig. S1. Proliferation and cell cycle exit are affected by the med mutation. (A,B) M-phase nuclei are visualized by a-ph3 labeling in wild-type (A)

Fig. S1. Proliferation and cell cycle exit are affected by the med mutation. (A,B) M-phase nuclei are visualized by a-ph3 labeling in wild-type (A) Fig. S1. Proliferation and cell cycle exit are affected by the med mutation. (A,B) M-phase nuclei are visualized by a-ph3 labeling in wild-type (A) and mutant (B) 4 dpf retinae. The central retina of the

More information

7.06 Problem Set

7.06 Problem Set 7.06 Problem Set 5 -- 2006 1. In the first half of the course, we encountered many examples of proteins that entered the nucleus in response to the activation of a cell-signaling pathway. One example of

More information

7.013 Problem Set

7.013 Problem Set 7.013 Problem Set 5-2013 Question 1 During a summer hike you suddenly spot a huge grizzly bear. This emergency situation triggers a fight or flight response through a signaling pathway as shown below.

More information

A large complex containing Patched and Smoothened initiates Hedgehog signaling in Drosophila

A large complex containing Patched and Smoothened initiates Hedgehog signaling in Drosophila 826 Research Article A large complex containing Patched and Smoothened initiates Hedgehog signaling in Drosophila Sabrina L. Walthall 1, Michelle Moses 1 and Jamila I. Horabin 2, * 1 Department of Biochemistry

More information

Selective Targeting of ER Exit Sites Supports Axon Development

Selective Targeting of ER Exit Sites Supports Axon Development Traffic 2009; 10: 1669 1684 2009 John Wiley & Sons A/S doi:10.1111/j.1600-0854.2009.00974.x Selective Targeting of ER Exit Sites Supports Axon Development Meir Aridor 1 and Kenneth N. Fish 2, 1 Department

More information

Morphogen gradient interpretation by a regulated trafficking step during ligand receptor transduction

Morphogen gradient interpretation by a regulated trafficking step during ligand receptor transduction Morphogen gradient interpretation by a regulated trafficking step during ligand receptor transduction Jerome Jullien and John Gurdon 1 Wellcome Trust/Cancer Research UK Gurdon Institute, University of

More information

Supplementary Information 16

Supplementary Information 16 Supplementary Information 16 Cellular Component % of Genes 50 45 40 35 30 25 20 15 10 5 0 human mouse extracellular other membranes plasma membrane cytosol cytoskeleton mitochondrion ER/Golgi translational

More information

Understanding the Role of the Actin Cytoskeleton in Vesicle Trafficking to Restrict Growth of Drosophila Epithelia

Understanding the Role of the Actin Cytoskeleton in Vesicle Trafficking to Restrict Growth of Drosophila Epithelia Understanding the Role of the Actin Cytoskeleton in Vesicle Trafficking to Restrict Growth of Drosophila Epithelia I. Introduction The ability of eukaryotic cells to assume a variety of shapes and to carry

More information

Importance of Protein sorting. A clue from plastid development

Importance of Protein sorting. A clue from plastid development Importance of Protein sorting Cell organization depend on sorting proteins to their right destination. Cell functions depend on sorting proteins to their right destination. Examples: A. Energy production

More information

THE CELL 3/15/15 HUMAN ANATOMY AND PHYSIOLOGY I THE CELLULAR BASIS OF LIFE

THE CELL 3/15/15 HUMAN ANATOMY AND PHYSIOLOGY I THE CELLULAR BASIS OF LIFE HUMAN ANATOMY AND PHYSIOLOGY I Lecture: M 6-9:30 Randall Visitor Center Lab: W 6-9:30 Swatek Anatomy Center, Centennial Complex Required Text: Marieb 9 th edition Dr. Trevor Lohman DPT (949) 246-5357 tlohman@llu.edu

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Supplementary Figure 1 Sns and Duf co-localise in embryonic nephrocytes a-c, Wild-type stage 11 (a),14 (b) and 16 (c) embryos stained with anti-duf (green) and anti-sns (red). Higher magnification images

More information

Lecture 6 - Intracellular compartments and transport I

Lecture 6 - Intracellular compartments and transport I 01.26.11 Lecture 6 - Intracellular compartments and transport I Intracellular transport and compartments 1. Protein sorting: How proteins get to their appropriate destinations within the cell 2. Vesicular

More information

Midterm 1. Average score: 74.4 Median score: 77

Midterm 1. Average score: 74.4 Median score: 77 Midterm 1 Average score: 74.4 Median score: 77 NAME: TA (circle one) Jody Westbrook or Jessica Piel Section (circle one) Tue Wed Thur MCB 141 First Midterm Feb. 21, 2008 Only answer 4 of these 5 problems.

More information

Supplementary Information

Supplementary Information Supplementary Information MAP2/Hoechst Hyp.-AP ph 6.5 Hyp.-SD ph 7.2 Norm.-SD ph 7.2 Supplementary Figure 1. Mitochondrial elongation in cortical neurons by acidosis. Representative images of neuronal

More information

Zool 3200: Cell Biology Exam 5 4/27/15

Zool 3200: Cell Biology Exam 5 4/27/15 Name: Trask Zool 3200: Cell Biology Exam 5 4/27/15 Answer each of the following short answer questions in the space provided, giving explanations when asked to do so. Circle the correct answer or answers

More information

Massachusetts Institute of Technology Harvard Medical School Brigham and Women s Hospital VA Boston Healthcare System 2.79J/3.96J/BE.

Massachusetts Institute of Technology Harvard Medical School Brigham and Women s Hospital VA Boston Healthcare System 2.79J/3.96J/BE. Massachusetts Institute of Technology Harvard Medical School Brigham and Women s Hospital VA Boston Healthcare System 2.79J/3.96J/BE.441/HST522J INTEGRINS I.V. Yannas, Ph.D. and M. Spector, Ph.D. Regulator

More information

1. The plasma membrane of eukaryotic cells is supported by a. actin filaments. b. microtubules. c. lamins. d. intermediate filaments.

1. The plasma membrane of eukaryotic cells is supported by a. actin filaments. b. microtubules. c. lamins. d. intermediate filaments. ANALYSIS AND MODELING OF CELL MECHANICS Homework #2 (due 1/30/13) This homework involves comprehension of key biomechanical concepts of the cytoskeleton, cell-matrix adhesions, and cellcell adhesions.

More information

C. elegans Dynamin Mediates the Signaling of Phagocytic Receptor CED-1 for the Engulfment and Degradation of Apoptotic Cells

C. elegans Dynamin Mediates the Signaling of Phagocytic Receptor CED-1 for the Engulfment and Degradation of Apoptotic Cells Developmental Cell 10, 743 757, June, 2006 ª2006 Elsevier Inc. DOI 10.1016/j.devcel.2006.04.007 C. elegans Dynamin Mediates the Signaling of Phagocytic Receptor CED-1 for the Engulfment and Degradation

More information

targets. clustering show that different complex pathway

targets. clustering show that different complex pathway Supplementary Figure 1. CLICR allows clustering and activation of cytoplasmic protein targets. (a, b) Upon light activation, the Cry2 (red) and LRP6c (green) components co-cluster due to the heterodimeric

More information

Multiple Choice Review- Eukaryotic Gene Expression

Multiple Choice Review- Eukaryotic Gene Expression Multiple Choice Review- Eukaryotic Gene Expression 1. Which of the following is the Central Dogma of cell biology? a. DNA Nucleic Acid Protein Amino Acid b. Prokaryote Bacteria - Eukaryote c. Atom Molecule

More information

Molecular Cell Biology 5068 In Class Exam 2 November 8, 2016

Molecular Cell Biology 5068 In Class Exam 2 November 8, 2016 Molecular Cell Biology 5068 In Class Exam 2 November 8, 2016 Exam Number: Please print your name: Instructions: Please write only on these pages, in the spaces allotted and not on the back. Write your

More information

The Drosophila neurogenic gene big brain, which encodes a membraneassociated protein, acts cell autonomously and can act synergistically with

The Drosophila neurogenic gene big brain, which encodes a membraneassociated protein, acts cell autonomously and can act synergistically with Development 124, 3881-3893 (1997) Printed in Great Britain The Company of Biologists Limited 1997 DEV8422 3881 The Drosophila neurogenic gene big brain, which encodes a membraneassociated protein, acts

More information

Serrate-mediated activation of Notch is specifically blocked by the product of

Serrate-mediated activation of Notch is specifically blocked by the product of Development 124, 2973-2981 (1997) Printed in Great Britain The Company of Biologists Limited 1997 DEV8420 2973 Serrate-mediated activation of Notch is specifically blocked by the product of the gene fringe

More information

Cell biology: Death drags down the neighbourhood

Cell biology: Death drags down the neighbourhood Cell biology: Death drags down the neighbourhood The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation As Published Publisher Vasquez,

More information

Shavenbaby Couples Patterning to Epidermal Cell Shape Control. Chanut-Delalande H, Fernandes I, Roch F, Payre F, Plaza S (2006) PLoS Biol 4(9): e290

Shavenbaby Couples Patterning to Epidermal Cell Shape Control. Chanut-Delalande H, Fernandes I, Roch F, Payre F, Plaza S (2006) PLoS Biol 4(9): e290 Shavenbaby Couples Patterning to Epidermal Cell Shape Control. Chanut-Delalande H, Fernandes I, Roch F, Payre F, Plaza S (2006) PLoS Biol 4(9): e290 Question (from Introduction): How does svb control the

More information

Gradient Formation of the TGF- Homolog Dpp

Gradient Formation of the TGF- Homolog Dpp Cell, Vol. 103, 981 991, December 8, 2000, Copyright 2000 by Cell Press Gradient Formation of the TGF- Homolog Dpp Eugeni V. Entchev,* Anja Schwabedissen,* and genes spalt (sal) and optomotorblind (omb)

More information