1 Report Colonization, Competition, and Dispersal of Pathogens in Fluid Networks Highlights d P. aeruginosa disperses upstream in branched, vasculaturelike fluid networks d d d Upstream dispersal gives P. aeruginosa a selective advantage This selective advantage enables competition against fastergrowing pathogens Interplay between fluids and bacterial motility shapes multispecies communities Authors Albert Siryaporn, Minyoung Kevin Kim,..., Howard A. Stone, Zemer Gitai Correspondence In Brief Siryaporn et al. find that the major human pathogen P. aeruginosa disperses upstream in vasculature-like fluid networks. This movement enables the bacterium to compete (and win) against other bacteria for nutrients, an effect that the authors can inhibit synthetically. These findings highlight a new strategy that bacteria may use to colonize hosts. Siryaporn et al., 25, Current Biology 25, 2 27 May 4, 25 ª25 Elsevier Ltd All rights reserved
2 Current Biology Report Colonization, Competition, and Dispersal of Pathogens in Fluid Networks Albert Siryaporn,,4 Minyoung Kevin Kim, 2,4 Yi Shen, 3 Howard A. Stone, 3 and Zemer Gitai, * Lewis Thomas Laboratory, Department of Molecular Biology, Princeton University, Washington Road, Princeton, NJ 8544, USA 2 Frick Laboratory, Department of Chemistry, Princeton University, Washington Road, Princeton, NJ 8544, USA 3 Engineering Quad, Department of Mechanical and Aerospace Engineering, Princeton University, Olden Street, Princeton, NJ 8544, USA 4 Co-first author *Correspondence: SUMMARY The colonization of bacteria in complex fluid flow networks, such as those found in host vasculature, remains poorly understood. Recently, it was reported that many bacteria, including Bacillus subtilis , Escherichia coli , and Pseudomonas aeruginosa [3, 4], can move in the opposite direction of fluid flow. Upstream movement results from the interplay between fluid shear stress and bacterial motility structures, and such rheotactic-like behavior is predicted to occur for a wide range of conditions . Given the potential ubiquity of upstream movement, its impact on population-level behaviors within hosts could be significant. Here, we find that P. aeruginosa communities use a diverse set of motility strategies, including a novel surface-motility mechanism characterized by counter-advection and transverse diffusion, to rapidly disperse throughout vasculature-like flow networks. These motility modalities give P. aeruginosa a selective growth advantage, enabling it to self-segregate from other human pathogens such as Proteus mirabilis and Staphylococcus aureus that outcompete P. aeruginosa in well-mixed non-flow environments. We develop a quantitative model of bacterial colonization in flow networks, confirm our model in vivo in plant vasculature, and validate a key prediction that colonization and dispersal can be inhibited by modifying surface chemistry. Our results show that the interaction between flow mechanics and motility structures shapes the formation of mixed-species communities and suggest a general mechanism by which bacteria could colonize hosts. Furthermore, our results suggest novel strategies for tuning the composition of multi-species bacterial communities in hosts, preventing inappropriate colonization in medical devices, and combatting bacterial infections. RESULTS Pseudomonas aeruginosa is an opportunistic pathogen that infects a broad range of hosts including plants and animals. In humans, it is a major cause of vascular-related illnesses including lung infections, urinary tract infections, bacteremia, and sepsis [5 7]. In fluid flow environments, P. aeruginosa cells attach to surfaces using type IV pili (TFPs). These TFPs are localized to the bacterial cell poles  such that upon attaching to the surface, flow causes the bacteria to orient with the TFP pole pointed in the opposite direction of the flow (Figure A) [3, 4]. The repeated extension and retraction of TFPs in this position drives P. aeruginosa to move upstream along the surface (Figure A). The upstream movement is a direct response to surface shear stress and is not due to chemotaxis . P. aeruginosa cells also swim through fluid environments using flagella, but upstream movement occurs without flagella . While individual bacteria move upstream over short distances and small timescales [, 2, 4], it is unknown whether populations can migrate physiological distances relevant for infection or colonize surfaces for extended periods in fluid flow. In particular, P. aeruginosa cells are dislodged from the surface by the fluid flow force and are subsequently pushed downstream . This finding raises a paradox: if cells are ejected from the surface and move backward along a flow streamline, the same streamline would carry cells back downstream upon detachment from the surface, nullifying any effect of the upstream movement. Furthermore, although individual cells move upstream, it is unknown whether this mechanism could drive the expansion of a multi-cellular population. Upstream Dispersal Involves Multiple Phenotypically Diverse Single-Cell Motility Modes To investigate P. aeruginosa colonization dynamics in flow, we first imaged the leading edge of a population in a linear microfluidic channel. Cell-free medium was flowed steadily through the device (2 3 5 mm, width 3 height) at wall shear stresses between.2 to 2 Pa ( ml/min, v fluid = 2 2 mm/s), which correspond to the dimensions, shear stresses, and flow speeds typically observed in the vasculature of plants and animals [9 2]. Note that these flow rates are significantly higher than typical bacterial swimming rates. Cells were initially seeded at one side of the channel behind a start line (Figure B). In the presence of flow, cells exhibited three distinct motility behaviors: () movement in the opposite direction of the flow toward the finish line (7 mm upstream), (2) detachment from the surface (and subsequent downstream movement with the flow), or (3) no motility. After 2 hr, the fastest cells at the leading edge reached the upstream finish line (Figure B), whereas slower cells Current Biology 25, 2 27, May 4, 25 ª25 Elsevier Ltd All rights reserved 2
3 A B C Fluid Finish Line Cell-Free Medium Type IV pili Start Line -7 Position in channel ( Animal vasculature Upstream Movement Plant vasculature 2 hr 8 hr D E Bacterial Source Cell-free Medium Microtracer beads Figure. Upstream Dispersal of P. aeruginosa Populations in Networks (A) Schematic summarizing upstream movement by P. aeruginosa. Fluid flow orients polar-attached cells such that the attachment pole is positioned upstream and pilus retraction moves cells upstream. (B) P. aeruginosa surface colonization in a linear microfluidic channel. Cells are loaded behind a start line in which cell-free medium flows from the left to right. Within 2 hr, cells at the leading edge of the population reach the finish line. (C) Vascular flow networks in chicken embryos and E. aureum plant leaves contain many branching intersections (arrows). (D) Schematic of a branched flow network microfluidic device used to track colonization, competition, and dispersal. Cell-free medium flowing through the main branch diverges into two branches. Cells are inoculated into the seeded branch. Arrows indicate the direction of flow. (E) Tracking of fluorescent micro-tracer beads indicates a flow pattern that is laminar, stable, and uni-directional. Scale bars represent 2 mm in (C) and mm in (E). See also Figure S and Movie S. continued upstream migration. Cells were also found at the start line and downstream. The dispersal of the population to upstream and downstream regions in the device, which we refer to collectively as upstream dispersal, is due to the phenotypic diversity of motility modes within a single population. As the behavioral heterogeneity at the single-cell level benefits the community as a whole, this could represent a form of bet hedging by P. aeruginosa that enables the species to explore upstream and downstream environments while maintaining colonization of the initial environment. P. aeruginosa Gains a Selective Growth Advantage by Dispersing Upstream We next sought to determine whether upstream dispersal provides bacteria with a selective growth advantage over bacteria that lack this motility mode. For these studies, we modified the microfluidic device to incorporate a branched network geometry, which enabled us to quantify colonization, competition, and dispersal in the same device. ed networks are a defining feature of animal and plant vasculatures (Figure C), with bifurcation of vasculature promoting the uniform distribution of nutrients [3, 4]. To establish the flow pattern in this complex network (Figure D), we imaged micro-tracer beads that verified that the flow was laminar, stable, and uni-directional (Figure E, Movie S). We inoculated one branch, the seeded branch (Figure D), with an equal number of wild-type P. aeruginosa (expressing GFP) and D mutants (expressing mcherry) that are defective in surface motility because they lack the TFP PilT and PilU retraction motors  but retain swimming motility (Figure SA). After 5 hr, wild-type cells colonized both the seeded and side branches, whereas the D cells colonized only the seeded branch (Figure 2A; Movie S2A). We collected the fluid effluent from each branch, which contains both planktonic (swimming) cells and cells that detached from the surface, and cultured the effluent for 3.5 hr at 37 C in order to characterize cell physiology and determined the relative proportion of wild-type and D cells using single-cell fluorescence microscopy. The effluent from the seeded branch contained cells, of which 6% were wild-type and 4% were D cells (Figures 2B 2D). In contrast, the side branch contained only wild-type cells (Figures 2A 2D). The total number of wild-type cells in both branches outnumbered D cells by more than 2-fold ( more cells), indicating that upstream migration results in a selective growth advantage. The greater number of wild-type cells is not due to a difference in growth rates as both strains are represented comparably in planktonic co-culture competitions (Figure SB). Furthermore, wild-type cells from the side branch were 4% larger than those from the seeded branch (Figures 2C and SC), indicating the increased availability of nutrients in the side branch . Thus, by entering the side branch, the upstream-migrating population escapes nutrient limitation imposed by the competing D cells. Dispersal through Zigzag Paths on Surfaces Given that cells that move upstream should simply return downstream along the same streamline when they are released from the surface, our findings raised the question of how P. aeruginosa dispersed to the side branches. By tracking the movements of individual cells (Figure 2E), we found that upstream motility has a component whose direction is perpendicular to the flow. P. aeruginosa cells always migrated in a zigzag path, with some trajectories crossing over into streamlines that flow into the side branch. Cells that entered these streamlines were frequently detached from the surface, carried into the side branch, and subsequently re-attached to the surface of the side branch (Movie S2A). This zigzag motion was observed in upstream movement in linear channels  and in a network geometry in which branches converge at the intersection instead of diverging (Figure S2A; Movie S2B). The motion can be attributed 22 Current Biology 25, 2 27, May 4, 25 ª25 Elsevier Ltd All rights reserved
4 A Wild-type Mixed B E Number of cells in effluent ( C Wild-type D Fraction in effluent WT WT ND Figure 2. Upstream Dispersal Provides P. aeruginosa with a Selective Growth Advantage in (A) Surface colonization of wild-type (green) and pilus-defective D (red) P. aeruginosa cells in a branched network. An equal number of each strain was initially co-inoculated into the seeded branch (not shown). After 5 hr, wild-type cells colonized all areas of the device, whereas D cells remained in the seeded branch. The effluent (containing planktonic and surface-detached cells) from each branch was collected and cultured for an additional 3.5 hr. (B D) The total number of cells in each effluent was measured through optical density (B) and the effluent population composition was determined using fluorescence microscopy (C and D) (see the Supplemental Experimental Procedures). D cells were not detected (ND) in the side branch. Error bars in (D) indicate the SD. (E) Trajectories of individual wild-type cells on surfaces, which move upstream (green) or downstream (cyan) in zigzag paths that cross laterally into different streamlines. Each trajectory was acquired at 3 s intervals for 3 min. Scale bars indicate mm in (A) and (E) and 5 mm in (C). All experiments were performed in triplicate. See also Figure S2 and Movie S2. to the radial organization of TFPs at the cell pole (Figure S2B) and their non-synchronous activity . Zigzag trajectories are also observed through flagellar-mediated swimming in sperm rheotaxis , indicating that similar upstream motions can be achieved using distinct motility mechanisms. An alternative explanation for the presence of bacteria in the side channels is through flagella-mediated upstream movement. However, D mutants retain swimming motility (Figure SA) but do not reach the side channel (Figures 2A 2D), supporting the conclusion that migration to the side channel is driven by surface motility. We also tested whether B. subtilis or E. coli migrates toward the side channel, as both have previously been shown to move upstream through flagella-mediated rheotactic motion [, 2]. After 5 hr of continuous flow in which either species was inoculated into the seeded channel, we found no cells on the surface or in effluent from the side channel (Figures S2C and S2D), suggesting that the flagella-mediated rheotactic behavior does not result in dispersal. Together, our data show that colonization and dispersal is due to surface-mediated upstream migration. Selective Advantage Enables Competition against Faster-Growing Pathogens In natural settings, bacteria compete against other species for shared resources . To determine whether upstream dispersal confers P. aeruginosa with a competitive advantage against other species, we co-inoculated the seeded branch with equal numbers of P. aeruginosa and Proteus mirabilis, a Gram-negative bacterium that grows at a faster rate than P. aeruginosa (Figures S3A and S3B) and moves on surfaces at significantly higher velocities (Figure S3C; Movie S3). Both pathogens cause nosocomial infections, colonize the urinary tract and gut, and may be considered natural competitors [5, 9 23]. In addition, P. mirabilis swims using a flagella-mediated mechanism similar to that of E. coli [24, 25], which suggests that P. mirabilis can move upstream. We flowed media continuously for 5 hr (Figure 3A), collected effluent containing planktonic and surface-detached cells from each branch, and performed the analysis described above (Figures 3B 3D). As predicted from its higher growth rate, P. mirabilis outgrew P. aeruginosa in the seeded branch and accounted for 85% of the bacteria in the branch effluent (Figure 3D). In contrast, only P. aeruginosa cells colonized the side branch (Figures 3A and 3C 3D; Movie S4A). Examination of individual cell trajectories showed that P. mirabilis cells did not disperse upstream (Movie S4A), thereby explaining their restriction to the seeded branch. Furthermore, P. aeruginosa cells in the seeded branch were 29% smaller than those in the side branch (Figures 3C and S3D), indicating that P. aeruginosa cells were nutrient limited in the co-culture with P. mirabilis. These results demonstrate that upstream migration by a surface-motility mechanism enables P. aeruginosa to self-segregate from the Current Biology 25, 2 27, May 4, 25 ª25 Elsevier Ltd All rights reserved 23
5 A P. aeruginosa + P. mirabilis Cell-free Medium P. aeruginosa P. mirabilis B Number of cells in effluent ( C P. aeruginosa P. mirabilis D Fraction in effluent P. aeruginosa P. mirabilis P. aeruginosa P. mirabilis ND Figure 3. Pathogens Self-Segregate to Co-exist in a ed Network (A) Surface colonization of P. aeruginosa (green) and P. mirabilis (red) cells in a branched network. Both strains were initially co-inoculated in equal numbers into the seeded branch. After 5 hr of continuous flow, P. aeruginosa colonized the upper, seeded, and side branches, whereas P. mirabilis colonized only the seeded branch. The dashed box (top) shows a region that is mm upstream from the indicated section. (B D) The effluent (containing planktonic and surface-detached cells) from each branch was analyzed for (B) total cell number using optical density and (C and D) population composition using fluorescence microscopy. P. mirabilis was the dominant species in the seeded branch, whereas P. aeruginosa was the only species that colonized the side branch. ND indicates cells were not detected. Error bars in (D) indicate the SD. Scale bars in (A) and (C) indicate mm and 5 mm, respectively. Experiments were performed in triplicate. See also Figure S3 and Movies S3 and S4. co-culture to colonize a separate niche in flow. P. aeruginosa thus gains a competitive advantage over a bacterium that would otherwise outgrow P. aeruginosa in the absence of flow. We observed similar findings when P. aeruginosa was co-cultured with Staphylococcus aureus (Figure S3E; Movie S4B), which co-colonizes the lungs of cystic fibrosis patients alongside P. aeruginosa , and with the pathogen Salmonella enterica serovar Typhimurium (Figure S3F). These results demonstrate that in a flow environment, bacterial species can self-organize to co-exist in separate micro-environments, despite one species having an apparent growth advantage over the other. Upstream Dispersal Is Characterized by Counter-advection and Lateral Diffusion To improve our ability to understand and ultimately disrupt P. aeruginosa dispersal and colonization, we developed a quantitative model of upstream dispersal (for a detailed derivation, see the Supplemental Results). Upstream migration within a population is a phenotypically diverse cycle consisting of upstream movement on surfaces, detachment from the surface, and downstream re-attachment to the surface (Figure 4A). As cells move upstream along the flow axis (x axis), cells also move and repeatedly switch direction along the transverse (y) axis, resulting in a zigzag path (Figure 2E). This behavior in single cells is described by the differential equation vsðx; y; tþ vsðx; y; tþ = ða bþsðx; y; tþ v + D v2 sðx; y; tþ ; vt vx vy 2 where s(x,y,t) is the population density of cells at positions x and y and at time t that travel upstream at a velocity v, duplicate at a rate a, and detach from the surface at a rate b; D is the effective diffusion coefficient. Upstream dispersal is thus a novel type of movement that is counter-advective along the flow axis and diffusive along the lateral axis. We solved this equation (see the Supplemental Results) for a population of cells with distinct upstream velocities  in a branched flow network. Our model (see the Supplemental Results for parameters) accurately predicts the population density distribution data in linear channels (Figures 4B and 4C) and in branched flow networks and shows that the number of cells that enter the side branch (Figure 4D) increases exponentially with time (Figure 4E). As bacterial growth is also exponential with time, the combined effects of 24 Current Biology 25, 2 27, May 4, 25 ª25 Elsevier Ltd All rights reserved
6 A B C Fluid Number of surfacecolonizing cells G Untreated Thiol- Treated Detachment Upstream Movement Downstream Dispersal Surface Attachment Downstream Colonization -7 Distance ( Untreated model Untreated data Thiol-treated model Thiol-treated data Start Line F D t 5 t 4 Wild-type t 3 Advection t 2 Mixed t Diffusion t E Number of cells reaching the side branch H Time Fluid λ l Initial Colonization Site Whole leaf Brightfield Wild-type P. aeruginosa P. aeruginosa Figure 4. Theoretical and Natural Host Models of Upstream Dispersal (A) Schematic illustrating the diverse motility modes observed during upstream dispersal. (B) Surface colonization of wild-type P. aeruginosa after 5 hr of flow in untreated and thiol-treated linear channels. (C) Corresponding population density data for untreated (circles) or thiol-treated (boxes) devices and population densities predicted by our upstream dispersal model (lines). (D) Schematic depicting the mechanism of upstream dispersal. (i) Cells move upstream in a zigzag trajectory on surfaces, enter side branch streamlines, detach from the surface, and are carried downstream by the flow. (ii) Time evolution of a surface population that advances toward a branching intersection through counter-advection and lateral diffusion. (E) Prediction from our model that the number of cells entering side-branch streamlines increases exponentially with time. (F) Surface colonization of wild-type (green) and surface-motility-defective D (red) P. aeruginosa cells in a thiol-treated device after 5 hr of continuous flow. No cells were observed in the side channel (see Figure S4A). (G) Plant colonization assay in which a tobacco plant leaf was inoculated with equal numbers of wild-type and D P. aeruginosa cells. After 7 days, wild-type cells (green) were observed in the upstream vasculature, whereas D cells (red) were found at the inoculation site. (H) Schematic showing a generalized branched flow network (gray) with characteristic pore spacing l and colonization of the network by bacterial communities (black) that migrate upstream a distance [. Scale bars represent mm in (F) and 5 mm in (G). See also Figure S4. exponential influx and growth result in rapid colonization of the side branch. We tested a prediction of our model that decreasing the surface detachment rate (b) and migration velocity (v) restricts population expansion and prevents dispersal to the side branch. We coated channel surfaces with the thiol compound (3-mercaptopropyl)trimethoxysilane to promote sulfide bond formation with proteins on the bacterial cell surface, thereby increasing cell adhesion to the surface (i.e., making the surface more sticky ). Thiol-treated linear channels inhibited the expansion of the P. aeruginosa population in linear channels (Figures 4B and 4C) and prevented cells from entering the side branch (Figures 4F and S4A), in good agreement with the predictions of our model of upstream dispersal. Upstream Dispersal Promotes Colonization in Plant Vasculature To establish the role of upstream dispersal in the colonization of the vasculature of a natural host of P. aeruginosa, we followed colonization of the tobacco plant Nicotiana tabacum. In these plants, fluid and nutrients flow from the main stem toward the periphery of the leaf vasculature in a branched network (Figure 4G). Current Biology 25, 2 27, May 4, 25 ª25 Elsevier Ltd All rights reserved 25
7 We inoculated plant leaves with an equal mixture of wild-type P. aeruginosa (expressing GFP) and D cells (expressing mcherry) at the periphery using syringe infiltration. After 7 days, wild-type cells were found in the vasculature upstream from the inoculation site (toward the main stem) (Figures 4G and S4B S4D). In contrast, D cells were found only at the inoculation site, resulting in a much more localized infection. Our results are thus consistent with upstream motility representing an important factor driving branched vasculature colonization in vivo. DISCUSSION Understanding how single-cell behaviors give rise to the population-level dynamics of P. aeruginosa in flow provides a quantitative framework for how P. aeruginosa colonization is established and how infection spreads within a host. Our results suggest that P. aeruginosa responds to fluid flow as a host cue by moving in the opposite direction of the flow. By employing diversified strategies of migrating upstream, downstream, and laterally through counter-advection and diffusion, P. aeruginosa communities gain a selective growth advantage in fluid flow. This combination of behaviors enables P. aeruginosa populations to disperse rapidly throughout a fluid-filled vascular network since the population expands into a new branch each time it reaches an intersection (Figure 4H). Since the number of cells that reach a branch junction is exponential with respect to time (Figure 4E), our model suggests that the upstream advancement of P. aeruginosa to a central branch node is catastrophic for the host. Indeed, our experiments demonstrate that only a small number of cells need to reach the branch junction for the establishment of large populations downstream (Figures 2A, 2B, 3A, and 3B). To more fully understand the dispersal of bacteria through generalized flow networks, it will be necessary to integrate additional factors into the model, including the network topology, pore spacing between branch intersections (l), upstream migration distance ([), and migration velocity (Figure 4H). It will also prove important to study the effects of time-periodic flow patterns such as those observed in the urinary tract. Importantly, our model highlights strategies for minimizing colonization of flow networks. Specifically, the advantage gained by upstream dispersal can be eliminated by increasing surface adhesion. These findings have immediate implications for the design of medical devices in order to contain P. aeruginosa colonization and suggest alternative approaches to disrupting P. aeruginosa colonization and infection within hosts. The ability of bacteria to self-segregate into stably co-existing niches has significant implications for pathogens and beneficial commensals. In particular, as fluid flow is prevalent in the digestive tract, understanding how different bacterial species disperse and establish colonization in flow advances our understanding of the forces that shape the composition and structure of microbial communities, as well as our ability to manipulate these populations to improve health. We find that unexpected population-level dynamics emerge from the complex interactions between shear forces, the polar organization of bacterial motility structures, and the architecture of fluidic networks. For example, the polar localization of TFPs may have evolved as an adaptation to promote competition in branched flow networks. As many bacteria possess polar-localized TFPs , upstream dispersal may be a generalized mechanism by which surface-motile bacteria colonize hosts. Thus, while flow has thus far been largely considered in the context of its effects on the motility of individual bacteria, our study shows that flow is a critical factor that drives the colonization, competition, and dispersal of bacterial populations in host environments. Finally, taken together with recent findings , the upstream dispersal of P. aeruginosa provides further evidence that the bacterial response to mechanical forces plays an important role in pathogenic processes. EXPERIMENTAL PROCEDURES Methods Summary Strains were grown in lysogeny broth to mid-exponential phase. For competition experiments, strains were grown separately and mixed in equal number immediately before loading into devices. Microfluidic devices were constructed using standard soft photolithography techniques. Effluent from each branch of the device was collected into culture tubes and incubated for 3.5 hr at 37 C in order to amplify the total number of cells for single-cell microscopy analysis. The total cell number in the effluent was measured by optical density. P. aeruginosa colonization was tracked in Nicotiana tabacum tobacco plants that were exposed continuously to a fluorescent growth light for 7 days. Details on our model of bacterial dispersal by upstream migration, bacterial strains and culture conditions, microfluidic device construction and experimental conditions, fluorescence microscopy, leaf vasculature imaging, swimming assays, planktonic growth rate measurements and competitions, plant colonization, transmission electron microscopy and surface velocity measurements are described in the Supplemental Experimental Procedures. SUPPLEMENTAL INFORMATION Supplemental Information includes Supplemental Results, Supplemental Experimental Procedures, four figures, and four movies and can be found with this article online at AUTHOR CONTRIBUTIONS A.S. and M.K.K. designed and carried out experiments, performed data analysis, and wrote and revised the manuscript. A.S. constructed the quantitative model, and H.A.S. revised it. Y.S. carried out experiments. H.A.S. and Z.G. designed experiments and provided feedback on results. All authors discussed the results and revised the manuscript. ACKNOWLEDGMENTS We thank A. Binns and N. Ouzounov for tobacco plants and J. Gleghorn for an image of chicken embryo vasculature. This work was supported by the NIH Director s New Innovator Award (DP2OD4389) to Z.G., a National Science Foundation grant (33288) to Z.G. and H.A.S., an NIH NRSA postdoctoral fellowship (F32AI952) to A.S., and a graduate fellowship from the STX Scholarship Foundation to M.K.K. Received: September 23, 24 Revised: January 2, 25 Accepted: February 26, 25 Published: April 2, 25 REFERENCES. Marcos, F., Fu, H.C., Powers, T.R., and Stocker, R. (22). Bacterial rheotaxis. Proc. Natl. Acad. Sci. USA 9, Hill, J., Kalkanci, O., McMurry, J.L., and Koser, H. (27). Hydrodynamic surface interactions enable Escherichia coli to seek efficient routes to swim upstream. Phys. Rev. Lett. 98, Current Biology 25, 2 27, May 4, 25 ª25 Elsevier Ltd All rights reserved
8 3. Meng, Y., Li, Y., Galvani, C.D., Hao, G., Turner, J.N., Burr, T.J., and Hoch, H.C. (25). Upstream migration of Xylella fastidiosa via pilus-driven twitching motility. J. Bacteriol. 87, Shen, Y., Siryaporn, A., Lecuyer, S., Gitai, Z., and Stone, H.A. (22). directs surface-attached bacteria to twitch upstream. Biophys. J. 3, Bodey, G.P., Bolivar, R., Fainstein, V., and Jadeja, L. (983). Infections caused by Pseudomonas aeruginosa. Rev. Infect. Dis. 5, Fluit, A.C., Schmitz, F.J., and Verhoef, J.; European SENTRY Participant Group (2). Frequency of isolation of pathogens from bloodstream, nosocomial pneumonia, skin and soft tissue, and urinary tract infections occurring in European patients. Eur. J. Clin. Microbiol. Infect. Dis. 2, Vincent, J.L., Bihari, D.J., Suter, P.M., Bruining, H.A., White, J., Nicolas- Chanoin, M.H., Wolff, M., Spencer, R.C., and Hemmer, M.; EPIC International Advisory Committee (995). The prevalence of nosocomial infection in intensive care units in Europe. Results of the European Prevalence of Infection in Intensive Care (EPIC) Study. JAMA 274, Mattick, J.S. (22). Type IV pili and twitching motility. Annu. Rev. Microbiol. 56, Ku, D.N. (997). Blood flow in arteries. Annu. Rev. Fluid Mech. 29, Motomiya, M., and Karino, T. (984). patterns in the human carotid artery bifurcation. Stroke 5, Zimmermann, M.H. (983). Xylem Structure and the Ascent of Sap. (Berlin, New York: Springer-Verlag). 2. Dimond, A.E. (966). Pressure and flow relations in vascular bundles of the tomato plant. Plant Physiol. 4, Zamir, M. (988). Distributing and delivering vessels of the human heart. J. Gen. Physiol. 9, West, G.B., Brown, J.H., and Enquist, B.J. (999). A general model for the structure and allometry of plant vascular systems. Nature 4, Weart, R.B., Lee, A.H., Chien, A.C., Haeusser, D.P., Hill, N.S., and Levin, P.A. (27). A metabolic sensor governing cell size in bacteria. Cell 3, Jin, F., Conrad, J.C., Gibiansky, M.L., and Wong, G.C. (2). Bacteria use type-iv pili to slingshot on surfaces. Proc. Natl. Acad. Sci. USA 8, Kantsler, V., Dunkel, J., Blayney, M., and Goldstein, R.E. (24). Rheotaxis facilitates upstream navigation of mammalian sperm cells. elife 3, e Hibbing, M.E., Fuqua, C., Parsek, M.R., and Peterson, S.B. (2). Bacterial competition: surviving and thriving in the microbial jungle. Nat. Rev. Microbiol. 8, Coker, C., Poore, C.A., Li, X., and Mobley, H.L. (2). Pathogenesis of Proteus mirabilis urinary tract infection. Microbes Infect. 2, Ronald, A. (22). The etiology of urinary tract infection: traditional and emerging pathogens. Am. J. Med. 3 (A), 4S 9S. 2. Garrett, W.S., Gallini, C.A., Yatsunenko, T., Michaud, M., DuBois, A., Delaney, M.L., Punit, S., Karlsson, M., Bry, L., Glickman, J.N., et al. (2). Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis. Cell Host Microbe 8, Kerckhoffs, A.P., Ben-Amor, K., Samsom, M., van der Rest, M.E., de Vogel, J., Knol, J., and Akkermans, L.M. (2). Molecular analysis of faecal and duodenal samples reveals significantly higher prevalence and numbers of Pseudomonas aeruginosa in irritable bowel syndrome. J. Med. Microbiol. 6, Finegold, S.M., Sutter, V.L., and Mathisen, G.E. (983). Normal indigenous intestinal flora. In Human Intestinal Microflora in Health and Disease, D.J. Hentges, ed. (New York: Academic Press), pp Berg, H.C. (23). The rotary motor of bacterial flagella. Annu. Rev. Biochem. 72, Tuson, H.H., Copeland, M.F., Carey, S., Sacotte, R., and Weibel, D.B. (23). Flagellum density regulates Proteus mirabilis swarmer cell motility in viscous environments. J. Bacteriol. 95, Sagel, S.D., Gibson, R.L., Emerson, J., McNamara, S., Burns, J.L., Wagener, J.S., and Ramsey, B.W.; Inhaled Tobramycin in Young Children Study Group; Cystic Fibrosis Foundation Therapeutics Development Network (29). Impact of Pseudomonas and Staphylococcus infection on inflammation and clinical status in young children with cystic fibrosis. J. Pediatr. 54, Siryaporn, A., Kuchma, S.L., O Toole, G.A., and Gitai, Z. (24). Surface attachment induces Pseudomonas aeruginosa virulence. Proc. Natl. Acad. Sci. USA, Current Biology 25, 2 27, May 4, 25 ª25 Elsevier Ltd All rights reserved 27
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