Supplemental Table S1. Salmonella isolates included in study Allelic type for b Isolate a Serotype Source fima mdh manb. manb Dupli- subtype

Size: px

Start display at page:

Download "Supplemental Table S1. Salmonella isolates included in study Allelic type for b Isolate a Serotype Source fima mdh manb. manb Dupli- subtype"

Natalie Pitts
6 years ago
Views:

1 Supplemental Table S1. Salmonella isolates included in study Allelic type for b Isolate a Serotype Source fima mdh manb Combined ST b ST/Serotype County c Farm fima Deletion e manb Dupli- subtype cation d S5-386 Thompson cattle AP Livingston 905 No No S5-387 Muenster cattle AQ Franklin 909 No No S5-419 Newport cattle O Cortland 910 No No S5-420 Newport cattle O Seneca 903 No No S5-424 Newport cattle O St. Lawrence 204 No No S5-425* Muenster cattle AQ Wyoming 259 No No S5-427 Oranienburg cattle AZ Oneida 61 Yes No S5-428 Rough o:i:1,2 cattle J Oswego 906 No No S5-429 Typhimurium cattle I Cortland 911 No No S5-430 T. Copenhagen cattle K Oswego 906 No No S5-431 Kentucky cattle R Erie 901 No No S5-432 Muenster cattle AQ Wyoming 907 No No S5-433 Typhimurium cattle I Ontario 820 No No S5-436 Newport cattle O Oneida 902 No No S5-437 Agona cattle B Tompkins 908 No No S5-544 Newport cattle O Oneida 228 No No S5-545 Newport cattle O Wyoming 260 No No S5-546* Muenster cattle AQ Wyoming 259 No No S5-547 Agona cattle A Lewis 54 No No S5-548 Newport cattle O Franklin, VT 303 No No S5-549 Havana cattle BP Rensselaer 120 Yes No S5-550* T. Copenhagen cattle K Cayuga 97 No No S5-551 Adelaide cattle BT Washington 186 No No S5-552 Newport cattle O Chittenden, VT 489 No No S5-553* Infantis cattle BG Saratoga 223 Yes No S5-554 T. Copenhagen cattle K Cayuga 97 No No S5-555 Typhimurium cattle I Tompkins 100 No No S5-556* Typhimurium cattle I St. Lawrence 208 No No S5-557* Newport cattle O Franklin, VT 303 No No S5-558* 4,5,12:i:- cattle G Wyoming 261 No No S5-559 Montevideo cattle M Wyoming 415 No No S5-560* Infantis cattle BG Saratoga 223 Yes No S5-561* Newport cattle O Franklin, VT 488 No No

2 S5-562 Newport cattle O Lamoille, VT 359 No No S5-564 Typhimurium cattle I St. Lawrence 208 No No S5-565 Newport cattle O Clinton 308 No No S5-566* Infantis cattle BG Saratoga 223 Yes No S5-567* Newport cattle O Franklin, VT 488 No No S5-570 Bardo cattle N Franklin, VT 488 No No S5-571* Infantis cattle BG Saratoga 223 Yes No S5-575* Infantis cattle BG Saratoga 223 Yes No S5-577* Newport cattle O Franklin, VT 320 No No S5-578 Newport cattle O Franklin, VT 320 No No S5-580* 4,5,12:i:- cattle G Wyoming 261 No No S5-582* Infantis cattle BG Saratoga 223 Yes No S5-584* Infantis cattle BG Saratoga 223 Yes No S5-590* Infantis cattle BG Saratoga 223 Yes No S5-591* Newport cattle O Chittenden, VT 490 No No S5-593* Infantis cattle BG Saratoga 223 Yes No S5-594 Newport cattle O Clinton 524 No No S ,5,12:i:- cattle G Clinton 524 No No S5-597* 4,5,12:i:- cattle G Wyoming 261 No No S5-601 Newport cattle O Franklin, VT 218 No No S5-602 Newport cattle O Franklin, VT 300 No No S5-605* Newport cattle O Clinton 524 No No S5-607 Typhimurium cattle I Rensselaer 584 No No S5-610 Newport cattle O Cayuga 163 No No S5-611 Newport cattle O Niagara 510 No No S5-612 Newport cattle O Erie 522 No No S5-615* 4,5,12:i:- cattle G Wyoming 261 No No S5-617* Infantis cattle BG Saratoga 223 Yes No S5-618* 4,5,12:i:- cattle G Wyoming 261 No No S5-619* Newport cattle O Onondaga 152 No No S5-620 Typhimurium cattle I Wyoming 415 No No S5-621 Newport cattle O Wyoming 791 No No S5-622* 4,5,12:i:- cattle G Wyoming 261 No No S5-623* Newport cattle O Onondaga 152 No No S5-624 Newport cattle O Franklin, VT 488 No No S5-625* Newport cattle O Clinton 524 No No S5-626* Newport cattle O Chittenden, VT 490 No No

3 S5-627* Newport cattle O Chittenden, VT 490 No No S5-628 Newport cattle O Chittenden, VT 490 No No S5-629* Newport cattle O Niagara 510 No No S5-630 Montevideo cattle M Washington 521 No No S5-631* Newport cattle O Onondaga 152 No No S5-715 Newport cattle O Lewis 438 No No S5-722* Newport cattle O Cayuga 163 No No S5-725* Infantis cattle BG Saratoga 223 Yes No S5-729 Typhimurium cattle I Washington 804 No No S5-730* Newport cattle O Niagara 510 No No S5-732 Newport cattle O Onondaga 152 No No S5-734 Infantis cattle BG Cayuga 163 Yes No S5-737* 4,5,12:i:- cattle G Wyoming 261 No No S5-739 Newport cattle O Niagara 827 No No S5-740* Newport cattle O Niagara 510 No No S5-743* Infantis cattle BG Saratoga 223 Yes No S5-744 Typhimurium cattle I Wyoming 261 No No S5-746* Newport cattle O Niagara 510 No No S5-747 Typhimurium cattle I Wyoming 691 No No S5-748* Agona cattle B Rensselaer 584 No No S5-750* Infantis cattle BG Saratoga 223 Yes No S5-752* Newport cattle O Niagara 510 No No S5-757 Montevideo cattle M Livingston 329 No No S5-758* Newport cattle O Niagara 510 No No S5-759* 4,5,12:i:- cattle G Wyoming 261 No No S5-760* Infantis cattle BG Saratoga 223 Yes No S5-761 Thompson cattle BI Niagara 679 Yes No S5-762* Newport cattle O Niagara 510 No No S5-765 Thompson cattle BI Livingston 329 Yes No S5-766* Newport cattle O Clinton 524 No No S5-776 Newport cattle O Niagara 637 No No S5-777* 4,5,12:i:- cattle G Wyoming 261 No No S5-780* Newport cattle O Niagara 510 No No S5-782* 4,5,12:i:- cattle G Wyoming 261 No No S5-784 Typhimurium cattle I Clinton 764 No No S5-785* 4,5,12:i:- cattle G Wyoming 261 No No S5-786 T. Copenhagen cattle K Washington 225 No No

4 S5-788 Typhimurium cattle AV Niagara 904 No No S5-789 Muenster cattle AQ Orleans 853 No No S ,12:i:- cattle F Cattaraugus 680 No No S5-796 Typhimurium cattle L Chenango 105 No No S5-797* Typhimurium cattle L Washington 186 No No S5-798* Muenster cattle AQ Livingston 329 No No S5-799 Typhimurium cattle I Genesee 821 No No S5-800 T. Copenhagen cattle K Washington 186 No No S5-805 Typhimurium cattle I Orleans 826 No No S5-808* Newport cattle O Niagara 510 No No S ,5,12:i:- cattle G Niagara 510 No No S5-820* 4,5,12:i:- cattle G Wyoming 261 No No S5-822* Kentucky cattle R Wyoming 261 No No S5-829* 4,5,12:i:- cattle G Wyoming 261 No No S5-831 Typhimurium cattle I Wyoming 837 No No S5-833* Newport cattle O Niagara 510 No No S5-836 Bardo cattle N Genesee 838 No No S5-838* Muenster cattle AQ Livingston 329 No No S5-839 Infantis cattle BG Saratoga 223 Yes No S5-840* Kentucky cattle R Wyoming 261 No No S5-841* 4,5,12:i:- cattle G Wyoming 261 No No S5-842 Newport cattle O Chenango 105 No No S5-845* Typhimurium cattle I Clinton 764 No No S5-846* Newport cattle O Niagara 510 No No S5-864* Kentucky cattle R Wyoming 261 No No S5-865* 4,5,12:i:- cattle G Wyoming 261 No No S5-867 Agona cattle B Allegany 599 No No S5-868 Muenster cattle AQ Wyoming 259 No No S5-872 Agona cattle B Rensselaer 584 No No S5-873* Kentucky cattle R Wyoming 261 No No S5-876* 4,5,12:i:- cattle G Wyoming 261 No No S5-879* Newport cattle O Niagara 510 No No S5-882* Newport cattle O Niagara 510 No No S5-887* Newport cattle O Niagara 510 No No S5-889 Kentucky cattle R Wyoming 261 No No S ,5,12:i:- cattle G Wyoming 261 No No S5-896 Typhimurium cattle I Rensselaer 318 No No

5 S5-903* Newport cattle O Niagara 510 No No S5-910* Newport cattle O Niagara 510 No No S5-914* Newport cattle O Niagara 510 No No S5-916 Typhimurium cattle L Washington 186 No No S5-917 Muenster cattle AQ Livingston 329 No No S5-920* Newport cattle O Niagara 510 No No S5-924* 4,5,12:i:- cattle G Wyoming 261 No No S5-931* Typhimurium cattle I Rensselaer 125 No No S5-933 Typhimurium cattle I Clinton 243 No No S5-936 Typhimurium cattle I Rensselaer 125 No No S5-938* Newport cattle O Niagara 510 No No S5-947 Mbandaka catlle BL Lewis 11 Yes No S5-369 Saintpaul human AK Monroe No No S5-370 Typhimurium human I Chautauqua No No S5-371 Enteritidis human Q Erie No No S5-373 Braenderup human BH Westchester Yes No S ,5,12:i:- human AM Monroe No No S5-375 Typhimurium human I Kings No No S5-376 Enteritidis human Q Nassau No No S5-377 Enteritidis human Q Nassau No No S ,7:-:1,5 human AO Nassau No No S5-379 Panama human AJ Suffolk No No S5-380 Litchfield human AC Niagara No No S5-381 Typhimurium human I Washington No No S5-382 Montevideo human BD Chautauqua Yes No S5-383 Heidelberg human D Dutchess No No S5-388 Urbana human AY Schenectady Yes No S ,5,12:i:- human G Erie No No S ,5,12:i:- human G Monroe No No S5-391 Kintambo human BF Westchester Yes No S5-392 Typhimurium human I Westchester No No S5-393 Newport human O Putnam No No S5-394 Typhimurium human I Dutchess No No S5-395 Javiana human T Richmond No No S5-396 Newport human O Suffolk No No S5-397 Typhimurium human I St. Lawrence No No S ,5,12:i:- human G Westchester No No

6 S5-399 Hadar human AN Tompkins No No S ,5,12:i:- human G Erie No No S5-401 Muenster human AQ Chemung No No S5-402 Enteritidis human Q Unknown No No S5-404 Paratyphi C human BY Monroe No Yes S5-405 Saintpaul human AK Monroe No No S5-406 Javiana human U Bronx No No S5-407 Dublin human V Orange No No S5-408 Stanley human CC Niagara No Yes S ,5,12:i:- human G Erie No No S5-410 Urbana human AY Schenectady Yes No S5-411 Thompson human BI Wayne Yes No S5-412 Thompson human BI Saratoga Yes No S5-413 Newport human O Chenango No No S5-414 Enteritidis human Q Erie No No S5-415 Enteritidis human Q Broome No No S5-416 Enteritidis human AH Albany No No S5-417 Agbeni human BJ Albany Yes No S5-438 Weltvreden human BX Monroe No Yes S5-439 Dublin human V Suffolk No No S5-440 Heidelberg human D Franklin No No S5-441 Abony human AR Monroe No No S5-442 Poona human BB Onondaga Yes No S5-443 Enteritidis human Q Dutchess No No S5-444 Enteritidis human AH Tompkins No No S5-445 Enteritidis human Q Suffolk No No S5-446 Newport human O Saratoga No No S5-447 Paratyphi B var. Java human AD Erie No No S5-448 Heidelberg human D Erie No No S5-449 Newport human O Unknown No No S5-450 Thompson human BI Ulster Yes No S5-451 Mbandaka human BK Oneida Yes No S5-452 Typhimurium human I Nassau No No S5-453 Arechavaleta human AI Nassau No No S5-454 Panama human AJ Chenango No No S5-455 Heidelberg human D Monroe No No S5-456 Schwarzengrund human E Orleans No No

7 S5-458 Schwarzengrund human E Orleans No No S5-459 Enteritidis human AH Erie No No S5-460 Enteritidis human Q Monroe No No S5-461 Enteritidis human AH Delaware No No S5-462 Typhimurium human I Suffolk No No S5-464 Stanley human AL Nassau No No S5-465 Poona human Z Nassau No No S ,12:r:- human C Nassau No No S5-467 Enteritidis human Q Kings No No S5-468 Paratyphi B var. Java human AD Bronx No No S5-469 Abony human AR Monroe No No S5-470 Montevideo human BN Nassau Yes No S5-472 Thompson human BI Nassau Yes No S5-473 Typhimurium human I Suffolk No No S5-474 Montevideo human BC Suffolk Yes No S5-475 Heidelberg human D Nassau No No S5-476 Typhimurium human I Suffolk No No S5-477 Rublislaw human BA Orleans Yes No S5-478 Montevideo human BC Suffolk Yes No S5-479 Muenchen human AG Suffolk No No S5-480 Heidelberg human D New York No No S5-481 Pomona human AA Erie No No S ,12:r:- human C Suffolk No No S5-483 Enteritidis human AH Westchester No No S5-484 Schwarzengrund human E Onondaga No No S5-485 Saintpaul human AK Erie No No S5-486 Enteritidis human Q Onondaga No No S5-487 Give human AB Unknown No No S5-488 Typhimurium human I Westchester No No S5-489 Newport human BU Suffolk No No S5-490 Worthington human BO Warren Yes No S5-491 Heidelberg human X Suffolk No No S5-492 Typhimurium human I Orange No No S5-493 Typhimurium human AT Suffolk No No S5-494 Typhimurium human I Bronx No No S5-495 Heidelberg human D Suffolk No No S5-496 Enteritidis human AH Monroe No No

8 S5-497 Enteritidis human Q Monroe No No S ,5,12:i:- human G Nassau No No S5-499 Paratyphi B human AU Nassau No No S5-500 Panama human CF Nassau No No S5-501 Typhimurium human I Nassau No No S5-502 Berta human CA Nassau No Yes S5-503 Newport human AE Genesee No No S5-504 Muenchen human BS Suffolk No No S5-505 Typhimurium human I Steuben No No S5-506 Infantis human BG Kings Yes No S5-507 Typhimurium human I Nassau No No S5-508 Enteritidis human AH Nassau No No S5-509 Typhimurium human I Washington No No S5-510 Hartford human BV Washington No No S5-511 Typhimurium human I Chemung No No S5-512 Saintpaul human BZ Monroe No Yes S5-513 Newport human AS Franklin No No S5-514 Enteritidis human Q Suffolk No No S5-515 Newport human O Niagara No No S5-516 Typhimurium human I Otsego No No S5-517 Agona human A Suffolk No No S5-518 Newport human O Wayne No No S5-519 Mbandaka human BR Erie No No S5-520 Typhimurium human I Steuben No No S5-521 Mbandaka human BR Erie No No S5-522 Enteritidis human Q Westchester No No S5-523 Thompson human AP Schenectady No No S5-524 Newport human BW Herkimer No Yes S5-525 Newport human O Westchester No No S ,5,12:i:- human G Suffolk No No S ,5,12:i:- human G Onondaga No No S5-528 Enteritidis human Q Erie No No S5-529 Anatum human W Erie No No S5-530 Anatum human W Erie No No S5-531 Typhimurium human CE Steuben No No S5-532 Typhimurium human I Cortland No No S5-533 Infantis human BG Saratoga Yes No

9 S5-534 Typhimurium human I Albany No No S5-535 Typhimurium human I Suffolk No No S5-536 Typhimurium human AV Jefferson No No S5-537 Newport human AE Erie No No S5-538 Enteritidis human Q Nassau No No S5-539 Enteritidis human Q Onondaga No No S5-540 Anatum human W Erie No No S5-541 Newport human O Ulster No No S ,7:-:1,5 human CG Dutchess No No S5-543 Hadar human AN Dutchess No No S5-632 Cubana human BQ Erie Yes No S5-633 Typhimurium human I Onondaga No No S ,5,12:i:- human G Suffolk No No S5-636 Muenchen human BS Saratoga No No S5-637 Berta human CB Oneida No Yes S5-639 Newport human BW Orange No Yes S5-640 Typhimurium human I Franklin No No S5-641 Enteritidis human Q Westchester No No S5-642 Oranienburg human AZ Nassau Yes No S5-643 Newport human P Nassau No No S5-645 Enteritidis human Q Orange No No S5-646 Adelaide human BT Albany No No S5-647 Agona human A Bronx No No S5-648 Blockley human Y Kings No No S5-649 Saintpaul human AK Bronx No No S5-650 Newport human AS Suffolk No No S5-651 Newport human BW Onondaga No Yes S5-652 Javiana human U Erie No No S5-653 Typhimurium human I Suffolk No No S5-654 Nyanza human BM Onondaga Yes No S5-655 Heidelberg human D Oneida No No S ,5,12:i:- human G Westchester No No S5-657 Mbandaka human BK Onondaga Yes No S5-658 Senftenberg human S Suffolk No No S5-659 Urbana human AY Clinton Yes No S5-660 Urbana human AY Clinton Yes No S5-661 Urbana human AY Schenectady Yes No

10 S ,7:-:1,5 human BE Allegany Yes No S5-663 Typhimurium human I Tompkins No No S5-664 Heidelberg human AW Suffolk No No S5-665 Javiana human T Nassau No No S ,5,12:i:- human G Warren No No S5-667 Agona human A Suffolk No No a Isolate designations followed by a * indicate bovine isolates not counted when calculating Chi square values and Fisher's exact test values. Only one representative isolate of each unique serotype/st combination per farm was used in the calculations b MLST and allelic types were assigned to be consistent with Alcaine et al. AAC : c All counties are in New York State, except for a small number of animal isolates from Vermont; for these isolates the county is followed by the state designation for Vermont (VT) d Indicates isolates which have two manb gene copies e Indicates isolates that have 3 bp or 5 bp deletions in the 3' region of the fima gene

LAWS OF NEW YORK, 1995 CHAPTER 605

LAWS OF NEW YORK, 1995 CHAPTER 605 to amend chapter 545 of the laws of 1938, relating to a system of coordinates located in four zones for land boundary and survey station descriptions, in relation to